TCONS_00025772 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025772
Unique NameTCONS_00025772
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025772 ID=TCONS_00025772|Name=TCONS_00025772|organism=Clytia hemisphaerica|type=transcript|length=615bp
CTCACGTTAAAACAATTTGAAGTCCTTTCCCTTTCTGGGACCTGGTTTTG
TCCGAACTGCATCAATTACTCCCTTCCTTTTCCTGTTGAATTAAACATTA
ATAATTCTAATGGTAATGCTCCTGGTGACACGAGTGATAAACTTCGTTCC
TTAATATCTGATCTCAACAAGGTCGTCACTAGCCTTAGTGACGAAATTGA
TGATGAGCTTGAATTTCAGTTTCAAGCTCATAGCTGTAGTTATGTTGACT
GCGATGAATTCAAATCGCTTGCAGCCAACACTCCATCTAAATTTTCTGCC
TTTCACCTGAACATTTCTTCACTCTCAAAACATTTTGACGACCTTGAAGA
CTTGCTTGCCCTCCTCAATTCTAAATTTAGTGTCATAGGGATTTCAGAAA
CCAAAAGCCTTGTTGACACCGAAACAGAAAGTCCTCTCGAAAAAAAAGAG
GACTTTGCTATACCAGGTtacgaaattttttttaaaccaactGAATCTTC
TAAAGGTGGAGTGGCCTTATATATTTCACACTCTTTCTCTTACAAACCTA
GGACAGACCTAGACCAAGTTTGCTATTCTTCCTGTAGTCTTGAATCATGC
TTTGCTGAAATTATC
Run BLAST on NCBI

protein sequence of TCONS_00025772-protein

>TCONS_00025772-protein ID=TCONS_00025772-protein|Name=TCONS_00025772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
LTLKQFEVLSLSGTWFCPNCINYSLPFPVELNINNSNGNAPGDTSDKLRS
LISDLNKVVTSLSDEIDDELEFQFQAHSCSYVDCDEFKSLAANTPSKFSA
FHLNISSLSKHFDDLEDLLALLNSKFSVIGISETKSLVDTETESPLEKKE
DFAIPGYEIFFKPTESSKGGVALYISHSFSYKPRTDLDQVCYSSCSLESC
FAEII
Run BLAST on NCBI

transcript from alignment at sc0000545:99911..100525

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025772 ID=TCONS_00025772|Name=TCONS_00025772|organism=Clytia hemisphaerica|type=transcript|length=615bp|location=Sequence derived from alignment at sc0000545:99911..100525 (Clytia hemisphaerica)
GATAATTTCAGCAAAGCATGATTCAAGACTACAGGAAGAATAGCAAACTT
GGTCTAGGTCTGTCCTAGGTTTGTAAGAGAAAGAGTGTGAAATATATAAG
GCCACTCCACCTTTAGAAGATTCagttggtttaaaaaaaatttcgtaACC
TGGTATAGCAAAGTCCTCTTTTTTTTCGAGAGGACTTTCTGTTTCGGTGT
CAACAAGGCTTTTGGTTTCTGAAATCCCTATGACACTAAATTTAGAATTG
AGGAGGGCAAGCAAGTCTTCAAGGTCGTCAAAATGTTTTGAGAGTGAAGA
AATGTTCAGGTGAAAGGCAGAAAATTTAGATGGAGTGTTGGCTGCAAGCG
ATTTGAATTCATCGCAGTCAACATAACTACAGCTATGAGCTTGAAACTGA
AATTCAAGCTCATCATCAATTTCGTCACTAAGGCTAGTGACGACCTTGTT
GAGATCAGATATTAAGGAACGAAGTTTATCACTCGTGTCACCAGGAGCAT
TACCATTAGAATTATTAATGTTTAATTCAACAGGAAAAGGAAGGGAGTAA
TTGATGCAGTTCGGACAAAACCAGGTCCCAGAAAGGGAAAGGACTTCAAA
TTGTTTTAACGTGAG

Coding sequence (CDS) from alignment at sc0000545:99911..100525

>TCONS_00025772 ID=TCONS_00025772|Name=TCONS_00025772|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at sc0000545:99911..100525 (Clytia hemisphaerica)
GATAATTTCAGCAAAGCATGATTCAAGACTACAGGAAGAATAGCAAACTT
GGTCTAGGTCTGTCCTAGGTTTGTAAGAGAAAGAGTGTGAAATATATAAG
GCCACTCCACCTTTAGAAGATTCagttggtttaaaaaaaatttcgtaACC
TGGTATAGCAAAGTCCTCTTTTTTTTCGAGAGGACTTTCTGTTTCGGTGT
CAACAAGGCTTTTGGTTTCTGAAATCCCTATGACACTAAATTTAGAATTG
AGGAGGGCAAGCAAGTCTTCAAGGTCGTCAAAATGTTTTGAGAGTGAAGA
AATGTTCAGGTGAAAGGCAGAAAATTTAGATGGAGTGTTGGCTGCAAGCG
ATTTGAATTCATCGCAGTCAACATAACTACAGCTATGAGCTTGAAACTGA
AATTCAAGCTCATCATCAATTTCGTCACTAAGGCTAGTGACGACCTTGTT
GAGATCAGATATTAAGGAACGAAGTTTATCACTCGTGTCACCAGGAGCAT
TACCATTAGAATTATTAATGTTTAATTCAACAGGAAAAGGAAGGGAGTAA
TTGATGCAGTTCGGACAAAACCAGGTCCCAGAAAGGGAAAGGACTTCAAA
TTGTTTTAACGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014478XLOC_014478Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025772-exon-sc0000545-1491911889:99911..100525TCONS_00025772-exon-sc0000545-1491911889:99911..100525Clytia hemisphaericaexon
TCONS_00025772-exon-sc0000545-1510915933:99911..100525TCONS_00025772-exon-sc0000545-1510915933:99911..100525Clytia hemisphaericaexon
TCONS_00025772-exon-sc0000545-1575043694:99911..100525TCONS_00025772-exon-sc0000545-1575043694:99911..100525Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025772-proteinTCONS_00025772-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000545supercontigsc0000545:99911..100525 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.83727	1.57551	3.11395	4.47323	4.02164	3.14561	2.72258	3.20843	1.17778	1.44011	1.39435	2.33795	0.815311	0.8945	1.12927	0.850712	1.33368	0.907272	1.17228	1.16082	2.5908	1.7886	0.109425	0.729882	2.40655	2.22419	1.31924	1.1453	1.15808	1.59675
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top