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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025798 ID=TCONS_00025798|Name=TCONS_00025798|organism=Clytia hemisphaerica|type=transcript|length=3016bpRun BLAST on NCBI protein sequence of TCONS_00025798-protein >TCONS_00025798-protein ID=TCONS_00025798-protein|Name=TCONS_00025798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=425bp MSSITVREFLRSTSFSEDSDDSQDPLEFVSSRFANLNKDPIITSPKAKEFRun BLAST on NCBI transcript from alignment at sc0000547:13249..21622- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025798 ID=TCONS_00025798|Name=TCONS_00025798|organism=Clytia hemisphaerica|type=transcript|length=8374bp|location=Sequence derived from alignment at sc0000547:13249..21622- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000547:13249..21622- >TCONS_00025798 ID=TCONS_00025798|Name=TCONS_00025798|organism=Clytia hemisphaerica|type=CDS|length=16614bp|location=Sequence derived from alignment at sc0000547:13249..21622- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025798 vs. Swiss-Prot (Human)
Match: F262 (6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2 OS=Homo sapiens GN=PFKFB2 PE=1 SV=2) HSP 1 Score: 278.1 bits (710), Expect = 3.857e-82 Identity = 138/328 (42.07%), Postives = 212/328 (64.63%), Query Frame = 1
Query: 1327 MIIMVGLPARGKTYIARKLCRYLNWCGISAKVVSAGHYRRENAGTDLTHEFFEKGNVIGAKIRQKSYEDALNDGASWLKESDKHQVLIYDATNATKERRRKVLEFCEANEIMPFFIESICYDMGIIETFLDELKFYSPDYIEMDRESARKDFEARLKHYEKEYEEISDKCEIERCSSYIKIIDAGKQYLVNGIEGYLQSHIVYYLMNIHTQKRSLYITMHGECEHNVDQKVGGSSGLTEQGVKFAEALKRYTEKEPLKDLKTWTSPAKGCIETSKFLPGTSEIWRNLNYLDNGECHGMKFGDLQQKFPSVFTSCAGPLDIGWRYPGGE 2310
+I+M+GLPARGKTY+++KL RYLNW G+ KV + G YRRE + +++FF N KIR++ AL D ++L E + Q+ ++DATN T+ERR +L F E N FF+ES+C D +I + E+K SPDY E +RE+ +DF R++ Y+ Y + D ++ S+IK+I+ G+++LVN ++ Y+QS IVYYLMNIH Q R++Y+ HGE E N+ K+GG SGL+ +G +FA+AL+++ E++ + DLK WTS K I+T++ L E W+ LN +D G C M + ++++++P F + +RYPGGE
Sbjct: 40 LIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSYDFFRHDNEEAMKIRKQCALVALEDVKAYLTE-ENGQIAVFDATNTTRERRDMILNFAEQNSFKVFFVESVCDDPDVIAANILEVKVSSPDYPERNRENVMEDFLKRIECYKVTYRPL-DPDNYDKDLSFIKVINVGQRFLVNRVQDYIQSKIVYYLMNIHVQPRTIYLCRHGESEFNLLGKIGGDSGLSVRGKQFAQALRKFLEEQEITDLKVWTSQLKRTIQTAESLGVPYEQWKILNEIDAGVCEEMTYAEIEKRYPEEF-ALRDQEKYLYRYPGGE 364 The following BLAST results are available for this feature:
BLAST of TCONS_00025798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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