TCONS_00025771 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025771
Unique NameTCONS_00025771
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025771 ID=TCONS_00025771|Name=TCONS_00025771|organism=Clytia hemisphaerica|type=transcript|length=634bp
NTTCCGATCTTACCTCACTAACCGCTCCCAGTATGTTTCTCTTGCaggct
caaattcccttttaaaatctattaatcaTGGAGTTCCTCAGGGTTCAGTC
TTGCGTCCTCTGCTGTTTTTGTTGTATATAAACGATCTTCACCGCTGTAT
AAGAATCTCTGAAACAtatcattttgctgatgatactcatttactaaatt
tttcaaaaactgtatggaGTCTTTGTGGGAGGGTTAATGCTGATCTCAGA
GTTTTAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAGCTGGCTTAatgccaacaaaatttctttgaatgctagcaaaac
tgagtttgttatttttcgttCCCCTTGGAGACAGATGGACTGTATTCCAA
GAATTATGCTTTGCGGGAAAATTCTATCACCAAGTAAGAGTGTGAAGTAT
TTGGGTGTTCACCTTGACAATCATCTAAACTGGAAGGTTCATACTTCTTT
CGTTGCTGCTACATTGAGAAGGGCAAATTGGGCAATATCCGAACTTCGTC
ACGATGTTCCAATTCACAtccttctaaacattta
Run BLAST on NCBI

protein sequence of TCONS_00025771-protein

>TCONS_00025771-protein ID=TCONS_00025771-protein|Name=TCONS_00025771-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
FRSYLTNRSQYVSLAGSNSLLKSINHGVPQGSVLRPLLFLLYINDLHRCI
RISETYHFADDTHLLNFSKTVWSLCGRVNADLRVLVXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXLA
Run BLAST on NCBI

transcript from alignment at sc0000545:97224..97857

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025771 ID=TCONS_00025771|Name=TCONS_00025771|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at sc0000545:97224..97857 (Clytia hemisphaerica)
taaatgtttagaaggaTGTGAATTGGAACATCGTGACGAAGTTCGGATAT
TGCCCAATTTGCCCTTCTCAATGTAGCAGCAACGAAAGAAGTATGAACCT
TCCAGTTTAGATGATTGTCAAGGTGAACACCCAAATACTTCACACTCTTA
CTTGGTGATAGAATTTTCCCGCAAAGCATAATTCTTGGAATACAGTCCAT
CTGTCTCCAAGGGGaacgaaaaataacaaactcagttttgctagcattca
aagaaattttgttggcatTAAGCCAGCTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGACTAAAACTCTGAGATCAGCATTA
ACCCTCCCACAAAGACtccatacagtttttgaaaaatttagtaaatgagt
atcatcagcaaaatgataTGTTTCAGAGATTCTTATACAGCGGTGAAGAT
CGTTTATATACAACAAAAACAGCAGAGGACGCAAGACTGAACCCTGAGGA
ACTCCAtgattaatagattttaaaagggaatttgagcctGCAAGAGAAAC
ATACTGGGAGCGGTTAGTGAGGTAAGATCGGAAN

Coding sequence (CDS) from alignment at sc0000545:97224..97857

>TCONS_00025771 ID=TCONS_00025771|Name=TCONS_00025771|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0000545:97224..97857 (Clytia hemisphaerica)
tTAAGCCAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGACTAAAACTCTGAGATCAGCATTAACCCTCCCACAAAGACt
ccatacagtttttgaaaaatttagtaaatgagtatcatcagcaaaatgat
aTGTTTCAGAGATTCTTATACAGCGGTGAAGATCGTTTATATACAACAAA
AACAGCAGAGGACGCAAGACTGAACCCTGAGGAACTCCAtgattaataga
ttttaaaagggaatttgagcctGCAAGAGAAACATACTGGGAGCGGTTAG
TGAGGTAAGATCGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014477XLOC_014477Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025771-proteinTCONS_00025771-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025771-exon-sc0000545-1491911889:97224..97857TCONS_00025771-exon-sc0000545-1491911889:97224..97857Clytia hemisphaericaexon
TCONS_00025771-exon-sc0000545-1510915933:97224..97857TCONS_00025771-exon-sc0000545-1510915933:97224..97857Clytia hemisphaericaexon
TCONS_00025771-exon-sc0000545-1575043694:97224..97857TCONS_00025771-exon-sc0000545-1575043694:97224..97857Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000545supercontigsc0000545:97224..97857 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.07953	0.594984	4.02664	3.11624	1.12477	0.969882	1.5342	1.40653	1.22923	0.902822	0	0.898749	2.51479	2.27392	0.699738	0.720516	1.01226	0.542415	0.650552	1.8226	1.69632	1.81842	0.447165	0	1.50674	0.786111	1.27838	3.43674	1.05032	0.781635
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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