TCONS_00025799 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025799
Unique NameTCONS_00025799
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025799 ID=TCONS_00025799|Name=TCONS_00025799|organism=Clytia hemisphaerica|type=transcript|length=417bp
GgttttttttgtatatttcttattttaatttttaatagtTTATTGTTTAC
CACCAttattttaaacattattttcatcattaaaattttacaaactttaT
TTTCGTCATCATCATGTAAATAGTTTAGTTGACTTTCGGTTTTGATATTG
GTTTTGGTTCCAAACATTCTCAATTGTTCGACATCTCAAAAAGATCAAAC
AAGACGTCGATTCCAAGATAGACCATCATCTTAAAAGGAGACAAAAACAA
GTATCTATCTGACACCTAACATCAAAGTCAACGaacaaaaaaacagtcat
aagaTCTTATAACAACTGTCAAAAATATCAGCTCATCCAGAAACATCACG
GTATCTCAAGAACAATGCCTTCAAGGAATTTTATTACTTgaattttatct
tttattttaaaacttta
Run BLAST on NCBI

transcript from alignment at sc0000547:36080..42194-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025799 ID=TCONS_00025799|Name=TCONS_00025799|organism=Clytia hemisphaerica|type=transcript|length=6115bp|location=Sequence derived from alignment at sc0000547:36080..42194- (Clytia hemisphaerica)
GGTTTTTTTTGTATATTTCTTATTTTAATTTTTAATAGTTTATTGTTTAC
CACCATTATTTTAAACATTATTTTCATCATTAAAATTTTACAAACTTTAT
TTTCGTCATCATCATGTAAATAGTTTAGTTGACTTTCGGTTTTGATATTG
GTTTTGGTTCCAAACATTCTCAATTGTTCGACATCTCAAAAAGGTAAGTT
ATTTTCTGAAATTTTAGCTTTAGTATAAGTCGGAGAGGAGGCTCCCCAAG
CAGCTTGCGTGATGTCGTGATATAGACTTTGTTCTAGTGATTACGTGATT
TGGAAATTTTTTCTTCGTCATTTCGCGATCAGAGGTCAAAACGTGATTGT
GATTTAAATTTTTTGGTTAAGGCCTTTTTCAAATTATCTTTCCGCGAAAT
CTAATCCCAATTTTATCCCATTAAAGTAACTATTTTTTCAAAATTATCTT
TCTTGATTCAGATCAAACAAGACGTCGATTCCAAGATAGACCATCATCTT
AAAAGGAGACAAAAACAAGTATCTATCTGACACCTAACATCAAAGTCAAC
GAACAAAAAAACAGTCATAAGATCTTATAACAACTGTCAAAAATATCAGC
TCATCCAGAAACATCACGGTATGATAAAGCTTTGCCATTTAACCGTATAA
CTTTGAATAAAACTTTTTCCAACTGTAGAGAATTAAGTGGGTCCGAATCG
CTGGGATAGCTGCCTATACCAGACGGACACGACACATGGGCCCCGGTGAG
TCATTTTGAGTGAGGGGTCCAAAATTTTTGAAAAAAATGTCGCCCACCAT
GGTTGGGCGACGAAGAAAATTTTTCACTTTTTAGACCCTCAAAACACCTT
AAAACGATATCTATTTGGGGAGAATAATAGTTTTTGTGGTCGATTTGGTC
TCAAACCAGCTTAAAATAGTAACTCTTTAAAACGTATGACATGGTCTACC
AAAAAGTGGGGGGGGGCATGGACCATGGACCTTCAAACGAGTTCGAAATC
TCACCAAGGTAAGAAATTTTCAAGATCGAAAATTTTGAATGTTATTTGTT
CGGAAATGTGTAGAAACTAAGTAACGAAAAATTGGATTTTATTTATCCTG
AGAACTTTTAGTTTATAAAGGCTTCATGCTCTATTCCGTTTGAAGACTTT
ATGGCGTTTCTGGTGACACTTGAGAATACTTGGTATTGACTGAAAAAATT
GGCTTAGAAAGAAATAATAATTCTTAGTATGAGTGAATTCAATAACAAAA
ATCTAACATTTTCTCCCTGGATAACGTATGTTCTGCACGTCCAAAAACCA
ACAAATGTCAGAGTATTACCTGACGACATCAGGATGTCATAGAGCCGAGA
AAATGCTCAATAAGAAGTTGACTCTGGACCTGAAACGATTGTTTGTGTAA
ACTTTGCAACCTTGTTAAATATAATACGAAAGTTAACAAATTATTGTCAT
TATATTTTGTAGATCTTTAAAGATTTCGATTGGAGGAACCATCACATAGT
CAACAGGAGAACAAGATTTTGTATCAATTGAACATCTCGAATACAAAGCT
TTTAAAACCATTTCGAAAAGAAGAGGAGGGATGCTTTGGAGACCATTCCA
ACATCATTTTTGGTTCCAAACAGATGTTAAAACATTCCTCAGAGATGTAA
GTGATTGATATTGTTTACGTAATACTTATATTTTTTGTGATTTTATCATA
TCAGTTCGGCACAGATCCGCAACGCTGCAAAATTCTGCATCTTTAGCGTT
GTGATAATCCGCAACGTTGCGAAATTCCGCAGCTTTATTGCTGCATAATT
TCGCAGCTCTGGCCTTTGGACCAAAATCGGCATCGCAGGGCCTGAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAGATTTTACCATTTCACTTGTTCGTTTTTAACAGGGC
ACTCAAATTTATGGCAACAAACTCATCTTTTCTTAAACTTCAAACGAGTT
CGAAATCTCACCAAGGTAAGAAATTTTCAAGATCGAAAATTTTGAATGTT
ATTTGTTCGGAAATGTGTAGAAACTAAGTAACGAAAAGTTAGATTTTATT
TATCTGAGAACTTTTAGTTTATAAAGGCTTCATGCTCTATTCCGTTTGAA
TACTTTATGGCGTTTCTGGCGACGCTTGAGAATACCCTTGGTATTGACTG
GAAAATTGGCTTAGAAAGAAGTAATAATTCTTAGTATGAGTGAATTCAAT
AACAAAAATCTAACATTTTCTCTCTGGACAACGTATGTTCTGCACGTCCA
AAAACCAACAAATGTCAGAGTATTACCTGACGACATCAGGATGTCATAGA
GCCGAGAAAATGCTCGATAAGAAGTTGACTCTGGACCTGAAACGATTGTT
TGTGTAAACTTTGCAACCTTGTTAAATATAGTACGAAAGTTAACAAATTA
TTGTCATTACATTTTGCAGATCTTTAAAGATTTCGATTGGAGGAACCATC
ACATAGTCAACAGGAGAACAAGATTTTGTATCAATTGAACATCTCGAATA
CAAAGCTTTTAAAACCATTTCGAAAAGAAGAGGAGGGATGCTTTGGAGAC
CATTCCAACATCATTTTTGGTTCCAAACAGATGTTAAAACATTCCTCAGA
GATGTAAGTGATTGATATTGTTTATTTAATACTTATATTTTTTGTGATTT
TATCATATCAGTTCGGCACAGATCCGCAACGCTGCAAAATTCTGCATCTT
TAGCGTTGTGATAATCCGCAACGTTGCGAAATTCCGCAGCTTTATTGCTG
CATAATTTCGCAGCTCTGGCCTTTGGACCAAAATCGGCATCGCAGGGGCT
GAATAATGTGCATTTTGAAGAACAACCCAAAAGGAAAATTTTCATCCTAG
CATTTTAATTTCCTACCAAGCGATTATTCACAATCATTCTTGGAAGAAAT
GCTACTTCGTTCAAAAAAGCACTACTTTGTTCAAGAAAGCAAGTTTTTGC
CTGATTTTGCATGTGTTTAGAAGAAAATTGGTGGGCGTTCATAATTTTTA
AAATCACAAGCTTCAATTAGGAACGTTGCGTAAAATAGCAGCGCAGCCCT
GGGGAAACGCTGCGAAAAACCGCAACGTTGCGAAATATTGCAACGTTGCG
GATATATGCAATTTGCCGAACTGATATGTTTTATGCAAATGATNTGGAAC
GTTGCGTAAAATAGTAGCGCAGCCCTGGGGAAACGCTGCGAAAAACCGCA
ACGTTTCGAAATATTGCAACGTTGCGGATATATGCAATTTGCCGAACTGA
TATGTTTTATGCAAATGATCGAAAACTTCAGTGAATTCAAATTTGTAACC
TTTCCAGTGGTTTATATCAACTTATATGCCTATGCCTTTGATTGATTGCC
TTTTATAGTCTGTATCTGTTTCTTTAAGGTATATCACCACAAAAACAATA
CTTCTCATTAGATGCAGCCAAACATCCATTTGCATCTTAATATCTACATA
TGAATATCCCACACGTAAGGTTAGTAATTACCACCTTGCAAAGTTAGATC
TACTTTAGGTGTACAAACTATCGCGAGCAGAAACTTTCGCGATTTTCGCG
AATTTTGGCCTTTTTTGCGAAAGTAAATGTCTTTGAAAAATCTTAACTAG
CGAAAAACAATTTTTCCTCACATTGGCGAAAGTAAATGNATTATTTAATA
CTTATATTTTTTGTGATTTTATCATATCAGTTCGGCACAGATCCGCAACG
CTGCAAAATTCTGCATCTTTAGCGTTGTGATAATCCGCAACGTTGCGAAA
TTCCGCAGCTTTATTGCTGCATAATTTCGCAGCTCTGGCCTTTGGACCAA
AATCGGCATCGCAGGGCCTGAACCGGGGTCCCAAAATAATGTGCATTTTG
AAGAACAACCCAAAAGGAAACTTTTCATCCTAGCATTTTAATTTCCTACC
AAGCGATTATTCACAATCATTCTTGGAAGAAATGCTACTTCGTTCAAAAA
AGCACTACTTTGTTCAAGAAAGCAAGTTTTTGCCTGATTTTGCATGTGTT
TAGAAGAAAATTGGTGGGCGTTCATAATTTTTAAAATCACAAGCTTCAAT
TAGGAACGTTGCGTAAAATAGCAGCGCAGCCCTGGGGAAACGCTGCGAAA
AACCGCAACGTTGCGAAATATTGCAACGTTGCGGATATATGCAATTTGCC
GAACTGATATGTTTTATGCAAATGATCGAAAACTTCAGTGAATTCAAATT
TGTAACCTTTCGGTGGTTTATATCAACTTATATGCCTATGCCTTTGATTG
ATTTTATAGTCTGTATCTGTTTCTTTAAGGTATATCACCACAAAAACAAT
ACTTCGCATTAGATGCAGCCAAACATCCATTTGCATCTCAATATCTACAT
ACGAATATCCCACACGTAAGGTTAGTAATTACCACCTTGCAAAGTTAGAT
CTACTTTAGGTGTACAAACTATCGCGAGCAGAAACTTTCGCGATTTCCGC
GAATTTTGGCCTTTTTTGCGAAAGTAAATGTCTTTGAAAAATCTTAACTA
GCGAAAAACAATTTTTCCTCACATTGGCGAAAGTAAATGTCGCAAATTTC
GCGATTTTTCGACCTCGCGAAAGTTTCTGCTCACGAAAATTTGTACGCCT
AAAGTGCCGTTTGCTATCTTTTTAACAACCCTGTGTCATAGACCCAAAAC
CCCTACCCATTGCGAAATTTGGCTAGAATTTCGTCCCCGGTGGGAAAATT
CCCTACAATTTTCAGTCTGTTCCTCTAAAGAATCCTGCATTGTAAACACG
CATGCGTAATTTGTCGTTCTTTTAAACCACATGTAGTTAATTCCCGTGAT
GAACGGAGGGGAATGAATCGCTAGGGGTGGTACAGTCGGGGTTGTGGACG
GCGAAATATGTCGTTTTTTATGAAATTTGTCGTTTTTTATGAAATTTGTC
TTTTTTTATGAAATTGGTCGTTCTTTTTGTCTATTATTAGTAATGCAGGA
TTCTTTAGATAAGCCCCCTCTTTAGCTCCCTGGAAAATTGACTTTCTTTT
CATCCTAATTTGAATATCAATGGAAAAAAATTGCAATCCGAAACCATTCT
ACTGGATATTTTGACCTGGGAACAATAGAATTTCTATACAATTAGGATTT
TGATAGATAAATTTAATCCCCACTGTGGAAAAAAGTTCCACCATGCCTGT
GAGACAAGGTTGTTTATTTTATATAAGATACCCCTTTGCACAAGTAGAAA
TTTTACGATGATAAGCATAGGCCTTTGCATGGCAATGCTAGAGAACTCAT
TCCCTCTAGTGTAGTGTGCCTCATGATTTCAGTTGTCGGGTAAATGAGTT
AACCATTTTGACAAGTGATTTTTAGGACGTAACTTACAAAGCGGCCTATT
CAGATATGTTTATTAAAGCGTCTTAAACCCTCTTGTCTTTTGAAATCATG
CTCAGTTGTCAGATCATTGCTTTTTGGTGTAAAATATATATCCAATTCTT
CGAATTAAAGAAAACATCTTGTAAAATGTAAGTTACTGTTATTTTCAGGT
ATCTCAAGAACAATGCCTTCAAGGAATTTTATTACTTGAATTTTATCTTT
TATTTTAAAACTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014493XLOC_014493Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025799-exon-sc0000547-1575043694:42002..42194TCONS_00025799-exon-sc0000547-1575043694:42002..42194Clytia hemisphaericaexon
TCONS_00025799-exon-sc0000547-1575043694:41577..41733TCONS_00025799-exon-sc0000547-1575043694:41577..41733Clytia hemisphaericaexon
TCONS_00025799-exon-sc0000547-1575043694:36080..36146TCONS_00025799-exon-sc0000547-1575043694:36080..36146Clytia hemisphaericaexon
TCONS_00025799-exon-sc0000547-1510915933:42002..42194TCONS_00025799-exon-sc0000547-1510915933:42002..42194Clytia hemisphaericaexon
TCONS_00025799-exon-sc0000547-1510915933:41577..41733TCONS_00025799-exon-sc0000547-1510915933:41577..41733Clytia hemisphaericaexon
TCONS_00025799-exon-sc0000547-1510915933:36080..36146TCONS_00025799-exon-sc0000547-1510915933:36080..36146Clytia hemisphaericaexon
TCONS_00025799-exon-sc0000547-1491911889:42002..42194TCONS_00025799-exon-sc0000547-1491911889:42002..42194Clytia hemisphaericaexon
TCONS_00025799-exon-sc0000547-1491911889:41577..41733TCONS_00025799-exon-sc0000547-1491911889:41577..41733Clytia hemisphaericaexon
TCONS_00025799-exon-sc0000547-1491911889:36080..36146TCONS_00025799-exon-sc0000547-1491911889:36080..36146Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000547supercontigsc0000547:36080..42194 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19396	1.87938	1.15874	0	0.920072	1.27234	1.31574	1.84767	0.431198	0.356072	0.172806	1.15521	1.50348	0.477275	0.581118	1.26212	0.640217	0.674931	0.543947	3.46545	0.494739	1.4927	2.15124	1.67844	1.83129	2.47475	1.40328	3.99365	0.780059	0.771528
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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