|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025764 ID=TCONS_00025764|Name=TCONS_00025764|organism=Clytia hemisphaerica|type=transcript|length=784bp
CGAGTGTCTAGAGGTGGATCAACATCAAAACCATTCAGAATGTCGTGTGT
TATGGATAACAGCTGAGACACACAAGAGTCACCCTTGCGGAAGCCAGACT
GGGAATTTGTGAAAAGATTGCTGTTTTCGAAATAGGTGTCGACGGAGTCA
AAGATacacttttcaaagatttttccaaaaataggcaggAGAGACACTGG
TCTATAGTTTTTTACTACACTCTTGTCCCCTTTATTTTTGAATATAGGAA
CAACATTAGCCTTTTTCCAGTTTGATGGAAAAATGCATGAATCTAAAGAA
TATTGATAGATCTTCATAAGAGGTTTAACCAAGGATTCGTCACAGACCAT
CTGTATAGAGATGTTATCCCAACCATGCgctttgttagttttaagtcccC
GAATGAGGGCTAAAATTTTGACTTGATCGAGAGGTATATTGTTTATTCTG
AGATTAGTTACATAGTTGTGTTGCGGCAATACACTATCAGTGTCTATGAG
AGAGCACTGATTTGCAAagaattgattaaaaatatttgttttcgtTGGAA
CATCAGCAATAAGATTATTGCTGGCATCTCGAACAGGTGGAATCCTTGGT
GACTTCCTCCTATGAAGAGATTGATTTAGaatagaccagtatttcttagA
ACCCCAAGTTTGGATCATTGAAGTTATTTGCTAAGCGAGAGAAATAAAAA
TCTTTAGCATCCCTGACAGCCCTTCTACACCTAGATTGATGTTCTTGGAG
GATTTTGAGGTCTTCTTTTCTCCTCCCATTTTTT Run BLAST on NCBI protein sequence of TCONS_00025764-protein >TCONS_00025764-protein ID=TCONS_00025764-protein|Name=TCONS_00025764-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MIQTWGSKKYWSILNQSLHRRKSPRIPPVRDASNNLIADVPTKTNIFNQF
FANQCSLIDTDSVLPQHNYVTNLRINNIPLDQVKILALIRGLKTNKAHGW
DNISIQMVCDESLVKPLMKIYQYSLDSCIFPSNWKKANVVPIFKNKGDKS
VVKNYRPVSLLPIFGKIFEKCIFDSVDTYFENSNLFTNSQSGFRKGDSCV
SQLLSITHDILNGFDVDPPLDT Run BLAST on NCBI transcript from alignment at sc0000545:25832..26615 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025764 ID=TCONS_00025764|Name=TCONS_00025764|organism=Clytia hemisphaerica|type=transcript|length=784bp|location=Sequence derived from alignment at sc0000545:25832..26615 (Clytia hemisphaerica)
AAAAAATGGGAGGAGAAAAGAAGACCTCAAAATCCTCCAAGAACATCAAT
CTAGGTGTAGAAGGGCTGTCAGGGATGCTAAAGATTTTTATTTCTCTCGC
TTAGCAAATAACTTCAATGATCCAAACTTGGGGTTctaagaaatactggt
ctattCTAAATCAATCTCTTCATAGGAGGAAGTCACCAAGGATTCCACCT
GTTCGAGATGCCAGCAATAATCTTATTGCTGATGTTCCAacgaaaacaaa
tatttttaatcaattctTTGCAAATCAGTGCTCTCTCATAGACACTGATA
GTGTATTGCCGCAACACAACTATGTAACTAATCTCAGAATAAACAATATA
CCTCTCGATCAAGTCAAAATTTTAGCCCTCATTCGgggacttaaaactaa
caaagcGCATGGTTGGGATAACATCTCTATACAGATGGTCTGTGACGAAT
CCTTGGTTAAACCTCTTATGAAGATCTATCAATATTCTTTAGATTCATGC
ATTTTTCCATCAAACTGGAAAAAGGCTAATGTTGTTCCTATATTCAAAAA
TAAAGGGGACAAGAGTGTAGTAAAAAACTATAGACCAGTGTCTCTcctgc
ctatttttggaaaaatctttgaaaagtgtATCTTTGACTCCGTCGACACC
TATTTCGAAAACAGCAATCTTTTCACAAATTCCCAGTCTGGCTTCCGCAA
GGGTGACTCTTGTGTGTCTCAGCTGTTATCCATAACACACGACATTCTGA
ATGGTTTTGATGTTGATCCACCTCTAGACACTCG Coding sequence (CDS) from alignment at sc0000545:25832..26615 >TCONS_00025764 ID=TCONS_00025764|Name=TCONS_00025764|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at sc0000545:25832..26615 (Clytia hemisphaerica)
ATGATCCAAACTTGGGGTTctaagaaatactggtctattCTAAATCAATC
TCTTCATAGGAGGAAGTCACCAAGGATTCCACCTGTTCGAGATGCCAGCA
ATAATCTTATTGCTGATGTTCCAacgaaaacaaatatttttaatcaattc
tTTGCAAATCAGTGCTCTCTCATAGACACTGATAGTGTATTGCCGCAACA
CAACTATGTAACTAATCTCAGAATAAACAATATACCTCTCGATCAAGTCA
AAATTTTAGCCCTCATTCGgggacttaaaactaacaaagcGCATGGTTGG
GATAACATCTCTATACAGATGGTCTGTGACGAATCCTTGGTTAAACCTCT
TATGAAGATCTATCAATATTCTTTAGATTCATGCATTTTTCCATCAAACT
GGAAAAAGGCTAATGTTGTTCCTATATTCAAAAATAAAGGGGACAAGAGT
GTAGTAAAAAACTATAGACCAGTGTCTCTcctgcctatttttggaaaaat
ctttgaaaagtgtATCTTTGACTCCGTCGACACCTATTTCGAAAACAGCA
ATCTTTTCACAAATTCCCAGTCTGGCTTCCGCAAGGGTGACTCTTGTGTG
TCTCAGCTGTTATCCATAACACACGACATTCTGAATGGTTTTGATGTTGA
TCCACCTCTAGACACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025764-exon-sc0000545-1491911889:25832..26615 | TCONS_00025764-exon-sc0000545-1491911889:25832..26615 | Clytia hemisphaerica | exon |
| TCONS_00025764-exon-sc0000545-1510915933:25832..26615 | TCONS_00025764-exon-sc0000545-1510915933:25832..26615 | Clytia hemisphaerica | exon |
| TCONS_00025764-exon-sc0000545-1575043694:25832..26615 | TCONS_00025764-exon-sc0000545-1575043694:25832..26615 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000545 | supercontig | sc0000545:25832..26615 . |
Blast
The following BLAST results are available for this feature:
|
