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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025840 ID=TCONS_00025840|Name=TCONS_00025840|organism=Clytia hemisphaerica|type=transcript|length=1668bpRun BLAST on NCBI transcript from alignment at sc0000549:146984..157302- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025840 ID=TCONS_00025840|Name=TCONS_00025840|organism=Clytia hemisphaerica|type=transcript|length=10319bp|location=Sequence derived from alignment at sc0000549:146984..157302- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00025840 vs. Swiss-Prot (Human)
Match: TMPS9 (Transmembrane protease serine 9 OS=Homo sapiens GN=TMPRSS9 PE=1 SV=2) HSP 1 Score: 131.339 bits (329), Expect = 4.990e-43 Identity = 68/182 (37.36%), Postives = 99/182 (54.40%), Query Frame = 1
Query: 574 RIVGGTKARPGDWPWQVNIDYLYNTANPGAHCGGTLLNDEWVLSAAHCFEADQVAGRYWMRLAEHDIHSSNGWEQRFNVTELIMHPKYDANKNHDYDFALLKLDRKASFNDRIRPACIPGPKTSFPVGTECWISGWGLLKEHDLTGPKILQQAKVPLIDQSTCEQAFSHMSYPITSRMTCAG 1119
RIVGG +A PG++PWQ ++ N CG ++N W++SAAHCF Q ++ + + S R V +++ HP Y+A+ D+D A+L+L F I+P C+P FP +C ISGWG LKE L P++LQ+A V L+DQ+ C + H +T RM CAG
Sbjct: 202 RIVGGMEASPGEFPWQASLR-----ENKEHFCGAAIINARWLVSAAHCFNEFQDPTKWVAYVGATYLSGSEASTVRAQVVQIVKHPLYNAD-TADFDVAVLELTSPLPFGRHIQPVCLPAATHIFPPSKKCLISGWGYLKEDFLVKPEVLQKATVELLDQALCASLYGHS---LTDRMVCAG 374 HSP 2 Score: 62.7734 bits (151), Expect = 4.990e-43 Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 3
Query: 1134 IDSCQGDSGGPLVCKKRVNNADVWFLWGVVSWGNGCARQGSYGVYARTQYVTEWITQ 1304
+DSCQGDSGGPLVC++ +FL G+VSWG GCA GVYAR + +WI +
Sbjct: 380 VDSCQGDSGGPLVCEEPSGR---FFLAGIVSWGIGCAEARRPGVYARVTRLRDWILE 433 HSP 3 Score: 125.561 bits (314), Expect = 4.389e-40 Identity = 68/184 (36.96%), Postives = 101/184 (54.89%), Query Frame = 1
Query: 571 TRIVGGTKARPGDWPWQVNIDYLYNTANPGAHCGGTLLNDEWVLSAAHCFEADQVAGRYWMRLAEHDIHSSNGWEQRFNVTELIMHPKYDANKNHDYDFALLKLDRKASFNDRIRPACIPGPKTSFPVGTECWISGWGLLKEHDLTGPKILQQAKVPLIDQSTCEQAFSHMSYPITSRMTCAGM 1122
TR+VGG A G+ PWQV++ CG T++ D W+LSAAHCF +V + L + G + + +++HP Y+ D+D A+L+L +FN I+P C+P FPVG +C ISGWG +E + T P++LQ+A V +IDQ TC + ++ +T RM CAG
Sbjct: 502 TRVVGGFGAASGEVPWQVSLK-----EGSRHFCGATVVGDRWLLSAAHCFNHTKVE-QVRAHLGTASLLGLGGSPVKIGLRRVVLHPLYNPGI-LDFDLAVLELASPLAFNKYIQPVCLPLAIQKFPVGRKCMISGWGNTQEGNATKPELLQKASVGIIDQKTCSVLY---NFSLTDRMICAGF 675 HSP 4 Score: 58.5362 bits (140), Expect = 4.389e-40 Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 3
Query: 1134 IDSCQGDSGGPLVCKKRVNNADVWFLWGVVSWGNGCARQGSYGVYARTQYVTEWITQ 1304
+DSCQGDSGGPL C++ V++L G+VSWG GCA+ GVY R + WI +
Sbjct: 680 VDSCQGDSGGPLACEE---APGVFYLAGIVSWGIGCAQVKKPGVYTRITRLKGWILE 733 HSP 5 Score: 110.538 bits (275), Expect = 7.586e-35 Identity = 69/193 (35.75%), Postives = 103/193 (53.37%), Query Frame = 1
Query: 544 NCGHKGPSHTRIVGGTKARPGDWPWQVNIDYLYNTANPGAHCGGTLLNDEWVLSAAHCFEADQVAGRYWMRLAEHDIHSSNGWEQRFNVTELIMHPKYDANKNHDYDFALLKLDRKASFNDRIRPACIPGPKTSFPVGTECWISGWGLLKEHDLTGPKILQQAKVPLIDQSTCEQAFSHMSYPITSRMTCAGM 1122
+CG + TRIVGG+ A G+WPWQV++ +L + CG L+ + W+LSAAHCF+ ++ L + + G +R V + HP Y+ DYD ALL+L + +RP C+P P P GT C I+GWG ++E + + LQ+A V L+ + TC + + I+SRM CAG
Sbjct: 816 DCGLAPAALTRIVGGSAAGRGEWPWQVSL-WLRRREH---RCGAVLVAERWLLSAAHCFDVYGDPKQWAAFLGTPFLSGAEGQLER--VARIYKHPFYNLY-TLDYDVALLELAGPVRRSRLVRPICLPEPAPRPPDGTRCVITGWGSVREGG-SMARQLQKAAVRLLSEQTCRRFY---PVQISSRMLCAGF 997 HSP 6 Score: 55.8398 bits (133), Expect = 7.586e-35 Identity = 28/58 (48.28%), Postives = 32/58 (55.17%), Query Frame = 3
Query: 1134 IDSCQGDSGGPLVCKKRVNNADVWFLWGVVSWGNGCARQGSYGVYARTQYVTEWITQK 1307
+DSC GD+GGPL C++ W L GV SWG GC R GVY R V WI Q
Sbjct: 1002 VDSCSGDAGGPLACREPSGR---WVLTGVTSWGYGCGRPHFPGVYTRVAAVRGWIGQH 1056 The following BLAST results are available for this feature:
BLAST of TCONS_00025840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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