TCONS_00025763 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025763
Unique NameTCONS_00025763
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1561

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025763 ID=TCONS_00025763|Name=TCONS_00025763|organism=Clytia hemisphaerica|type=transcript|length=1561bp
CACTTGTGACATCCGACCCTGATTACGTACCatctatttttccaaaaaag
ccaTTGTCTTCAACCGCGTCCAAATCGCCAAAGGCTAAGAAGTACAGAAC
AGTTGCAAGTCCACATCGTCAAAAGCTAGAGAGACATCAAAGGAAAGTTT
TACGCCagtcaaaaactaaaaacaaagAAATGTCACGAAGGCTACGACTT
CAAAGCCCTGATTTCCAACCGACATCTCCAATCCGAATGCCAGATCAAAG
TCAAGCCGTTCCAAATATAAACGAGGAAAATGAAGGAATAAGTGATGACA
TCAAAATGCCTGATGAAAATGAAGCTAAATGTGATCATTCCAGCCATAAA
AATGATTTACATTCTGAAGAGCTAAAACGAATTTATGAGGAGATGAACAA
TTTGCGTTTGGAAAGGGATCAATTGAAAAAAGAGAATGAAGAATTGAAAC
ATTCAATGGCATCTTCTGGACTGAGATATCAGGCTATTAATGATGATGAG
GCAAAATGCTTACTGTTAACAGGATTGAAACCAAAGGTTTTAAAATCTGT
AATTGATTATTTGAAGAAGGCTCGTAGCCCTTCCCAGAAACCACCAAAAC
ATTCAATGGAGGACCAGATTTTGCTTACCATCATTAAATTGAAGCATAAT
CTTGTTTTTGAACTACTGGCTCTGATCTTTGGTGTTTCACTAACAACGAC
CATAGACTATTTCTGGAGTTGGATTGATATTATGTACATTAATTTGAAAC
GCCTCATTAAAATGCAAGATAGAGACAACATTTTTCGAACTATACCGGCA
CATTTCAAGTGTAAATTTCCAAGGTTGACATCTATAATTGATTGCTTTGA
GGTATTTGTTGAAGCCCCTAGCTCCCTTTTAGCAAGAGCCCAATTTTACT
CACAGTACAAGAAACATACAACcatcaaagtttttatttcgTGTACACCC
CTTGGTGCGATAAATTATGTATCTCAGTGCTATGGTGGTAGAGCTTCTGA
TGTACAAGTTGTGAAGGAGTCTGGCTTCCATACTTCTAAGTTTCACATGC
CTGGTGACCAAATATTGGCAGATCGTGGCTTTACCTTGGTTGAGGAATTT
GCTGCCGGAAGCTCTACGGAATTGCTGATTCCTGCCTTCACGAAGGGAAA
AACTCAACTTTCAGCCAAAGAAGTAGAAGTTTCACACAAGATAGCATCGG
TGAGGATTCACATTGAAAGGGTAATCGGGCTATTACGTAATAGATACACT
ATTTTGAAAGGAATAATTCCCTTACGACTAATAAAAAGTATTAAAGATGA
AAACAGTTCTTCAATAATCGCCAACTGTGACAAATTGGTTGTTGTATGCT
CAGCCCTGACGAATTTGAATGCAAGTATAGTATTTGATAAGGATAAACCA
CTACCAAATACTAGATTGATATCTGACACTTTGTAGCTGATTGCTAATCA
TGCAGTGTGCTAATGTACAAATTGATACACACCTATGAACTGTTGATTGG
ATCTTGGATTTACTTCAACGTTTTTTTACATtaactattttttttatttt
tttattcagaG
Run BLAST on NCBI

protein sequence of TCONS_00025763-protein

>TCONS_00025763-protein ID=TCONS_00025763-protein|Name=TCONS_00025763-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp
LVTSDPDYVPSIFPKKPLSSTASKSPKAKKYRTVASPHRQKLERHQRKVL
RQSKTKNKEMSRRLRLQSPDFQPTSPIRMPDQSQAVPNINEENEGISDDI
KMPDENEAKCDHSSHKNDLHSEELKRIYEEMNNLRLERDQLKKENEELKH
SMASSGLRYQAINDDEAKCLLLTGLKPKVLKSVIDYLKKARSPSQKPPKH
SMEDQILLTIIKLKHNLVFELLALIFGVSLTTTIDYFWSWIDIMYINLKR
LIKMQDRDNIFRTIPAHFKCKFPRLTSIIDCFEVFVEAPSSLLARAQFYS
QYKKHTTIKVFISCTPLGAINYVSQCYGGRASDVQVVKESGFHTSKFHMP
GDQILADRGFTLVEEFAAGSSTELLIPAFTKGKTQLSAKEVEVSHKIASV
RIHIERVIGLLRNRYTILKGIIPLRLIKSIKDENSSSIIANCDKLVVVCS
ALTNLNASIVFDKDKPLPNTRLISDTL
Run BLAST on NCBI

transcript from alignment at sc0000545:218427..220252-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025763 ID=TCONS_00025763|Name=TCONS_00025763|organism=Clytia hemisphaerica|type=transcript|length=1826bp|location=Sequence derived from alignment at sc0000545:218427..220252- (Clytia hemisphaerica)
CACTTGTGACATCCGACCCTGATTACGTACCATCTATTTTTCCAAAAAAG
CCATTGTCTTCAACCGCGTCCAAATCGCCAAAGGCTAAGAAGTACAGAAC
AGTTGCAAGTCCACATCGTCAAAAGCTAGAGAGACATCAAAGGAAAGTTT
TACGCCAGTCAAAAACTAAAAACAAAGGTATATTTTTAATTTGATATTTT
TTAATTTAATTTGTTTACAAAAATCCACTGTTATTTTGTATTTTGGTAGG
TGTTGGGTTACTACTGGCTGATTAGCAGGGAATTAAAAAATCAGGTTTTC
TTTCAAAATTCACTAGACACATAATAATAATATAATAATATCTATCAGAG
AAAGCTTTTTGTTTCAGTAATGACAAGAAGAACATATAGTGTTCCTGACT
GAGCCATTTTTATGCTTTTAACTCTTTAATTTTTGGATCTAGAAATGTCA
CGAAGGCTACGACTTCAAAGCCCTGATTTCCAACCGACATCTCCAATCCG
AATGCCAGATCAAAGTCAAGCCGTTCCAAATATAAACGAGGAAAATGAAG
GAATAAGTGATGACATCAAAATGCCTGATGAAAATGAAGCTAAATGTGAT
CATTCCAGCCATAAAAATGATTTACATTCTGAAGAGCTAAAACGAATTTA
TGAGGAGATGAACAATTTGCGTTTGGAAAGGGATCAATTGAAAAAAGAGA
ATGAAGAATTGAAACATTCAATGGCATCTTCTGGACTGAGATATCAGGCT
ATTAATGATGATGAGGCAAAATGCTTACTGTTAACAGGATTGAAACCAAA
GGTTTTAAAATCTGTAATTGATTATTTGAAGAAGGCTCGTAGCCCTTCCC
AGAAACCACCAAAACATTCAATGGAGGACCAGATTTTGCTTACCATCATT
AAATTGAAGCATAATCTTGTTTTTGAACTACTGGCTCTGATCTTTGGTGT
TTCACTAACAACGACCATAGACTATTTCTGGAGTTGGATTGATATTATGT
ACATTAATTTGAAACGCCTCATTAAAATGCAAGATAGAGACAACATTTTT
CGAACTATACCGGCACATTTCAAGTGTAAATTTCCAAGGTTGACATCTAT
AATTGATTGCTTTGAGGTATTTGTTGAAGCCCCTAGCTCCCTTTTAGCAA
GAGCCCAATTTTACTCACAGTACAAGAAACATACAACCATCAAAGTTTTT
ATTTCGTGTACACCCCTTGGTGCGATAAATTATGTATCTCAGTGCTATGG
TGGTAGAGCTTCTGATGTACAAGTTGTGAAGGAGTCTGGCTTCCATACTT
CTAAGTTTCACATGCCTGGTGACCAAATATTGGCAGATCGTGGCTTTACC
TTGGTTGAGGAATTTGCTGCCGGAAGCTCTACGGAATTGCTGATTCCTGC
CTTCACGAAGGGAAAAACTCAACTTTCAGCCAAAGAAGTAGAAGTTTCAC
ACAAGATAGCATCGGTGAGGATTCACATTGAAAGGGTAATCGGGCTATTA
CGTAATAGATACACTATTTTGAAAGGAATAATTCCCTTACGACTAATAAA
AAGTATTAAAGATGAAAACAGTTCTTCAATAATCGCCAACTGTGACAAAT
TGGTTGTTGTATGCTCAGCCCTGACGAATTTGAATGCAAGTATAGTATTT
GATAAGGATAAACCACTACCAAATACTAGATTGATATCTGACACTTTGTA
GCTGATTGCTAATCATGCAGTGTGCTAATGTACAAATTGATACACACCTA
TGAACTGTTGATTGGATCTTGGATTTACTTCAACGTTTTTTTACATTAAC
TATTTTTTTTATTTTTTTATTCAGAG

Coding sequence (CDS) from alignment at sc0000545:218427..220252-

>TCONS_00025763 ID=TCONS_00025763|Name=TCONS_00025763|organism=Clytia hemisphaerica|type=CDS|length=2868bp|location=Sequence derived from alignment at sc0000545:218427..220252- (Clytia hemisphaerica)
AAATGTCACGAAGGCTACGACTTCAAAGCCCTGATTTCCAACCGACATCT
CCAATCCGAATGCCAGATCAAAGTCAAGCCGTTCCAAATATAAACGAGGA
AAATGAAGGAATAAGTGATGACATCAAAATGCCTGATGAAAATGAAGCTA
AATGTGATCATTCCAGCCATAAAAATGATTTACATTCTGAAGAGCTAAAA
CGAATTTATGAGGAGATGAACAATTTGCGTTTGGAAAGGGATCAATTGAA
AAAAGAGAATGAAGAATTGAAACATTCAATGGCATCTTCTGGACTGAGAT
ATCAGGCTATTAATGATGATGAGGCAAAATGCTTACTGTTAACAGGATTG
AAACCAAAGGTTTTAAAATCTGTAATTGATTATTTGAAGAAGGCTCGTAG
CCCTTCCCAGAAACCACCAAAACATTCAATGGAGGACCAGATTTTGCTTA
CCATCATTAAATTGAAGCATAATCTTGTTTTTGAACTACTGGCTCTGATC
TTTGGTGTTTCACTAACAACGACCATAGACTATTTCTGGAGTTGGATTGA
TATTATGTACATTAATTTGAAACGCCTCATTAAAATGCAAGATAGAGACA
ACATTTTTCGAACTATACCGGCACATTTCAAGTGTAAATTTCCAAGGTTG
ACATCTATAATTGATTGCTTTGAGGTATTTGTTGAAGCCCCTAGCTCCCT
TTTAGCAAGAGCCCAATTTTACTCACAGTACAAGAAACATACAACCATCA
AAGTTTTTATTTCGTGTACACCCCTTGGTGCGATAAATTATGTATCTCAG
TGCTATGGTGGTAGAGCTTCTGATGTACAAGTTGTGAAGGAGTCTGGCTT
CCATACTTCTAAGTTTCACATGCCTGGTGACCAAATATTGGCAGATCGTG
GCTTTACCTTGGTTGAGGAATTTGCTGCCGGAAGCTCTACGGAATTGCTG
ATTCCTGCCTTCACGAAGGGAAAAACTCAACTTTCAGCCAAAGAAGTAGA
AGTTTCACACAAGATAGCATCGGTGAGGATTCACATTGAAAGGGTAATCG
GGCTATTACGTAATAGATACACTATTTTGAAAGGAATAATTCCCTTACGA
CTAATAAAAAGTATTAAAGATGAAAACAGTTCTTCAATAATCGCCAACTG
TGACAAATTGGTTGTTGTATGCTCAGCCCTGACGAATTTGAATGCAAGTA
TAGTATTTGATAAGGATAAACCACTACCAAATACTAGATTGATATCTGAC
ACTTTGTAGCTTGTGACATCCGACCCTGATTACGTACCATCTATTTTTCC
AAAAAAGCCATTGTCTTCAACCGCGTCCAAATCGCCAAAGGCTAAGAAGT
ACAGAACAGTTGCAAGTCCACATCGTCAAAAGCTAGAGAGACATCAAAGG
AAAGTTTTACGCCAGTCAAAAACTAAAAACAAAGAAATGTCACGAAGGCT
ACGACTTCAAAGCCCTGATTTCCAACCGACATCTCCAATCCGAATGCCAG
ATCAAAGTCAAGCCGTTCCAAATATAAACGAGGAAAATGAAGGAATAAGT
GATGACATCAAAATGCCTGATGAAAATGAAGCTAAATGTGATCATTCCAG
CCATAAAAATGATTTACATTCTGAAGAGCTAAAACGAATTTATGAGGAGA
TGAACAATTTGCGTTTGGAAAGGGATCAATTGAAAAAAGAGAATGAAGAA
TTGAAACATTCAATGGCATCTTCTGGACTGAGATATCAGGCTATTAATGA
TGATGAGGCAAAATGCTTACTGTTAACAGGATTGAAACCAAAGGTTTTAA
AATCTGTAATTGATTATTTGAAGAAGGCTCGTAGCCCTTCCCAGAAACCA
CCAAAACATTCAATGGAGGACCAGATTTTGCTTACCATCATTAAATTGAA
GCATAATCTTGTTTTTGAACTACTGGCTCTGATCTTTGGTGTTTCACTAA
CAACGACCATAGACTATTTCTGGAGTTGGATTGATATTATGTACATTAAT
TTGAAACGCCTCATTAAAATGCAAGATAGAGACAACATTTTTCGAACTAT
ACCGGCACATTTCAAGTGTAAATTTCCAAGGTTGACATCTATAATTGATT
GCTTTGAGGTATTTGTTGAAGCCCCTAGCTCCCTTTTAGCAAGAGCCCAA
TTTTACTCACAGTACAAGAAACATACAACCATCAAAGTTTTTATTTCGTG
TACACCCCTTGGTGCGATAAATTATGTATCTCAGTGCTATGGTGGTAGAG
CTTCTGATGTACAAGTTGTGAAGGAGTCTGGCTTCCATACTTCTAAGTTT
CACATGCCTGGTGACCAAATATTGGCAGATCGTGGCTTTACCTTGGTTGA
GGAATTTGCTGCCGGAAGCTCTACGGAATTGCTGATTCCTGCCTTCACGA
AGGGAAAAACTCAACTTTCAGCCAAAGAAGTAGAAGTTTCACACAAGATA
GCATCGGTGAGGATTCACATTGAAAGGGTAATCGGGCTATTACGTAATAG
ATACACTATTTTGAAAGGAATAATTCCCTTACGACTAATAAAAAGTATTA
AAGATGAAAACAGTTCTTCAATAATCGCCAACTGTGACAAATTGGTTGTT
GTATGCTCAGCCCTGACGAATTTGAATGCAAGTATAGTATTTGATAAGGA
TAAACCACTACCAAATACTAGATTGATATCTGACACTTTGTAGCTTGTGA
CATCCGACCCTGATTACGTACCATCTATTTTTCCAAAAAAGCCATTGTCT
TCAACCGCGTCCAAATCGCCAAAGGCTAAGAAGTACAGAACAGTTGCAAG
TCCACATCGTCAAAAGCTAGAGAGACATCAAAGGAAAGTTTTACGCCAGT
CAAAAACTAAAAACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014469XLOC_014469Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025763-proteinTCONS_00025763-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025763-exon-sc0000545-1575043694:220076..220252TCONS_00025763-exon-sc0000545-1575043694:220076..220252Clytia hemisphaericaexon
TCONS_00025763-exon-sc0000545-1575043694:218427..219810TCONS_00025763-exon-sc0000545-1575043694:218427..219810Clytia hemisphaericaexon
TCONS_00025763-exon-sc0000545-1510915933:220076..220252TCONS_00025763-exon-sc0000545-1510915933:220076..220252Clytia hemisphaericaexon
TCONS_00025763-exon-sc0000545-1510915933:218427..219810TCONS_00025763-exon-sc0000545-1510915933:218427..219810Clytia hemisphaericaexon
TCONS_00025763-exon-sc0000545-1491911889:220076..220252TCONS_00025763-exon-sc0000545-1491911889:220076..220252Clytia hemisphaericaexon
TCONS_00025763-exon-sc0000545-1491911889:218427..219810TCONS_00025763-exon-sc0000545-1491911889:218427..219810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000545supercontigsc0000545:218427..220252 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.391655	0.559271	1.43449	1.45287	0.597044	1.01774	0.0665631	0.592109	0.314136	0.243066	0.0149005	0	0	0	0	0	0	0	0	0	0.619822	0.910934	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
IPR027805Transposase_HTH_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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