TCONS_00025765 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025765
Unique NameTCONS_00025765
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length556

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025765 ID=TCONS_00025765|Name=TCONS_00025765|organism=Clytia hemisphaerica|type=transcript|length=556bp
aaaggaaagaaagaggcaCGATAGCGCTCGGTTCTACAGAAAGGTGCCTC
GAGTGGTGGTTTTATCCTTCGCCCTGCATTGCGCTCTTCCTCTCCTCTCT
AGTTTGCCAGGCTTTCAAATCCTAGCTCAAGGTAGATTTTTTCTCTAGAT
GTTCCTCTGAAGCATCCGGTTATTGCAAGACAAGCATCATATTGAACAGA
CTCGAGTTTTTCAGAGAATGAGGAATTACCAGGACGATCATATACGATAT
CTCCATAATCTAAGTGTGGTCTAATATAGGTTTTGTATATAGTGACAAGA
GAATCCCTGAGTAGAAACTTGCGAAGTCTGCGAATAAGACCAATACCTTG
ATTagccttttttaatttttcatcaaggtgacggtcaaaggccagctttt
gatcgagtatgagaccaagatgtttttgatgatcctGAACTGCAATGGCT
GCATTATTGAACCTAATTTCTGGAGGGTCAGGTGGATTTAGCCTCCTGGT
AAAGTACACTTCAACTGCCTGTTTAGAAGGATCAGGGTTGAAGGACATTT
TCCATT
Run BLAST on NCBI

protein sequence of TCONS_00025765-protein

>TCONS_00025765-protein ID=TCONS_00025765-protein|Name=TCONS_00025765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
WKMSFNPDPSKQAVEVYFTRRLNPPDPPEIRFNNAAIAVQDHQKHLGLIL
DQKLAFDRHLDEKLKKANQGIGLIRRLRKFLLRDSLVTIYKTYIRPHLDY
GDIVYDRPGNSSFSEKLESVQYDACLAITGCFRGTSREKIYLELGFESLA
N
Run BLAST on NCBI

transcript from alignment at sc0000545:27224..27779

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025765 ID=TCONS_00025765|Name=TCONS_00025765|organism=Clytia hemisphaerica|type=transcript|length=556bp|location=Sequence derived from alignment at sc0000545:27224..27779 (Clytia hemisphaerica)
AATGGAAAATGTCCTTCAACCCTGATCCTTCTAAACAGGCAGTTGAAGTG
TACTTTACCAGGAGGCTAAATCCACCTGACCCTCCAGAAATTAGGTTCAA
TAATGCAGCCATTGCAGTTCaggatcatcaaaaacatcttggtctcatac
tcgatcaaaagctggcctttgaccgtcaccttgatgaaaaattaaaaaag
gctAATCAAGGTATTGGTCTTATTCGCAGACTTCGCAAGTTTCTACTCAG
GGATTCTCTTGTCACTATATACAAAACCTATATTAGACCACACTTAGATT
ATGGAGATATCGTATATGATCGTCCTGGTAATTCCTCATTCTCTGAAAAA
CTCGAGTCTGTTCAATATGATGCTTGTCTTGCAATAACCGGATGCTTCAG
AGGAACATCTAGAGAAAAAATCTACCTTGAGCTAGGATTTGAAAGCCTGG
CAAACTAGAGAGGAGAGGAAGAGCGCAATGCAGGGCGAAGGATAAAACCA
CCACTCGAGGCACCTTTCTGTAGAACCGAGCGCTATCGtgcctctttctt
tccttt

Coding sequence (CDS) from alignment at sc0000545:27224..27779

>TCONS_00025765 ID=TCONS_00025765|Name=TCONS_00025765|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at sc0000545:27224..27779 (Clytia hemisphaerica)
TGGAAAATGTCCTTCAACCCTGATCCTTCTAAACAGGCAGTTGAAGTGTA
CTTTACCAGGAGGCTAAATCCACCTGACCCTCCAGAAATTAGGTTCAATA
ATGCAGCCATTGCAGTTCaggatcatcaaaaacatcttggtctcatactc
gatcaaaagctggcctttgaccgtcaccttgatgaaaaattaaaaaaggc
tAATCAAGGTATTGGTCTTATTCGCAGACTTCGCAAGTTTCTACTCAGGG
ATTCTCTTGTCACTATATACAAAACCTATATTAGACCACACTTAGATTAT
GGAGATATCGTATATGATCGTCCTGGTAATTCCTCATTCTCTGAAAAACT
CGAGTCTGTTCAATATGATGCTTGTCTTGCAATAACCGGATGCTTCAGAG
GAACATCTAGAGAAAAAATCTACCTTGAGCTAGGATTTGAAAGCCTGGCA
AACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014471XLOC_014471Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025765-proteinTCONS_00025765-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025765-exon-sc0000545-1491911889:27224..27779TCONS_00025765-exon-sc0000545-1491911889:27224..27779Clytia hemisphaericaexon
TCONS_00025765-exon-sc0000545-1510915933:27224..27779TCONS_00025765-exon-sc0000545-1510915933:27224..27779Clytia hemisphaericaexon
TCONS_00025765-exon-sc0000545-1575043694:27224..27779TCONS_00025765-exon-sc0000545-1575043694:27224..27779Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000545supercontigsc0000545:27224..27779 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.37006	1.5184	3.3982	5.23042	2.54219	2.82687	5.09255	6.02991	3.35996	3.44609	3.9362	1.75503	2.82586	2.11848	1.99198	2.26889	2.92241	2.84252	1.24669	2.66081	2.52828	3.70535	0.898066	1.3855	1.69093	1.29183	3.96664	1.46169	2.8052	1.2718
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025765 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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