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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025836 ID=TCONS_00025836|Name=TCONS_00025836|organism=Clytia hemisphaerica|type=transcript|length=1198bp
CTGCGATAATCCCTGagaatgattttgtttttgtactTTAATATGTTTGG
AGTTTTTGGTACTTTGATATGTTAAGAGTGAGTGAATAATAATGTAACAC
CTGGAAAAGTATTTCCCTTTGCTATCCTCCCTCTATCATCTAATTCTTCT
TCTAGTGTACTgtattcaaaaaagttttcagttgCAAGAAATTATTCCCA
AAATgagaacaacaacaacaacaacaagctcAAAATCTCTCTCCTGGAAC
CCAATCACGTGGGTCTTGAACGGCCTGGACACGAGAGATCCCAGGTCCGA
TAAACCAATACCTTCCGTGCGCTATCCTTCATACTGGAAAACGAGCAGCA
GTGAACTCGCAGGGTGGGAACGCCCGACAAGTCCGCCTCCTCAGTATTTC
TCACGCCACCATAATAGAGAAGTTTATCGTAGTTTTTGTCCAGCCTATAG
AAGCAACCAATGGTCAACTTTAAGAGAAATGCTACCCGTAGATGGCATTA
ACAGTGCTAATGAGGATTCAgatcaaaacgaaagtgaaagtgaagtAATT
GCCGGCACCGAGAAAAAGACGACATCATCACCTACGCCTACGCCTCATCA
ACAACAAATGAAAGGGCGTTTGCTGCCAAGTCAGTGTCGTGGAAGGCATT
CACTGTCTTACTCTCCAATGACAAGATATGTTGATGAACAAATCAGATGT
AATGTGATGCAACGGCTTTTTTGAAATGAGTGCTAGATAATTTTTGATTA
ATGGGTTGATGCACAGAACTTTTGAGCTTCAAACTCAACAACCTCTCAAC
AAGCACCACAAACCGACTCAATCTATCTAGATTTCTGGAGACTGTAAATC
CCtgataatatttttcaacattttgccATATACTATACGTATTGTCAAAT
TCTAATCTGATTGTAAAACACCTTTTTTATGCATATTGTACATACATATT
ACATATAACCACAATAAAGACCGAAATGTtactaataaaaaaaatacccc
ctCTCTCAGTGGTATGAACGCTTTCTTAGCGAGTGGAACTAAAACGCCAA
CAACCGGaatctaaaatatttgttaaaacgggctttcttcTCCATTTTCA
gatgtcaaaacgccttccgtacgccctgactgacgcccgttttagcgcct
aaagaaagtctactttataagaatcaaatcaataactcttgattgaag Run BLAST on NCBI protein sequence of TCONS_00025836-protein >TCONS_00025836-protein ID=TCONS_00025836-protein|Name=TCONS_00025836-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MRTTTTTTSSKSLSWNPITWVLNGLDTRDPRSDKPIPSVRYPSYWKTSSS
ELAGWERPTSPPPQYFSRHHNREVYRSFCPAYRSNQWSTLREMLPVDGIN
SANEDSDQNESESEVIAGTEKKTTSSPTPTPHQQQMKGRLLPSQCRGRHS
LSYSPMTRYVDEQIRCNVMQRLF Run BLAST on NCBI transcript from alignment at sc0000549:213906..215732+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025836 ID=TCONS_00025836|Name=TCONS_00025836|organism=Clytia hemisphaerica|type=transcript|length=1827bp|location=Sequence derived from alignment at sc0000549:213906..215732+ (Clytia hemisphaerica)
CTGCGATAATCCCTGagaatgattttgtttttgtactTTAATATGTTTGG
AGTTTTTGGTACTTTGATATGTTAAGAGTGAGTGAATAATAATGTAACAC
CTGGAAAAGTATTTCCCTTTGCTATCCTCCCTCTATCATCTAATTCTTCT
TCTAGTGTACTgtattcaaaaaagttttcagttgCAAGAAATTATTCCCA
AAATgagaacaacaacaacaacaacaagctcAAAATCTCTCTCCTGGAAC
CCAATCACGTGGGTCTTGAACGGCCTGGACACGAGAGATCCCAGGTCCGA
TAAACCAATACCTTCCGTGCGCTATCCTTCATACTGGAAAACGAGCAGCA
GTGAACTCGCAGGGTGGGAACGCCCGACAAGTCCGCCTCCTCAGTATTTC
TCACGCCACCATAATAGAGAAGTTTATCGTAGTTTTTGTCCAGCCTATAG
AAGCAACCAATGGTCAACTTTAAGAGAAATGCTACCCGTAGATGGCATTA
ACAGTGCTAATGAGGATTCAgatcaaaacgaaagtgaaagtgaagtAATT
GCCGGCACCGAGAAAAAGACGACATCATCACCTACGCCTACGCCTCATCA
ACAACAAATGAAAGGGCGTTTGCTGCCAAGTCAGTGTCGTGGAAGGCATT
CACTGTCTTACTCTCCAATGACAAGGTAGATACTCACTTTTAACCGCTTC
AAACAAGGAAATGTTATACATTTGACTGGAGTCTTTTCActcgagtgact
tagggcaagtctcaaaaacctaaaggTTTGCtctaagttttcgctaccaa
tagcagcTCGATTCAGAGATCCACCTAGGGCTCTAAAGTGCCcctatacc
ttaaggtttcagggcccagttgttacgtaattaattattaacctaaaaat
taattattataaagaaattgtaatcatggcgtcataatttgatcgaattt
ggtgacgtcatgagtcgtataatcgctataatacaaaaaatacaaataca
aagaatgggtgctattggtcgcggattcgggatttgtgatttttaaaaat
ctagacacgccctaactcacccgagcAACTCGAACCTCTTTAACTCGTTT
TATGGCACCTTCAGTTTACAataccttactccataactcaaacaaatCTG
TTTTCTTCGTCCGTActcgagttatggaaactccACTGCACTGtaaatca
tatttttcataCATTAAACGCCTCCCACCTATCTTCCAATGTATGGCTAC
TGTATTCATGTATTTGAAACATTATctatttcttttacttttctacTCTT
TTAGATATGTTGATGAACAAATCAGATGTAATGTGATGCAACGGCTTTTT
TGAAATGAGTGCTAGATAATTTTTGATTAATGGGTTGATGCACAGAACTT
TTGAGCTTCAAACTCAACAACCTCTCAACAAGCACCACAAACCGACTCAA
TCTATCTAGATTTCTGGAGACTGTAAATCCCtgataatatttttcaacat
tttgccATATACTATACGTATTGTCAAATTCTAATCTGATTGTAAAACAC
CTTTTTTATGCATATTGTACATACATATTACATATAACCACAATAAAGAC
CGAAATGTtactaataaaaaaaataccccctCTCTCAGTGGTATGAACGC
TTTCTTAGCGAGTGGAACTAAAACGCCAACAACCGGaatctaaaatattt
gttaaaacgggctttcttcTCCATTTTCAgatgtcaaaacgccttccgta
cgccctgactgacgcccgttttagcgcctaaagaaagtctactttataag
aatcaaatcaataactcttgattgaag Coding sequence (CDS) from alignment at sc0000549:213906..215732+ >TCONS_00025836 ID=TCONS_00025836|Name=TCONS_00025836|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0000549:213906..215732+ (Clytia hemisphaerica)
ATgagaacaacaacaacaacaacaagctcAAAATCTCTCTCCTGGAACCC
AATCACGTGGGTCTTGAACGGCCTGGACACGAGAGATCCCAGGTCCGATA
AACCAATACCTTCCGTGCGCTATCCTTCATACTGGAAAACGAGCAGCAGT
GAACTCGCAGGGTGGGAACGCCCGACAAGTCCGCCTCCTCAGTATTTCTC
ACGCCACCATAATAGAGAAGTTTATCGTAGTTTTTGTCCAGCCTATAGAA
GCAACCAATGGTCAACTTTAAGAGAAATGCTACCCGTAGATGGCATTAAC
AGTGCTAATGAGGATTCAgatcaaaacgaaagtgaaagtgaagtAATTGC
CGGCACCGAGAAAAAGACGACATCATCACCTACGCCTACGCCTCATCAAC
AACAAATGAAAGGGCGTTTGCTGCCAAGTCAGTGTCGTGGAAGGCATTCA
CTGTCTTACTCTCCAATGACAAGATATGTTGATGAACAAATCAGATGTAA
TGTGATGCAACGGCTTTTTTGAATgagaacaacaacaacaacaacaagct
cAAAATCTCTCTCCTGGAACCCAATCACGTGGGTCTTGAACGGCCTGGAC
ACGAGAGATCCCAGGTCCGATAAACCAATACCTTCCGTGCGCTATCCTTC
ATACTGGAAAACGAGCAGCAGTGAACTCGCAGGGTGGGAACGCCCGACAA
GTCCGCCTCCTCAGTATTTCTCACGCCACCATAATAGAGAAGTTTATCGT
AGTTTTTGTCCAGCCTATAGAAGCAACCAATGGTCAACTTTAAGAGAAAT
GCTACCCGTAGATGGCATTAACAGTGCTAATGAGGATTCAgatcaaaacg
aaagtgaaagtgaagtAATTGCCGGCACCGAGAAAAAGACGACATCATCA
CCTACGCCTACGCCTCATCAACAACAAATGAAAGGGCGTTTGCTGCCAAG
TCAGTGTCGTGGAAGGCATTCACTGTCTTACTCTCCAATGACAAGATATG
TTGATGAACAAATCAGATGTAATGTGATGCAACGGCTTTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025836-exon-sc0000549-1491911889:213906..214580 | TCONS_00025836-exon-sc0000549-1491911889:213906..214580 | Clytia hemisphaerica | exon |
| TCONS_00025836-exon-sc0000549-1510915933:213906..214580 | TCONS_00025836-exon-sc0000549-1510915933:213906..214580 | Clytia hemisphaerica | exon |
| TCONS_00025836-exon-sc0000549-1575043694:213906..214580 | TCONS_00025836-exon-sc0000549-1575043694:213906..214580 | Clytia hemisphaerica | exon |
| TCONS_00025836-exon-sc0000549-1491911889:215210..215732 | TCONS_00025836-exon-sc0000549-1491911889:215210..215732 | Clytia hemisphaerica | exon |
| TCONS_00025836-exon-sc0000549-1510915933:215210..215732 | TCONS_00025836-exon-sc0000549-1510915933:215210..215732 | Clytia hemisphaerica | exon |
| TCONS_00025836-exon-sc0000549-1575043694:215210..215732 | TCONS_00025836-exon-sc0000549-1575043694:215210..215732 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000549 | supercontig | sc0000549:213906..215732 + |
Blast
The following BLAST results are available for this feature:
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