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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025777 ID=TCONS_00025777|Name=TCONS_00025777|organism=Clytia hemisphaerica|type=transcript|length=1154bp
AACTTAATGAGATTCCCTCCATCTCATTATCTGGAAAATAACGTTGTTAG
CCAGCTTGCAGCAAGATTCGAGAAGCACCGAAGCTTTCAAAATCAAGATA
TCAAAATATTAACGCCCTACCACCCTGTAAATCACCTCAAACTAATGGGC
GTTGATATGAAACAATGTTATGATGACATTATGACTTCGAGGTGCGATTC
ATTTGAGAATGTGGTGATCACTATCATCCCTGGTGATTGTCAAGTATTGG
TCAGTGTTGTCGTCGAGCAAACAGATGACCATTCCATACAAGAAAGCGTG
GCACAGTTGAATGACATTCTGAAGACCATTTACCACGTCAGCAGTGATCC
AATGAAAAATGGCTTCATCTCAATCACTGGTTTACTGGTGTGTCCCAACA
TTGACCAAAACAAATTCAACGCAACTGCATGCTTCAGTAAGGATTACCTG
AAATCGGAATTGTTTTTTCTCAAAGACGACTGGGATAACAATGATTCGTT
TAAACGGAAACTCGAGAAGATCCTCCACAATATGAGTAAAGAAATGAAGC
AGATTCGNAAATATTATGAATTGTTTCTTATTGTTGTAAGTAAGAAatag
ccgaatggtctaaggcgtctatggcttgtattagcgactccaggttcaaa
tcccctctgctactcaagtcttgttcagttcatactTTTATTCGCTNAAT
TGTTTTTTCTCAAAGACGACTGGGATAACAATGATTCGTTTAAACGGAAA
CTCGAGAAGATCCTCCACAATATGAGTAAAGAAATGAAGCAGATTCGACC
AGTCAAATTCAAATCCATGGAAAGCGTACTGGAGGGATTTTGCGGAGAGC
TGATGGCTTCCATGGCACAAACGACGCTCTATTTGCCGAAAGTGACGGAT
GACGTGACCACCAAAATAGACACCGTTCTATTGACAGGTGAGCAGATTGA
TATTATTAACAGCCCTGCCAACTGGAAAGTTATCAAAGGTCCATTTGGGA
GTGGAAAATCAATCATACTTCATGAGGTAGTTCGAAAACTCCTCAAAGAA
GAAAGTCAAAGCTCAATTTATTACATCAGCTTTGATCCTTACTCGCTTGT
CGACGTTAAATTTCAAGAATCTTTTGACTCTCTTTGTATCGAGGAGAATA
TGNT Run BLAST on NCBI protein sequence of TCONS_00025777-protein >TCONS_00025777-protein ID=TCONS_00025777-protein|Name=TCONS_00025777-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
NLMRFPPSHYLENNVVSQLAARFEKHRSFQNQDIKILTPYHPVNHLKLMG
VDMKQCYDDIMTSRCDSFENVVITIIPGDCQVLVSVVVEQTDDHSIQESV
AQLNDILKTIYHVSSDPMKNGFISITGLLVCPNIDQNKFNATACFSKDYL
KSELFFLKDDWDNNDSFKRKLEKILHNMSKEMKQIXKYYELFLIVVSKK Run BLAST on NCBI transcript from alignment at sc0000545:177519..178672 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025777 ID=TCONS_00025777|Name=TCONS_00025777|organism=Clytia hemisphaerica|type=transcript|length=1154bp|location=Sequence derived from alignment at sc0000545:177519..178672 (Clytia hemisphaerica)
ANCATATTCTCCTCGATACAAAGAGAGTCAAAAGATTCTTGAAATTTAAC
GTCGACAAGCGAGTAAGGATCAAAGCTGATGTAATAAATTGAGCTTTGAC
TTTCTTCTTTGAGGAGTTTTCGAACTACCTCATGAAGTATGATTGATTTT
CCACTCCCAAATGGACCTTTGATAACTTTCCAGTTGGCAGGGCTGTTAAT
AATATCAATCTGCTCACCTGTCAATAGAACGGTGTCTATTTTGGTGGTCA
CGTCATCCGTCACTTTCGGCAAATAGAGCGTCGTTTGTGCCATGGAAGCC
ATCAGCTCTCCGCAAAATCCCTCCAGTACGCTTTCCATGGATTTGAATTT
GACTGGTCGAATCTGCTTCATTTCTTTACTCATATTGTGGAGGATCTTCT
CGAGTTTCCGTTTAAACGAATCATTGTTATCCCAGTCGTCTTTGAGAAAA
AACAATTNAGCGAATAAAagtatgaactgaacaagacttgagtagcagag
gggatttgaacctggagtcgctaatacaagccatagacgccttagaccat
tcggctatTTCTTACTTACAACAATAAGAAACAATTCATAATATTTNCGA
ATCTGCTTCATTTCTTTACTCATATTGTGGAGGATCTTCTCGAGTTTCCG
TTTAAACGAATCATTGTTATCCCAGTCGTCTTTGAGAAAAAACAATTCCG
ATTTCAGGTAATCCTTACTGAAGCATGCAGTTGCGTTGAATTTGTTTTGG
TCAATGTTGGGACACACCAGTAAACCAGTGATTGAGATGAAGCCATTTTT
CATTGGATCACTGCTGACGTGGTAAATGGTCTTCAGAATGTCATTCAACT
GTGCCACGCTTTCTTGTATGGAATGGTCATCTGTTTGCTCGACGACAACA
CTGACCAATACTTGACAATCACCAGGGATGATAGTGATCACCACATTCTC
AAATGAATCGCACCTCGAAGTCATAATGTCATCATAACATTGTTTCATAT
CAACGCCCATTAGTTTGAGGTGATTTACAGGGTGGTAGGGCGTTAATATT
TTGATATCTTGATTTTGAAAGCTTCGGTGCTTCTCGAATCTTGCTGCAAG
CTGGCTAACAACGTTATTTTCCAGATAATGAGATGGAGGGAATCTCATTA
AGTT Coding sequence (CDS) from alignment at sc0000545:177519..178672 >TCONS_00025777 ID=TCONS_00025777|Name=TCONS_00025777|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0000545:177519..178672 (Clytia hemisphaerica)
ctatTTCTTACTTACAACAATAAGAAACAATTCATAATATTTNCGAATCT
GCTTCATTTCTTTACTCATATTGTGGAGGATCTTCTCGAGTTTCCGTTTA
AACGAATCATTGTTATCCCAGTCGTCTTTGAGAAAAAACAATTCCGATTT
CAGGTAATCCTTACTGAAGCATGCAGTTGCGTTGAATTTGTTTTGGTCAA
TGTTGGGACACACCAGTAAACCAGTGATTGAGATGAAGCCATTTTTCATT
GGATCACTGCTGACGTGGTAAATGGTCTTCAGAATGTCATTCAACTGTGC
CACGCTTTCTTGTATGGAATGGTCATCTGTTTGCTCGACGACAACACTGA
CCAATACTTGACAATCACCAGGGATGATAGTGATCACCACATTCTCAAAT
GAATCGCACCTCGAAGTCATAATGTCATCATAACATTGTTTCATATCAAC
GCCCATTAGTTTGAGGTGATTTACAGGGTGGTAGGGCGTTAATATTTTGA
TATCTTGATTTTGAAAGCTTCGGTGCTTCTCGAATCTTGCTGCAAGCTGG
CTAACAACGTTATTTTCCAGATAATGAGATGGAGGGAATCTCATTAAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025777-exon-sc0000545-1491911889:177519..178672 | TCONS_00025777-exon-sc0000545-1491911889:177519..178672 | Clytia hemisphaerica | exon |
| TCONS_00025777-exon-sc0000545-1510915933:177519..178672 | TCONS_00025777-exon-sc0000545-1510915933:177519..178672 | Clytia hemisphaerica | exon |
| TCONS_00025777-exon-sc0000545-1575043694:177519..178672 | TCONS_00025777-exon-sc0000545-1575043694:177519..178672 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000545 | supercontig | sc0000545:177519..178672 . |
Blast
The following BLAST results are available for this feature:
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