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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025838 ID=TCONS_00025838|Name=TCONS_00025838|organism=Clytia hemisphaerica|type=transcript|length=2863bp
TCCATTGCTACTAAACTGCTCTTAATACTATACCAAGAACGACCCGATTT
TTAGATACTTTAAATCGCTTGTGGAGTCACATATAATCTGGCATGTCTCC
CTACACGCTTATACCAGAGGAGTGATATGTAATTCCTTCAAGTGAGAATC
AAATTCTGACTTCATGAATTGAAGGAAAGTTTGATATAATCACTACTCTG
TCGTGCATTACttgaatatttttcagataaaaataaagatatatgcAGCT
AACATTGAATTTATTTCGCAAGCTTGGGTGGAGGCCAAGGAGTGTTGGCA
CACCTGGCAGACAATGGAGTGGaaagaatCGTCGTATTAGAGCTGTTACT
TCTGGAATGAAGAAAAGAATGAGAGACAAAGAAAATAGAATTGCCTCTGT
TGAAGAAATGATTCAGTTCTCATATTTAACAAAGGAGGAAGCTGAAATAc
ctaaagaaaaattggaagaaATTGAAAGTATTAAAAATCGAATGCTATGG
CAAAAAAGGATTTTAGGACATGATGTTTTTGGTCTTGGTGCAGGGAAACC
AAGCCCGTTAGATCATTTTATGGTTACTGACACTCGTAGATATTCTAAAA
AAGACGATGAATAATAAAAGAGCGCTACCAGACTGACTCATGTGGATTCG
AGTCGACGTGGAATTAAGGACTgtcaatttgtcaaagaaattgtcaagaa
cctaataatattttttttgttatctATTGCCATCTTTTTATAACATAACA
TGAACTTAGTTATTTTGAGACTATTTCTGAAATTTGACAATAATTATTGT
TTGGAAAAGCCtcaacaaattttattttttattcAATAGAAAAGGTAATG
CCATCAGATAGTCTTGGACAGTCAACAAAACTAAAACTTTCTTATTCAGC
ACCTTACTACCACTTTAGACATTGTATTCCAGTATATTctacaattttta
tttattttcagaatCAATATTACAAAACTTTAAAGTTGCAACTGGTATAA
TGCAAGCAGTCATTCTTGGGAATAATGATAACTCCATTTCAAGAACACGA
TTTTCACCAAGAAATCTTATCCCTGGACACTTTCCCATTTTGAAGTCAGA
AGAGGAAGAAACTACTCAtaaattatcttttgatataGCCCTCAATGGAA
GAGCTATTGTTGTGGGCAATATGgtaaattttccgcaaaatgaAAGTAAC
CATGATGATGTTGatgaaatacaaaatatttacaaGTTCTATATGTTCTA
TGAAGGCGGGGTTTCATTGATGTATACCAGGAAAGACTCTGCAAAATTAC
ACGATGATTATGTTATTAGTAATAATTATCATTTTGGAATAATGGCAATT
AGTAAGGACGACGAGATCATTTTAAACGGAAGAATCCTTGAACACAAAAA
ATATAGTAAGATCACTTCTGGAAGACTTTCAAAAGATTTGTGTGCCATCA
AAACTAATGACAGACTAATTTTTCAACTATTCTTAGAGTTATCTATAACA
AATAATACACTGTGCCTTGTTATTGAANGGCAATATGGCAAATATTCCGC
AAAATGAAAGTAACCATGATGATGTTGatgaaatacaaaatatttacaaG
TTCTATATGTTCTATGAAGGCGGGGTTTCATTGATGTATACCAGGAAAGA
CTCTGCAAAATTACACGATGATTATGTTATTAGTAATAATTATCATTTTG
GAATAATGGCAATTAGTAAGGACGACGAGATCATTTTAAACGGAAGAATC
CTTGAACACAAAAAATATAGTAAGATCACTTCTGGAAGACTTTCAAAAGA
TTTGTGTGCCATCAAAACTAATGACAGACTAATTTTTCAACTATTCTTAG
AGTTATCTATAACAAATAATACACTGTGCCTTGTTATTGAAGGCCTTGAA
AAAAATGCCTTCCGAtctaaaaactttttcgaggCTTATTTCTTTGATTG
CAAACTTTCTGTGGAAGATAGAGTTTCACTTGACCAAAAATTCATGGTTG
ATTTAACTCAGCTTGGTCACATGTTTATTCGACATGTGTCATTTAACGTA
ATAGAAGATAAAGTTTTAATGTTATCAGATACAAGCTACTTGATTTATTC
TATACGGAATCAGCAATTAATCGCTAGTCAAGATGTTTATTTCTTCACCT
CCATTTACTGGTCTCATGATATGAGAAATGGagaatttttgatttattta
gaTATGCTACAAGATTCGATTTTCATGTACACTATAAACTACAACAATAA
ATCTTTAACAAAAATGAGAACAGTGATTCAAGTGTCAGACTTTCTTGGAA
TAGTGCCTAGAGAGGAATTTTCTAATGTTTTGGTTAGAGTTTCATCAGGA
ACATCTTTGGTCATGCTTGGTTATAAGAATGTATTTCTGATTGATCCATT
TACTGGAGTTCTTGTGCAAAGATTGAAATCAAGTGGTGCTGATAATTCTT
GTTTTGTTAAAGAGATAAAATTGAATTGGTGTTCTAACGAGGTTATAGTT
TTTTATACCAACAGCAAACAAGAGTGCTTTGgcaatgtttttcatttgaa
TATAAGACATGTTGATACTCTATTTTATTTATCGTTAAAAGTTTTATTGC
TTAATCATTCTATTGATAGTTTGTTAGAAATGAATTTACCAAAATCCatt
aaaacttatttttgttattgaaataattatttttataatacaatttctta
aaagatttgagtttatattttttgttaaaaaatgataattttttgactta
gaataattgattgaCAAGTAAGGCTCCTTCCAAAAAATGTTTGGTGGTAC
TATTTTGATGGTGgtctttaaaaaaatggtaGCACTAGTCAATTGTCTAT
TGCTAAAGCAGAT Run BLAST on NCBI transcript from alignment at sc0000549:95656..101228- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025838 ID=TCONS_00025838|Name=TCONS_00025838|organism=Clytia hemisphaerica|type=transcript|length=5573bp|location=Sequence derived from alignment at sc0000549:95656..101228- (Clytia hemisphaerica)
TCCATTGCTACTAAACTGCTCTTAATACTATACCAAGAACGACCCGATTT
TTAGATACTTTAAATCGCTTGTGGAGTCACATATAATCTGGCATGTCTCC
CTACACGCTTATACCAGAGGAGTGATATGTAATTCCTTCAAGTGAGAATC
AAATTCTGACTTCATGAATTGAAGGAAAGTTTGATATAATCACTACTCTG
TCGTGCATTACTTGAATATTTTTCAGATAAAAATAAAGATATATGCAGCT
AACATTGAATTTATTTCGCAAGCTTGGGTGGAGGCCAAGGAGTGTTGGCA
CACCTGGCAGACAATGGAGTGGGTAGGTATTGAACCCTGCTATGCCTCAC
TTTTTTCTTTAGTGGCATATTGTATCTCTAGTAATTTTGTCAGATTTTTT
TAGCTTATACCTTTTTTTCCTTTATTTGAAAAACTTGTAAAATTAATTTA
ATGAAGTGAATTCAGTCACTCTCATTCTCATTCACTTCATTGTAATACAT
AAGGGCAATATTCATGAAAAATAATTTAGTTTTCCTCCATGACATGAAAA
TCTACCATCAAGGCGTAGTCAGGAATTTTTTAGATTAATTATAAATTTAT
TCTTATTTACATTTTTTAGAAAGAATCGTCGTATTAGAGCTGTTACTTCT
GGAATGAAGAAAAGAATGAGAGACAAAGAAAATAGAATTGCCTCTGTTGA
AGAAATGATTCAGTTCTCATATTTAACAAAGGTATCTTTTAAGACATTTC
AATAACCAATTCCATCTCAATTCAATGAAATTGATGATCCTACATATGTG
TTTTTCACTTTTTGTTTTGGCAAATAAATTTTGATTTAGCTCNTATCAAT
AACCAATTCCATCTCAATTCAATGAAATTGATGATCCTACATATTATGTG
TTTTTCACTTTTTGTTTCGGCAAATAAATTTTGATTTAGCTCATCAGGTC
CAAGCACTTTATATTATTAGTTTGCCCTCAAGACATAAATTTTTCATAGA
CCTTTTTGCTAATCAGGATGTCCTGTTGAATAATTAAAAACCTTTAAGCA
TTAAAACAATGGCAAATTAATGCATAATTATTGTAAGGTGGAATTCTTTT
TTCTTATCATTGTTTTGATGCTGAAGTTTGTAATTACTGTATTCAACATG
ACATCTTGATCATCAAAAGGTCGATTTGGTCACCAAGTAAATTTTAGAGT
TTCTCCACAAAAAACACAACTGTTATGCAAGTCAAATTGACTATTATCTA
AATTTTAAGTTCGACTATTCTCTTTCGAAAGGAAGTAACCCTGTGCAAAA
TAAGTGGCTGTTGAGTTTTGAATCTATTGACACATCTAAAGTACAATAAT
TTATGACAATTCAAAACTTTATTTCTTCTTTCCAGGAGGAAGCTGAAATA
CCTAAAGAAAAATTGGAAGAAATTGAAAGTATTAAAAATCGAATGCTATG
GCAAAAAAGGATTTTAGGACATGATGTTTTTGGTCTTGGTGCAGGGAAAC
CAAGCCCGTTAGATCATTTTATGGTTACTGACACTCGTAGATATTCTAAA
AAAGACGATGAATAATAAAAGAGCGCTACCAGACTGACTCATGTGGATTC
GAGTCGACGTGGAATTAAGGACTGTCAATTTGTCAAAGAAATTGTCAAGA
ACCTAATAATATTTTTTTTGTTATCTATTGCCATCTTTTTATAACATAAC
ATGAACTTAGTTATTTTGAGACTATTTCTGAAATTTGACAATAATTATTG
TTTGGAAAAGCCTCAACAAATTTTATTTTTTATTCATAGAATTATATTTC
ACAGGTCTATCGACCTCTACGAAATAATTTTAGATTTATAAATTGTCTAA
TTCTTCATCTGTCGTCCAGTCGTCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTTCTTGCTTTTTGTCGGTT
TTTTCGTTCATGTTTTTGATTTTGCTAAATTTCAACCATTTTTGAAGAAC
TACACAAAATGCGTGTTGACTAACTGTTGACTAATTTTTGATACAATAGA
AAAGGTAATGCCATCAGATAGTCTTGGACAGTCAACAAAACTAAAACTTT
CTTATTCAGCACCTTACTACCACTTTAGACATTGTATTCCAGTATATTCT
ACAATTTTTATTTATTTTCAGAATCAATATTACAAAACTTTAAAGTTGCA
ACTGGTATAATGCAAGCAGTCATTCTTGGGAATAATGATAACTCCATTTC
AAGAACACGATTTTCACCAAGAAATCTTATCCCTGGACACTTTCCCATTT
TGAAGTCAGAAGAGGAAGAAACTACTCATAAATTATCTTTTGATATAGCC
CTCAATGGAAGAGCTATTGTTGTGGGCAATATGGTAAATTTTCCGCAAAA
TGAAAGTAACCATGATGATGTTGATGAAATACAAAATATTTACAAGTTCT
ATATGTTCTATGAAGGCGGGGTTTCATTGATGTATACCAGGAAAGACTCT
GCAAAATTACACGATGATTATGTTATTAGTAATAATTATCATTTTGGAAT
AATGGCAATTAGTAAGGACGACGAGATCATTTTAAACGGAAGAATCCTTG
AACACAAAAAATATAGTAAGATCACTTCTGGAAGACTTTCAAAAGATTTG
TGTGCCATCAAAACTAATGACAGACTAATTTTTCAACTATTCTTAGAGTT
ATCTATAACAAATAATACACTGTGCCTTGTTATTGAANGGCAATATGGCA
AATATTCCGCAAAATGAAAGTAACCATGATGATGTTGATGAAATACAAAA
TATTTACAAGTTCTATATGTTCTATGAAGGCGGGGTTTCATTGATGTATA
CCAGGAAAGACTCTGCAAAATTACACGATGATTATGTTATTAGTAATAAT
TATCATTTTGGAATAATGGCAATTAGTAAGGACGACGAGATCATTTTAAA
CGGAAGAATCCTTGAACACAAAAAATATAGTAAGATCACTTCTGGAAGAC
TTTCAAAAGATTTGTGTGCCATCAAAACTAATGACAGACTAATTTTTCAA
CTATTCTTAGAGTTATCTATAACAAATAATACACTGTGCCTTGTTATTGA
AGGCCTTGAAAAAAATGCCTTCCGATCTAAAAACTTTTTCGAGGCTTATT
TCTTTGATTGCAAACTTTCTGTGGAAGATAGAGTTTCACTTGACCAAAAA
TTCATGGTTGATTTAACTCAGCTTGGTCACATGTTTATTCGACATGTGTC
ATTTAACGTAATAGAAGATAAAGTTTTAATGTTATCAGATACAAGCTACT
TGATTTATTCTATACGGAATCAGCAATTAATCGCTAGTCAAGATGTTTAT
TTCTTCACCTCCATTTACTGGTCTCATGATATGAGAAATGGAGAATTTTT
GATTTATTTAGATATGCTACAAGATTCGATTTTCATGTACACTATAAACT
ACAACAATAAATCTTTAACAAAAATGAGAACAGTGATTCAAGTGTCAGAC
TTTCTTGGAATAGTGCCTAGAGAGGAATTTTCTAATGTTTTGGTTAGAGT
TTCATCAGGAACATCTTTGGTCATGCTTGGTTATAAGAATGTATTTCTGA
TTGATCCATTTACTGGAGTTCTTGTGCAAAGATTGAAATCAAGTGGTGCT
GATAATTCTTGTTTTGTTAAAGAGATAAAATTGAATTGGTGTTCTAACGA
GGTTATAGTTTTTTATACCAACAGCAAACAAGAGTGCTTTGGCAATGTTT
TTCATTTGAATATAAGACATGTTGATACTCTATTTTATTTATCGTTAAAA
GTTTTATTGCTTAATCATTCTATTGATAGTTTGTTAGAAATGAATTTACC
AAAATCCATTAAAACTTATTTTTGTTATTGAAATAATTATTTTTATAATA
CAATTTCTTAAAAGATTTGAGTTTATATTTTTTGTTAAAAAATGATAATT
TTTTGACTTAGAATAATTGATTGACAAGTAAGGCTCCTTCCAAAAAATGT
TTGGTGGTACTATTTTGATGGTGGTCTTTAAAAAAATGGTAGCACTAGTC
AATTGTCTATTGCTAAAGCAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025838-exon-sc0000549-1575043694:100907..101228 | TCONS_00025838-exon-sc0000549-1575043694:100907..101228 | Clytia hemisphaerica | exon |
| TCONS_00025838-exon-sc0000549-1575043694:100498..100609 | TCONS_00025838-exon-sc0000549-1575043694:100498..100609 | Clytia hemisphaerica | exon |
| TCONS_00025838-exon-sc0000549-1575043694:99444..99843 | TCONS_00025838-exon-sc0000549-1575043694:99444..99843 | Clytia hemisphaerica | exon |
| TCONS_00025838-exon-sc0000549-1575043694:95656..97684 | TCONS_00025838-exon-sc0000549-1575043694:95656..97684 | Clytia hemisphaerica | exon |
| TCONS_00025838-exon-sc0000549-1510915933:100907..101228 | TCONS_00025838-exon-sc0000549-1510915933:100907..101228 | Clytia hemisphaerica | exon |
| TCONS_00025838-exon-sc0000549-1510915933:100498..100609 | TCONS_00025838-exon-sc0000549-1510915933:100498..100609 | Clytia hemisphaerica | exon |
| TCONS_00025838-exon-sc0000549-1510915933:99444..99843 | TCONS_00025838-exon-sc0000549-1510915933:99444..99843 | Clytia hemisphaerica | exon |
| TCONS_00025838-exon-sc0000549-1510915933:95656..97684 | TCONS_00025838-exon-sc0000549-1510915933:95656..97684 | Clytia hemisphaerica | exon |
| TCONS_00025838-exon-sc0000549-1491911889:100907..101228 | TCONS_00025838-exon-sc0000549-1491911889:100907..101228 | Clytia hemisphaerica | exon |
| TCONS_00025838-exon-sc0000549-1491911889:100498..100609 | TCONS_00025838-exon-sc0000549-1491911889:100498..100609 | Clytia hemisphaerica | exon |
| TCONS_00025838-exon-sc0000549-1491911889:99444..99843 | TCONS_00025838-exon-sc0000549-1491911889:99444..99843 | Clytia hemisphaerica | exon |
| TCONS_00025838-exon-sc0000549-1491911889:95656..97684 | TCONS_00025838-exon-sc0000549-1491911889:95656..97684 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000549 | supercontig | sc0000549:95656..101228 - |
Blast
The following BLAST results are available for this feature:
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