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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025778 ID=TCONS_00025778|Name=TCONS_00025778|organism=Clytia hemisphaerica|type=transcript|length=1533bp
TGATAGTCGatcaatcaataaaaaatataaactagACATAAAGGGTgttc
caaaaaaagtttctcttccGATCAAATGGTCAATGaatcaataaaaaata
caaatacaaaAAAGTCCCTCGAATTTGAGCAGAATAGAAAATCAATTCTT
GCTTTTTCTACACGGTTTACAACTCCAAGTTCCTGGTTTTGCAAGTGTTT
TTCTCCCAACACATTTGGGgtggaaaaatttgaaacagGTTTTGCACTTC
ATCATGTAATCTTCGTCATTTGAACAAATACTACATTTCTCACCATCCTC
AGGTGTATCATCTGGGATAACTTCTAACTCTAGTTGTCGAGTCAAAAGTT
CGTGTAGAATGATGCGCTGCCAAAACATGTCACAATGATAAACTTTTTCT
CCGAGGAATTCTAAGTTTTTATCAATACGTATAGTAAGATACTCTTTAGG
GGTCCAAACAAAGAAATCACAATAATTTGTATCAGTTGCCAACATTTCGA
GTTGCATCTGGTAGTAATATTGATGATCTTGTTCTAAGTAATAGCTTCCA
GTAgcttcacaaaatttcacatAAAAATTGTCATTGAGAATTTCTTGCTT
CAATGAAAGATTTTCATTGTTACCTATTGTGTACGGGCATTTGACCTCCA
CTACCCCATATGAACAACAGGAACAATAAACAACCGAGTCAGGGGAAGCC
GCAAACCATGGTAAAGGAAAATAGATTGACAAACCAAATGATTTCATATC
GAAGTCACTATGGGTATAACAGTCCAAACAGCTCATGATTGGTTGGCAAT
CACCAACAATATAGTTTGGATTGCCTTGAGATTCACAATATAAGGCTAAT
GCTTCGGATTCCTTATCTCGTCCCCAAACCAGAGGCCTTGCATTGATACG
TTTGATCTTATCTGAACAAATTCCTTTTATgacgtttttgttgaaattat
CAGGCGTTGATttacaaattttctgaaaagtcGATCCAGTTATTCTACCA
GCTCTTTGCTGGTACCATGCAAAGCTTAATGATTGGTTACGTGTAGCTTC
CTCAACATACACATAAGATTCTAATGGCACTGCCTTTAGGTCTGCCATTG
TTTTTTCAACTAAAAGGTTATAATCATCAAGAGCTAAATTCACGTTGTTT
GAATTGTACAAGTATCTAAGCGACTGCGGTAACTTTGGGCGAGTTTCTTG
TGGTGGATTTTGTACCACAAATCTCTCTTGGTGTTCCCCAAAAAGACTCA
ATGCCACAGTTTCTGGTGAGTGCTCTTTGACATTCTttaagaaatcttca
aaatagtcaAGTTTCACAGCTTTGAGTGGAGGTGTTGGTTGTTCTGATGC
TTTGAGCTTTGCTTTTGCTTTGTCAGAATAAATCATGATGTTTGCAACTA
AAGCACCGTCAATATTTTTAGTAAAATTCTGATTCCACAGCTGCGGTAAG
TCAGTTGGGGTAACCCTTGTAAAGCCGATTCGAACTGCTGCTTCCATTTT
GAAGAGGATTGCTCCAACGTGTGAGCATGTTTC Run BLAST on NCBI protein sequence of TCONS_00025778-protein >TCONS_00025778-protein ID=TCONS_00025778-protein|Name=TCONS_00025778-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp
ETCSHVGAILFKMEAAVRIGFTRVTPTDLPQLWNQNFTKNIDGALVANIM
IYSDKAKAKLKASEQPTPPLKAVKLDYFEDFLKNVKEHSPETVALSLFGE
HQERFVVQNPPQETRPKLPQSLRYLYNSNNVNLALDDYNLLVEKTMADLK
AVPLESYVYVEEATRNQSLSFAWYQQRAGRITGSTFQKICKSTPDNFNKN
VIKGICSDKIKRINARPLVWGRDKESEALALYCESQGNPNYIVGDCQPIM
SCLDCYTHSDFDMKSFGLSIYFPLPWFAASPDSVVYCSCCSYGVVEVKCP
YTIGNNENLSLKQEILNDNFYVKFCEATGSYYLEQDHQYYYQMQLEMLAT
DTNYCDFFVWTPKEYLTIRIDKNLEFLGEKVYHCDMFWQRIILHELLTRQ
LELEVIPDDTPEDGEKCSICSNDEDYMMKCKTCFKFFHPKCVGRKTLAKP
GTWSCKPCRKSKN Run BLAST on NCBI transcript from alignment at sc0000545:215350..216882 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025778 ID=TCONS_00025778|Name=TCONS_00025778|organism=Clytia hemisphaerica|type=transcript|length=1533bp|location=Sequence derived from alignment at sc0000545:215350..216882 (Clytia hemisphaerica)
GAAACATGCTCACACGTTGGAGCAATCCTCTTCAAAATGGAAGCAGCAGT
TCGAATCGGCTTTACAAGGGTTACCCCAACTGACTTACCGCAGCTGTGGA
ATCAGAATTTTACTAAAAATATTGACGGTGCTTTAGTTGCAAACATCATG
ATTTATTCTGACAAAGCAAAAGCAAAGCTCAAAGCATCAGAACAACCAAC
ACCTCCACTCAAAGCTGTGAAACTtgactattttgaagatttcttaaAGA
ATGTCAAAGAGCACTCACCAGAAACTGTGGCATTGAGTCTTTTTGGGGAA
CACCAAGAGAGATTTGTGGTACAAAATCCACCACAAGAAACTCGCCCAAA
GTTACCGCAGTCGCTTAGATACTTGTACAATTCAAACAACGTGAATTTAG
CTCTTGATGATTATAACCTTTTAGTTGAAAAAACAATGGCAGACCTAAAG
GCAGTGCCATTAGAATCTTATGTGTATGTTGAGGAAGCTACACGTAACCA
ATCATTAAGCTTTGCATGGTACCAGCAAAGAGCTGGTAGAATAACTGGAT
CgacttttcagaaaatttgtaaATCAACGCCTGataatttcaacaaaaac
gtcATAAAAGGAATTTGTTCAGATAAGATCAAACGTATCAATGCAAGGCC
TCTGGTTTGGGGACGAGATAAGGAATCCGAAGCATTAGCCTTATATTGTG
AATCTCAAGGCAATCCAAACTATATTGTTGGTGATTGCCAACCAATCATG
AGCTGTTTGGACTGTTATACCCATAGTGACTTCGATATGAAATCATTTGG
TTTGTCAATCTATTTTCCTTTACCATGGTTTGCGGCTTCCCCTGACTCGG
TTGTTTATTGTTCCTGTTGTTCATATGGGGTAGTGGAGGTCAAATGCCCG
TACACAATAGGTAACAATGAAAATCTTTCATTGAAGCAAGAAATTCTCAA
TGACAATTTTTatgtgaaattttgtgaagcTACTGGAAGCTATTACTTAG
AACAAGATCATCAATATTACTACCAGATGCAACTCGAAATGTTGGCAACT
GATACAAATTATTGTGATTTCTTTGTTTGGACCCCTAAAGAGTATCTTAC
TATACGTATTGATAAAAACTTAGAATTCCTCGGAGAAAAAGTTTATCATT
GTGACATGTTTTGGCAGCGCATCATTCTACACGAACTTTTGACTCGACAA
CTAGAGTTAGAAGTTATCCCAGATGATACACCTGAGGATGGTGAGAAATG
TAGTATTTGTTCAAATGACGAAGATTACATGATGAAGTGCAAAACctgtt
tcaaatttttccacCCCAAATGTGTTGGGAGAAAAACACTTGCAAAACCA
GGAACTTGGAGTTGTAAACCGTGTAGAAAAAGCAAGAATTGATTTTCTAT
TCTGCTCAAATTCGAGGGACTTTtttgtatttgtattttttattgattCA
TTGACCATTTGATCggaagagaaactttttttggaacACCCTTTATGTct
agtttatattttttattgattgatCGACTATCA Coding sequence (CDS) from alignment at sc0000545:215350..216882 >TCONS_00025778 ID=TCONS_00025778|Name=TCONS_00025778|organism=Clytia hemisphaerica|type=CDS|length=1392bp|location=Sequence derived from alignment at sc0000545:215350..216882 (Clytia hemisphaerica)
GAAACATGCTCACACGTTGGAGCAATCCTCTTCAAAATGGAAGCAGCAGT
TCGAATCGGCTTTACAAGGGTTACCCCAACTGACTTACCGCAGCTGTGGA
ATCAGAATTTTACTAAAAATATTGACGGTGCTTTAGTTGCAAACATCATG
ATTTATTCTGACAAAGCAAAAGCAAAGCTCAAAGCATCAGAACAACCAAC
ACCTCCACTCAAAGCTGTGAAACTtgactattttgaagatttcttaaAGA
ATGTCAAAGAGCACTCACCAGAAACTGTGGCATTGAGTCTTTTTGGGGAA
CACCAAGAGAGATTTGTGGTACAAAATCCACCACAAGAAACTCGCCCAAA
GTTACCGCAGTCGCTTAGATACTTGTACAATTCAAACAACGTGAATTTAG
CTCTTGATGATTATAACCTTTTAGTTGAAAAAACAATGGCAGACCTAAAG
GCAGTGCCATTAGAATCTTATGTGTATGTTGAGGAAGCTACACGTAACCA
ATCATTAAGCTTTGCATGGTACCAGCAAAGAGCTGGTAGAATAACTGGAT
CgacttttcagaaaatttgtaaATCAACGCCTGataatttcaacaaaaac
gtcATAAAAGGAATTTGTTCAGATAAGATCAAACGTATCAATGCAAGGCC
TCTGGTTTGGGGACGAGATAAGGAATCCGAAGCATTAGCCTTATATTGTG
AATCTCAAGGCAATCCAAACTATATTGTTGGTGATTGCCAACCAATCATG
AGCTGTTTGGACTGTTATACCCATAGTGACTTCGATATGAAATCATTTGG
TTTGTCAATCTATTTTCCTTTACCATGGTTTGCGGCTTCCCCTGACTCGG
TTGTTTATTGTTCCTGTTGTTCATATGGGGTAGTGGAGGTCAAATGCCCG
TACACAATAGGTAACAATGAAAATCTTTCATTGAAGCAAGAAATTCTCAA
TGACAATTTTTatgtgaaattttgtgaagcTACTGGAAGCTATTACTTAG
AACAAGATCATCAATATTACTACCAGATGCAACTCGAAATGTTGGCAACT
GATACAAATTATTGTGATTTCTTTGTTTGGACCCCTAAAGAGTATCTTAC
TATACGTATTGATAAAAACTTAGAATTCCTCGGAGAAAAAGTTTATCATT
GTGACATGTTTTGGCAGCGCATCATTCTACACGAACTTTTGACTCGACAA
CTAGAGTTAGAAGTTATCCCAGATGATACACCTGAGGATGGTGAGAAATG
TAGTATTTGTTCAAATGACGAAGATTACATGATGAAGTGCAAAACctgtt
tcaaatttttccacCCCAAATGTGTTGGGAGAAAAACACTTGCAAAACCA
GGAACTTGGAGTTGTAAACCGTGTAGAAAAAGCAAGAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025778-exon-sc0000545-1491911889:215350..216882 | TCONS_00025778-exon-sc0000545-1491911889:215350..216882 | Clytia hemisphaerica | exon |
| TCONS_00025778-exon-sc0000545-1510915933:215350..216882 | TCONS_00025778-exon-sc0000545-1510915933:215350..216882 | Clytia hemisphaerica | exon |
| TCONS_00025778-exon-sc0000545-1575043694:215350..216882 | TCONS_00025778-exon-sc0000545-1575043694:215350..216882 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000545 | supercontig | sc0000545:215350..216882 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004518 | nuclease activity |
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0004518 |
nuclease activity |
Blast
The following BLAST results are available for this feature:
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