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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025824 ID=TCONS_00025824|Name=TCONS_00025824|organism=Clytia hemisphaerica|type=transcript|length=910bp
ctttttataatgagcgagacatacgttctctgattacgcaattttcatat
tgacattttcgaggcattttgatgtaactgataataattgagttttgaaa
aaatcttgacttgagtatcgattacatatcgattctatcggttaatcgat
atctaatccatcgattacttattgATTATTTATCGAATACTCAAGATTAT
CAATTATATCAATTAACTACGCCTCTgggatataggagtttaagtttatt
gtgttttttaagtttattcgacaaatctttaaaattttaaccGGAAAATT
TACTCTCTTCAAAAATTTATCCCCTTAAAGTAAAAAGATGACAGATGATA
AACATACATTATGATGGTTGGGTCAGCAAGGAATTCTTGTCATTTGTCAT
TGTTCCCCAACCACACCCATCTCGACTCAACAGAACAGGCACGTGCAGTT
TTTTTTCCCATACTTCAACTTCGCTAAGATTTCGGACCATGAGGAAGCAT
CCCAAGAAATATATTCGGCATCCGACAGCCCGATTCGGAAAAAAAACGGG
AAGTTGTAAGAgggggaatttcccatatcacattttcttggaaatttaGC
TTGAATTCTGGTCTGTGTCAGCATGAACATTAGTCTCTTCAATAAAACTT
TGAACCAGCTGAAGGGCCTGAAGCAATCTTCCTTTGGAGTTGGAAGAAgc
ttgaatggaactatttCAATAACAAgGTCTTTCCATGAAACAAATTATGA
TATTGCAATAGTTGGGGGAGGAATCGTTGGCTTGGCAACTGCTCAAGAAT
TACAACAACGTAATCAAAACCTAAAATGCATTGTTTTAGAAAAAGAGGAT
CAGTTAGGTATGAAAATTTGTAATcattatattttaatctaaaaaTTATT
CCGATTATAT Run BLAST on NCBI transcript from alignment at sc0000549:121793..127082+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025824 ID=TCONS_00025824|Name=TCONS_00025824|organism=Clytia hemisphaerica|type=transcript|length=5290bp|location=Sequence derived from alignment at sc0000549:121793..127082+ (Clytia hemisphaerica)
ctttttataatgagcgagacatacgttctctgattacgcaattttcatat
tgacattttcgaggcattttgatgtaactgataataattgagttttgaaa
aaatcttgacttgagtatcgattacatatcgattctatcggttaatcgat
atctaatccatcgattacttattgATTATTTATCGAATACTCAAGATTAT
CAATTATATCAATTAACTACGCCTCTgggatataggagtttaagtttatt
gtgttttttaagtttattcgacaaatctttaaaattttaaccGGAAAATT
TACTCTCTTCAAAAATTTATCCCCTTAAAGTAAAAAGATGACAGATGATA
AACATACATTATGATGGTTGGGTCAGCAAGGAATTCTTGTCATTTGTCAT
TGTTCCCCAACCACACCCATCTCGACTCAACAGAACAGGCACGTGCAGTT
TTTTTTCCCATACTTCAACTTCGCTAAGATTTCGGACCATGAGGAAGCAT
CCCAAGAAATATATTCGGCATCCGACAGCCCGATTCGGAAAAAAAACGGG
AAGTTGTAAGAgggggaatttcccatatcacattttcttggaaatttaGC
TTGAATTCTGGTCTGTGTCAGCATGAACATTAGTCTCTTCAATAAAACTT
TGAACCAGCTGAAGGGCCTGAAGCAATCTTCCTTTGGAGTTGGAAGAAgc
ttgaatggaactatttCAATAACAAggtaagatttaaagttctttttgct
tttgtatttttttgttttatttgtccacttcatttttttcaaaattggtc
aaaattgttgCATGCTGCCATCTTGTCTTTCTTTATGCCAGACATAATTA
Aaccgaactaatcaaactttgtcgaacttaatcgaacgacaaaagttcga
ttaaattctttaattgaacttttcaaaagttgttAAAATTGTGAACGTAT
AGCTATTCgatcgattaagtttgattcgACAAAACATTATtatattaagt
tcgacaaagttcgacaacgagaaatgttcgaccaattcgacaaaaaactc
tgttcgattggttcgattaattacgtctggtttATGAAAAATCTATGATT
CGAccaattcgacaaaaaactccgtTGGATAAataaagttcgacaacaaa
aaaggttcgacaaattcgacaaaaaactctgttcgattggttcgattaat
tacgtctggtttATGCAAAATctgatgataaaaaaatatctaaTAAAGGG
GTCAACAACTTTCAACATTAGTCAGTTATATAGTATGGCTCTTAATATTC
AGAGAAAATGTATATTGGACTTAACTGTAAGACTGAAATGATAAAGAATT
TTTAGCATATGATTTACTcaattcctttttcaaaaaaccattttagttta
ggtttgaaactgaatactgtCAACTGCTATCAGCTCTagcttgggacgat
tggtcgaaacatgggactggttgatatctgctCTGTaatttcacttactg
ttaaatctctttgacaagaaatttgtttcgataactccaccaagtttatc
aatcatacttcttcgttcctctttAGAGTGCACAGAACACTCACTCacat
ttcgatttaaaagcctactctgtgcgaaagagaaatcctgcattttttta
atacgtcgttcattaactcaaatcaaatgaaaatgaaggtacggtgaaat
ggtggccaaattgtcgtcccatgttttgtcagatagtcccaagttagagc
agttgacggtacagtATTTAATCATTAAAATGAAAGATTAAAATAAACAT
AGAAATTCTAACTTATTTACAACAATGTCATCAATATTTGAACCACTTGA
ACATCATTTTAGTTTTTGATTTCCATcataatcaattgtaaaagCCATAA
AAGGGGTTACACATGGAGGAGATGGAACGAGTCTCATGTTCGCAAAGCAA
AAGGCAAAACCCGCCTATTGAAAATGTTCTAATTTACAATGGTTTCGATT
GATAGCGATAGTCTAGAAAGCCGGTACTACTTTGAATTCTCTGCTCCGGT
TATTTTTAGGCATAGAGGTGGAGGgctattcatatcttaaagaagAGGGG
TGGATTGCTCAACAAAAAGAATCtcgtatatttttccaaaagccCAAATC
ccctaaaaaatctaaaatcgcATATATAaacataaatctaaaaattacaa
caaaacattaccaaaactcaaaatattgtgaattttgggttgatgacgtt
gTCATTCAGGTCCTAAATCCTTTCGGATCCaaaagggtaataaacttttt
acTTTATAATGAAATCAATTTCTCATTGCTCTAAAAAGTCTCTATCAATG
ATTACTAATCCAATGATCGGTCAATCATTgtttaaatccttctcaaattC
AAGATAATGtggatttttcaagttttgatgacgtcatcaggccAAAATTT
ATGCCAATTCTCAAAGCTGTCCAAAGGTCTCGTAGCCCCTACCATTttat
tctcaataaattttccAGTTCAAAGAGGGGTTAACCTTCTCCAAACTCCT
TTTTCAAGCGAGATATCACATTTTATCtgcttgatgacgtcatcaactaa
AAATGCCAAAGAATTTAGCGGAATTAGAAAGTCCTATTCAAGCCTCATGA
ATCCTCCCATCTTAATCCCCATAAAATTCCTGATCTAATGAgaggtcaac
gacctcccaactcctcttCAAActtgagatatcgcattttgaagtttttc
cgaACCCGTGAcatcattgggtccctttacccctgaTGTTGTCAAGGGTC
AATTCctgaattttggaatttttgcaaTTGTTGGGTGGCTGTTTTGATCT
TTTAATATGATGAGAGACCAAAGGTATTAACATGACTTGACTGAATATAT
TTACATTGTAAGACATTTGTCCTGAATAAATCCTAATACATAANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGCTAAAAGTAACAAATCTATACCCAACACTCACCCCAACTTTTAAAA
AGGTGACAACACAATATCCAATCACTAAAATCAATCTTTGTAATATTCCA
ACTTCACTTTTATATCATATCTGGCATGATGATATATACCGCCTAATTGT
CTTTGGAACCAAACATTTTCTATCATAAAACTAACATTTATTCCTCCACC
TGCGTTGCATACGTTCAACCACCAAGGAATATGTACATGGAGAAGAGAAA
ACATAATGTTAGAACAAACAAGGATCTCCCCAAGCAAAACAAGCAAGATC
GGGAGTAAACAGGAATTTACAACCGTTGTACGGGCGGTTCACCTCTCTTT
CAGCGATATGCCTACATCACATAGTTCACTTAAAACACATATTTTCATTT
CTCGTCCAAATCATCAAATTTTACGAAACCAAATCTCCCCAGGCCACTTG
GCAAGATTGGAAGTAAACAGGAGATCTATGGGATCCTGCCTTTCAGCCAT
TTGCTTACACTTGAATTTCGTTCCATTTAACTGTCCTATAATCTCAGGGT
TTGGAAAGAGGGGGGTTCAATTCACACATATCATCTCTCCCTCCTCCCAC
TCAATTAAAGTGGTGAATTAATCTgcctggaaaaaattttctcaaggAAT
ATTTTTATACTTCTGTCATTTTCCGATTTGAAATATTTGTTGTCCagtaa
acaaataaaaagtccaaaattaaatttaaaggaGTACCGTACTTCCTACA
TCAATAATAAACTGACACAATAAGTTGGGTTCCCATCTTTTGATAAACTC
CAGATCATGCATTGATTTAACTTTTTTCCCTTTTGACCCATAGAAGAGTG
AGTCTGTATTCAGTCATTCCAATTTGAAGAATTtcaacccacaaaacaaa
acaaaacaatcaacCAGTGCAGCTTCTTTGACCAAACTCAATCCGCTCCA
GATTCTCTGTTGGCAGTCATTCTTGTGGCGTTGTCTCGTGACCAACCCAC
TGCACTCCGTTTCCAATCTGGCAGCCCCATTTGACGTTGTCTCTTGACTG
ACGGTTGATGTTGTTGTTAACTGTTAGTTATGATGAACTCCATAAATTGT
ACATTCTGTAGCTTGGTGGTAAATTTTTGAAGCCGATGATCGAGTAAGCC
TGCCATATTATCACCataacaaccctctgctaccaATGTTGGGTGGCTGT
TTTGATCTTTTAATATGATGNTttatcctttatgtttaaaatcacgaaaa
tgtacTAATGTATTATGTGATGATTCAATAGAACTAGATCAACCAAAATT
AATCAAGCAACCTCTAATCAAACTGTAATCAAATTGAAGAGGGAAGTAAA
GTTCTATAGGTGTTGGACTTGGTTAAGTAAATTAACAACTATCGTTCAAT
TCTATTTGATGAAGGGTTTGTTTGACATCCCTTGGTATTTAGATCCATCC
ATCCACTAAGTAAGATAACGAGTTTTGTGGATTTGCCGCATTTTCTGAAT
CCACAGGAAACCATTCTATACTGCCAAATTTATGACATAGCTTTTTGATT
TATTAGGTCTTTCCATGAAACAAATTATGATATTGCAATAGTTGGGGGAG
GAATCGTTGGCTTGGCAACTGCTCAAGAATTACAACAACGTAATCAAAAC
CTAAAATGCATTGTTTTAGAAAAAGAGGATCAGTTAGGTATGAAAATTTG
TAATcattatattttaatctaaaaaTTATTCCGATTATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025824-exon-sc0000549-1491911889:121793..122518 | TCONS_00025824-exon-sc0000549-1491911889:121793..122518 | Clytia hemisphaerica | exon |
| TCONS_00025824-exon-sc0000549-1510915933:121793..122518 | TCONS_00025824-exon-sc0000549-1510915933:121793..122518 | Clytia hemisphaerica | exon |
| TCONS_00025824-exon-sc0000549-1575043694:121793..122518 | TCONS_00025824-exon-sc0000549-1575043694:121793..122518 | Clytia hemisphaerica | exon |
| TCONS_00025824-exon-sc0000549-1491911889:126899..127082 | TCONS_00025824-exon-sc0000549-1491911889:126899..127082 | Clytia hemisphaerica | exon |
| TCONS_00025824-exon-sc0000549-1510915933:126899..127082 | TCONS_00025824-exon-sc0000549-1510915933:126899..127082 | Clytia hemisphaerica | exon |
| TCONS_00025824-exon-sc0000549-1575043694:126899..127082 | TCONS_00025824-exon-sc0000549-1575043694:126899..127082 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000549 | supercontig | sc0000549:121793..127082 + |
Blast
The following BLAST results are available for this feature:
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