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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025816 ID=TCONS_00025816|Name=TCONS_00025816|organism=Clytia hemisphaerica|type=transcript|length=2486bp
ACATgaacattgattccatcaccCAAAGTATGGCCCTCGTCAAGTCCAGT
TTATCACCTGATTTCGACGCAATAAGTGATGCTCAACTCAtcgagctgaa
aaattcttcgaCATCCCTAGCAACTACAGTCATCCAAATTTCGGAGAGGT
ATGAACGTTTACTACAATCAGATATCAACGACACAGAACTTCTCGATAAG
TTAGACGAGATAGGCAAACAGCATAAAGGACTCTGTAAATCAGAAGCCAA
ATACCAAGAGATGCTCAATGACTCACTCACCACAAGAGATGTCTACAAAC
AACGTAGTTTCGATGAGTCCAAACTCAACATACGTCTTGACAAATTCTCT
GGCTACGACAGTCCGATGGATATCTATTCGTTCAAAACAGCATTCGAAAA
GATTTATCATCGTACAACCCCTCATCATATGCTTCCAGACCTACTGAAAA
ACAATCTACTGAAAGGTGCTGCCCTGTCACTCGTCACGACCCTAGATGAC
ATTGACGAGATGTGGTCGCGTCTGAAGTCTGCTTATGGTGACACCAAACT
ACTCTTATCAAAGAAATTACATTCACTCACCGAAAATGAATCGCTCAACC
GCAAACAAGATTCTGACAATCTCATCAACTCTCTCAACAATCTTATCAAT
ATTATCAAAGAATTGATGAAACTTGCCGTCGAACACAATATAGAAGAACA
TTTATTCTACGGTGATGGCTTGAACCAGATTTATCGCACCATTGGCACTA
CCAGATTGACCAGATGGCTAACCTCAATTTCCAACGAAACGTTATCCCCC
AAAACAACATGGTTGAGATTCATTAAGTTTCTCGAGAAGGAACTGCAGCT
CGAACAACAGAAAGTACTTATCTTCAATTCAGTGGCATCCGATTCCAAGA
AAAAGCAACCTCTAAAGAATTCAGACTCAAGAGGCAATCGAGGCACACAC
TTCTGGTCCACTGCCGAATCCAACATGTTCAATCTGTCACAGTCCTGACG
GCAGTGATGACCACATCGCAACCAATGGACCCAACAAGATGCAACTCATC
CAATATTTCACTTGCAAGAAGTTCGTCGAGATGACACCTGGACATCGATA
TTCATTGCTTCGCAAGAAGGACTTCTGTCACCAATGCTTGTTCCCTGGTG
CTGATGTTTCATCCGGAAGACATAGATGTCAAAGCACATTCACCTGTCCA
CATCCATCACATGCGAAGTATCCAATCCGCAAACATGTTCTGGTCTGTGA
GGAGCAGAAAAACTCACAGGAAAATCAAGATGTTCTTCAACTCTTCAAAG
ACAGATACATGAAGAGTGCCAACCTACCAAGATTTGCAAAGGACATCAGT
ATCTTTCATGCTGCCTTCCCATCCAACATTTCAACACCAAAGAAGGACGA
GCACAGAGGTATCTATTTACTTCAAACTATCAATGTTAACAAGAATCGTA
TGACCATATTTTATGACAATGGATGCAGTGATTTTATCGTCAAAAAATCA
GCAATCTCACTCCTTGGTGACAATGCAACCCAAGTGTCATCAGGAACCAT
GCGTATTGGAGGTGTTGGTGGTACATCAACAGAAACCAACAATGGAATTT
ACAGCATTCACTTACCACTAGCTGATGGAAAACAAGCTTCAGTATGTGGG
ATCTGCATGGATGCTATTACAGAAACATTTCCACAGTACCCGTTGAGCGA
AGTCATGAACGACATCAAGCAGTCACACATCGCAAGTGGCTCCTCTACAA
CTCTTCCAAAACCTGCACCAGTGGTTGGTGGCGACGTCCATATGATGATA
GGTATGAAGTATATTCGTTATCATCCCAAGTTAATCTATCAGCTACCATC
TGGTCTGGGTATCTACGAATCTGTTTTCAAGAACGCCGATGGTGGAAGGG
GAGTAATCGGAGGACCCCATGAGATTTTTACAGCAATCCACCAATCCTAC
TTCAGTGAAGATCAAGCAATGGATTTCTTCACCGATCAATTGAAGCTCTA
TAAATGGGGTGTACAAATTAACCCTGATCTGAAGAGACTGTCCTTCACAT
CCAAACTGAAACGCTTTGACGAAGTTGAAACCACAGGAACAGAAATCACA
TATCGTTGTGTGAAATGTCGCAGCTGCAGGACATGCAAGGAATCAGATCA
TACTCATGATTTGAGCATCAGAGAGGAAGCTGAACAAGAACTCATAAACA
ACTCAGTATCCTTTGATAGCAAAACGAACACTGTGACTGCAACCTTACCA
CTGATTAAAGACCCTTCAAGATTGGCACCAAATAAAGACATTGCTTTAAA
GGTTTACAACCAGCAGCTCAAGAAACTTTGCAAACCAGAGAACAAACAGG
ACAAAGATGACATCATCACTTCAGAGAAGAAGTTGGAGACCCTTGGTCCA
AGACCTTCCATCTTCACAACAAGAAATGCTGCGTTTAAGCAGTATCCAGA
ACTTCATCCCTTGGCGAGCTGTATGGAAGCCTTCAT Run BLAST on NCBI protein sequence of TCONS_00025816-protein >TCONS_00025816-protein ID=TCONS_00025816-protein|Name=TCONS_00025816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=482bp
MQLIQYFTCKKFVEMTPGHRYSLLRKKDFCHQCLFPGADVSSGRHRCQST
FTCPHPSHAKYPIRKHVLVCEEQKNSQENQDVLQLFKDRYMKSANLPRFA
KDISIFHAAFPSNISTPKKDEHRGIYLLQTINVNKNRMTIFYDNGCSDFI
VKKSAISLLGDNATQVSSGTMRIGGVGGTSTETNNGIYSIHLPLADGKQA
SVCGICMDAITETFPQYPLSEVMNDIKQSHIASGSSTTLPKPAPVVGGDV
HMMIGMKYIRYHPKLIYQLPSGLGIYESVFKNADGGRGVIGGPHEIFTAI
HQSYFSEDQAMDFFTDQLKLYKWGVQINPDLKRLSFTSKLKRFDEVETTG
TEITYRCVKCRSCRTCKESDHTHDLSIREEAEQELINNSVSFDSKTNTVT
ATLPLIKDPSRLAPNKDIALKVYNQQLKKLCKPENKQDKDDIITSEKKLE
TLGPRPSIFTTRNAAFKQYPELHPLASCMEAF Run BLAST on NCBI transcript from alignment at sc0000547:195931..198416 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025816 ID=TCONS_00025816|Name=TCONS_00025816|organism=Clytia hemisphaerica|type=transcript|length=2486bp|location=Sequence derived from alignment at sc0000547:195931..198416 (Clytia hemisphaerica)
ATGAAGGCTTCCATACAGCTCGCCAAGGGATGAAGTTCTGGATACTGCTT
AAACGCAGCATTTCTTGTTGTGAAGATGGAAGGTCTTGGACCAAGGGTCT
CCAACTTCTTCTCTGAAGTGATGATGTCATCTTTGTCCTGTTTGTTCTCT
GGTTTGCAAAGTTTCTTGAGCTGCTGGTTGTAAACCTTTAAAGCAATGTC
TTTATTTGGTGCCAATCTTGAAGGGTCTTTAATCAGTGGTAAGGTTGCAG
TCACAGTGTTCGTTTTGCTATCAAAGGATACTGAGTTGTTTATGAGTTCT
TGTTCAGCTTCCTCTCTGATGCTCAAATCATGAGTATGATCTGATTCCTT
GCATGTCCTGCAGCTGCGACATTTCACACAACGATATGTGATTTCTGTTC
CTGTGGTTTCAACTTCGTCAAAGCGTTTCAGTTTGGATGTGAAGGACAGT
CTCTTCAGATCAGGGTTAATTTGTACACCCCATTTATAGAGCTTCAATTG
ATCGGTGAAGAAATCCATTGCTTGATCTTCACTGAAGTAGGATTGGTGGA
TTGCTGTAAAAATCTCATGGGGTCCTCCGATTACTCCCCTTCCACCATCG
GCGTTCTTGAAAACAGATTCGTAGATACCCAGACCAGATGGTAGCTGATA
GATTAACTTGGGATGATAACGAATATACTTCATACCTATCATCATATGGA
CGTCGCCACCAACCACTGGTGCAGGTTTTGGAAGAGTTGTAGAGGAGCCA
CTTGCGATGTGTGACTGCTTGATGTCGTTCATGACTTCGCTCAACGGGTA
CTGTGGAAATGTTTCTGTAATAGCATCCATGCAGATCCCACATACTGAAG
CTTGTTTTCCATCAGCTAGTGGTAAGTGAATGCTGTAAATTCCATTGTTG
GTTTCTGTTGATGTACCACCAACACCTCCAATACGCATGGTTCCTGATGA
CACTTGGGTTGCATTGTCACCAAGGAGTGAGATTGCTGATTTTTTGACGA
TAAAATCACTGCATCCATTGTCATAAAATATGGTCATACGATTCTTGTTA
ACATTGATAGTTTGAAGTAAATAGATACCTCTGTGCTCGTCCTTCTTTGG
TGTTGAAATGTTGGATGGGAAGGCAGCATGAAAGATACTGATGTCCTTTG
CAAATCTTGGTAGGTTGGCACTCTTCATGTATCTGTCTTTGAAGAGTTGA
AGAACATCTTGATTTTCCTGTGAGTTTTTCTGCTCCTCACAGACCAGAAC
ATGTTTGCGGATTGGATACTTCGCATGTGATGGATGTGGACAGGTGAATG
TGCTTTGACATCTATGTCTTCCGGATGAAACATCAGCACCAGGGAACAAG
CATTGGTGACAGAAGTCCTTCTTGCGAAGCAATGAATATCGATGTCCAGG
TGTCATCTCGACGAACTTCTTGCAAGTGAAATATTGGATGAGTTGCATCT
TGTTGGGTCCATTGGTTGCGATGTGGTCATCACTGCCGTCAGGACTGTGA
CAGATTGAACATGTTGGATTCGGCAGTGGACCAGAAGTGTGTGCCTCGAT
TGCCTCTTGAGTCTGAATTCTTTAGAGGTTGCTTTTTCTTGGAATCGGAT
GCCACTGAATTGAAGATAAGTACTTTCTGTTGTTCGAGCTGCAGTTCCTT
CTCGAGAAACTTAATGAATCTCAACCATGTTGTTTTGGGGGATAACGTTT
CGTTGGAAATTGAGGTTAGCCATCTGGTCAATCTGGTAGTGCCAATGGTG
CGATAAATCTGGTTCAAGCCATCACCGTAGAATAAATGTTCTTCTATATT
GTGTTCGACGGCAAGTTTCATCAATTCTTTGATAATATTGATAAGATTGT
TGAGAGAGTTGATGAGATTGTCAGAATCTTGTTTGCGGTTGAGCGATTCA
TTTTCGGTGAGTGAATGTAATTTCTTTGATAAGAGTAGTTTGGTGTCACC
ATAAGCAGACTTCAGACGCGACCACATCTCGTCAATGTCATCTAGGGTCG
TGACGAGTGACAGGGCAGCACCTTTCAGTAGATTGTTTTTCAGTAGGTCT
GGAAGCATATGATGAGGGGTTGTACGATGATAAATCTTTTCGAATGCTGT
TTTGAACGAATAGATATCCATCGGACTGTCGTAGCCAGAGAATTTGTCAA
GACGTATGTTGAGTTTGGACTCATCGAAACTACGTTGTTTGTAGACATCT
CTTGTGGTGAGTGAGTCATTGAGCATCTCTTGGTATTTGGCTTCTGATTT
ACAGAGTCCTTTATGCTGTTTGCCTATCTCGTCTAACTTATCGAGAAGTT
CTGTGTCGTTGATATCTGATTGTAGTAAACGTTCATACCTCTCCGAAATT
TGGATGACTGTAGTTGCTAGGGATGtcgaagaatttttcagctcgaTGAG
TTGAGCATCACTTATTGCGTCGAAATCAGGTGATAAACTGGACTTGACGA
GGGCCATACTTTGggtgatggaatcaatgttcATGT Coding sequence (CDS) from alignment at sc0000547:195931..198416 >TCONS_00025816 ID=TCONS_00025816|Name=TCONS_00025816|organism=Clytia hemisphaerica|type=CDS|length=1446bp|location=Sequence derived from alignment at sc0000547:195931..198416 (Clytia hemisphaerica)
GAAGGCTTCCATACAGCTCGCCAAGGGATGAAGTTCTGGATACTGCTTAA
ACGCAGCATTTCTTGTTGTGAAGATGGAAGGTCTTGGACCAAGGGTCTCC
AACTTCTTCTCTGAAGTGATGATGTCATCTTTGTCCTGTTTGTTCTCTGG
TTTGCAAAGTTTCTTGAGCTGCTGGTTGTAAACCTTTAAAGCAATGTCTT
TATTTGGTGCCAATCTTGAAGGGTCTTTAATCAGTGGTAAGGTTGCAGTC
ACAGTGTTCGTTTTGCTATCAAAGGATACTGAGTTGTTTATGAGTTCTTG
TTCAGCTTCCTCTCTGATGCTCAAATCATGAGTATGATCTGATTCCTTGC
ATGTCCTGCAGCTGCGACATTTCACACAACGATATGTGATTTCTGTTCCT
GTGGTTTCAACTTCGTCAAAGCGTTTCAGTTTGGATGTGAAGGACAGTCT
CTTCAGATCAGGGTTAATTTGTACACCCCATTTATAGAGCTTCAATTGAT
CGGTGAAGAAATCCATTGCTTGATCTTCACTGAAGTAGGATTGGTGGATT
GCTGTAAAAATCTCATGGGGTCCTCCGATTACTCCCCTTCCACCATCGGC
GTTCTTGAAAACAGATTCGTAGATACCCAGACCAGATGGTAGCTGATAGA
TTAACTTGGGATGATAACGAATATACTTCATACCTATCATCATATGGACG
TCGCCACCAACCACTGGTGCAGGTTTTGGAAGAGTTGTAGAGGAGCCACT
TGCGATGTGTGACTGCTTGATGTCGTTCATGACTTCGCTCAACGGGTACT
GTGGAAATGTTTCTGTAATAGCATCCATGCAGATCCCACATACTGAAGCT
TGTTTTCCATCAGCTAGTGGTAAGTGAATGCTGTAAATTCCATTGTTGGT
TTCTGTTGATGTACCACCAACACCTCCAATACGCATGGTTCCTGATGACA
CTTGGGTTGCATTGTCACCAAGGAGTGAGATTGCTGATTTTTTGACGATA
AAATCACTGCATCCATTGTCATAAAATATGGTCATACGATTCTTGTTAAC
ATTGATAGTTTGAAGTAAATAGATACCTCTGTGCTCGTCCTTCTTTGGTG
TTGAAATGTTGGATGGGAAGGCAGCATGAAAGATACTGATGTCCTTTGCA
AATCTTGGTAGGTTGGCACTCTTCATGTATCTGTCTTTGAAGAGTTGAAG
AACATCTTGATTTTCCTGTGAGTTTTTCTGCTCCTCACAGACCAGAACAT
GTTTGCGGATTGGATACTTCGCATGTGATGGATGTGGACAGGTGAATGTG
CTTTGACATCTATGTCTTCCGGATGAAACATCAGCACCAGGGAACAAGCA
TTGGTGACAGAAGTCCTTCTTGCGAAGCAATGAATATCGATGTCCAGGTG
TCATCTCGACGAACTTCTTGCAAGTGAAATATTGGATGAGTTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025816-exon-sc0000547-1491911889:195931..198416 | TCONS_00025816-exon-sc0000547-1491911889:195931..198416 | Clytia hemisphaerica | exon |
| TCONS_00025816-exon-sc0000547-1510915933:195931..198416 | TCONS_00025816-exon-sc0000547-1510915933:195931..198416 | Clytia hemisphaerica | exon |
| TCONS_00025816-exon-sc0000547-1575043694:195931..198416 | TCONS_00025816-exon-sc0000547-1575043694:195931..198416 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000547 | supercontig | sc0000547:195931..198416 . |
Blast
The following BLAST results are available for this feature:
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