TCONS_00025815 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025815
Unique NameTCONS_00025815
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025815 ID=TCONS_00025815|Name=TCONS_00025815|organism=Clytia hemisphaerica|type=transcript|length=593bp
NNGATGCATCTACCAAAGTCTGAATTTCCGGCAAAACGTGTTGAAGAGAT
CACATTGGAACAAAGCGAACtctcagaaatcaaaaaggagTTACCCGTCA
ATCAATTTGAAGTCCACTTATCTACGACTGAATGGTTAGACGAATTCAAG
AAACGCTACAAATTCTCAGGTTANCATTGGAACAAAGCGAACtctcagaa
atcaaaaaggagTTATCCGTCAATCAATTCGAAGTCCACTTATCTACGAC
TGAATGGTTAGACGAATTCAAGAAACGCTACAAATTCTCAGGTTACATTA
TTGATCCTAATCAACATTGTTTTCAGAAGGTTATTCGAATCCTTACCTTT
GTCATGAAGTTCATCAATCAAACTCGGAAATCTAAGCATTCTTCTAAGCC
ACCAAGTCAAGATTTGATGAAGGATGCAGAATCATATTTCTTTAGGAAAG
GAACAATAGAAGTCAAACACTTCCTGAAACCACAACAATACCAAAAGATC
CCCAGAGAAAAAGATGGTATTCTTGTTTACACCGGTCGAATTCTTCCCGA
GCAAGAAGTATCCATCGTTGGTCAATTCACAACAGTGATGAAN
Run BLAST on NCBI

protein sequence of TCONS_00025815-protein

>TCONS_00025815-protein ID=TCONS_00025815-protein|Name=TCONS_00025815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MVRRIQETLQILRLXLEQSELSEIKKELSVNQFEVHLSTTEWLDEFKKRY
KFSGYIIDPNQHCFQKVIRILTFVMKFINQTRKSKHSSKPPSQDLMKDAE
SYFFRKGTIEVKHFLKPQQYQKIPREKDGILVYTGRILPEQEVSIVGQFT
TVMX
Run BLAST on NCBI

transcript from alignment at sc0000547:193787..194379

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025815 ID=TCONS_00025815|Name=TCONS_00025815|organism=Clytia hemisphaerica|type=transcript|length=593bp|location=Sequence derived from alignment at sc0000547:193787..194379 (Clytia hemisphaerica)
NTTCATCACTGTTGTGAATTGACCAACGATGGATACTTCTTGCTCGGGAA
GAATTCGACCGGTGTAAACAAGAATACCATCTTTTTCTCTGGGGATCTTT
TGGTATTGTTGTGGTTTCAGGAAGTGTTTGACTTCTATTGTTCCTTTCCT
AAAGAAATATGATTCTGCATCCTTCATCAAATCTTGACTTGGTGGCTTAG
AAGAATGCTTAGATTTCCGAGTTTGATTGATGAACTTCATGACAAAGGTA
AGGATTCGAATAACCTTCTGAAAACAATGTTGATTAGGATCAATAATGTA
ACCTGAGAATTTGTAGCGTTTCTTGAATTCGTCTAACCATTCAGTCGTAG
ATAAGTGGACTTCGAATTGATTGACGGATAActcctttttgatttctgag
aGTTCGCTTTGTTCCAATGNTAACCTGAGAATTTGTAGCGTTTCTTGAAT
TCGTCTAACCATTCAGTCGTAGATAAGTGGACTTCAAATTGATTGACGGG
TAActcctttttgatttctgagaGTTCGCTTTGTTCCAATGTGATCTCTT
CAACACGTTTTGCCGGAAATTCAGACTTTGGTAGATGCATCNN

Coding sequence (CDS) from alignment at sc0000547:193787..194379

>TCONS_00025815 ID=TCONS_00025815|Name=TCONS_00025815|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at sc0000547:193787..194379 (Clytia hemisphaerica)
NTTCATCACTGTTGTGAATTGACCAACGATGGATACTTCTTGCTCGGGAA
GAATTCGACCGGTGTAAACAAGAATACCATCTTTTTCTCTGGGGATCTTT
TGGTATTGTTGTGGTTTCAGGAAGTGTTTGACTTCTATTGTTCCTTTCCT
AAAGAAATATGATTCTGCATCCTTCATCAAATCTTGACTTGGTGGCTTAG
AAGAATGCTTAGATTTCCGAGTTTGATTGATGAACTTCATGACAAAGGTA
AGGATTCGAATAACCTTCTGAAAACAATGTTGATTAGGATCAATAATGTA
ACCTGAGAATTTGTAGCGTTTCTTGAATTCGTCTAACCATTCAGTCGTAG
ATAAGTGGACTTCGAATTGATTGACGGATAActcctttttgatttctgag
aGTTCGCTTTGTTCCAATGNTAACCTGAGAATTTGTAGCGTTTCTTGAAT
TCGTCTAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014507XLOC_014507Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025815-exon-sc0000547-1491911889:193787..194379TCONS_00025815-exon-sc0000547-1491911889:193787..194379Clytia hemisphaericaexon
TCONS_00025815-exon-sc0000547-1510915933:193787..194379TCONS_00025815-exon-sc0000547-1510915933:193787..194379Clytia hemisphaericaexon
TCONS_00025815-exon-sc0000547-1575043694:193787..194379TCONS_00025815-exon-sc0000547-1575043694:193787..194379Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025815-proteinTCONS_00025815-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000547supercontigsc0000547:193787..194379 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.09774	4.59483	3.87052	1.84218	1.37052	0.19691	0.237564	0.556011	0.544987	0.675054	0.56162	0.861437	0.983131	1.40386	0.472159	0.844498	0.693568	0.142177	0.785701	0.513862	0.178656	0.653565	0.635595	0.48154	1.9839	1.94764	0.25337	0.81121	0.307637	0.522389
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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