TCONS_00025761 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025761
Unique NameTCONS_00025761
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025761 ID=TCONS_00025761|Name=TCONS_00025761|organism=Clytia hemisphaerica|type=transcript|length=424bp
TAACAACCAATCCAATGAcgaaaattcttgtaaaatgttcATCTTGACCA
GAAAATACAGTCTGCTGATTTATTAATTGGAACAAcatgaaatttaataa
aaacaagCACAATATATAAAAAGCTGGAAAATGGAAAAGGAAAACCAACc
aataaatgaaaatgattcTACAGCTCCTCCTGCAAAAGTAAAGAAATTGA
TGCCGGTCGACTTATACACTAAACCGAGACTGAAAAAGTGCAAAGAATGC
GGCGTTTCTGCTAAATCAAATAATTCAAAGGTTTGTACCAATGGCCACCC
GTTCACGAGAAAGAAAAAGCCGCCAATCGAGTGCGTGCCAGCGGGCATGA
CCCAGGTCACCGATGTCAGGCATAATTGGGAgacaaatgtaatttttttt
tcataattaaaaTTTCCATTCGAG
Run BLAST on NCBI

transcript from alignment at sc0000545:101321..105170-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025761 ID=TCONS_00025761|Name=TCONS_00025761|organism=Clytia hemisphaerica|type=transcript|length=3850bp|location=Sequence derived from alignment at sc0000545:101321..105170- (Clytia hemisphaerica)
TAACAACCAATCCAATGACGAAAATTCTTGTAAAATGTTCATCTTGACCA
GAAAATACAGTCTGCTGATTTATTAATTGGAACAACATGAAATTTAATAA
AAACAAGGTTCGTTTATTTTCCAAGAAAACTTGCCTCAAGATAGTGATAC
CAACAAACCTTTGAATGGCTTTTGCATTAGCGTGCCTCCACCCTGAAGTT
TTGGACTTTTGGGCCTAAAGCAATCAGGTGGAAACTCAAAATTTTCGACT
TACAGCTGATGGAAATAGGTTAAGATGGGACTTTAGGTGATGCTTACAGG
GATTTTCTACGGTGATATTTTACTTCTGGTGCAGCTAAAAATAANAATAT
ATTTGTTGTCAAGGAGAGATTGACAATACTGTAGCGAGAAAAAGCTGACC
AGCAGAATGTTATATGAAGTTGTCCCATGTTGCCATGCTAGCTTATTAGA
GCAGTTGACAGTATAGATAGAGTCACTTTATACTGATACAATAAATTTAA
CAAAAGAATGTTCTCACTTCACACCCCATCCCATACCATATGTGAGAAGA
TACTGAAGTTAGGTAACTTGCATCAGTGGAGGGAAACTTGCATATCCATC
AAATGACTGACCAATCAANTATCTGGTTATATTAAAAGGTTATTTAGTAG
GGGTTTATCTGGGGCCTATCCATTACAAGTAGGTTGACCCAGAAGATATC
TTTTGCTTTGGTTATTCAAACTCCCAAGGCAGGAAGCAATTCAACCAATG
CTTTTTGTATGTGTAATATTTAGTCATTGAATTGTCTGGTTTATTGTGAT
TGCACATCCATTTTAAAATTGGAAAGTCAGCTTTATATGTGAATTTTTTA
AGTGGTGGGACCTATGAATTATTGTTTTTGGTGTTTTTCACTTTAGAGTG
TTTTTCACTTTAGATAATAGGGTAGCTAGCACTTTGGGGAGAGTTTTTTA
CCATTAATATTTCTTTTTACTGCTTTTTAAGCTATTTGATCTAAACTTTG
TTTTCTAATAATTTTTATGACGCTGACGAGCATGCTGATGGAATTTCAAA
AGTGGACCCTGTCAGATTATGTATTTTTGATAAAATTGGGACCCTGTCGG
AAAGAAAAATTAAAAATTTTCCCATTTTCACTTTCACGCTGAAAATTGGT
NCACTTTGTAGTTTCAGAAAAGACCGTTTATAGTACTCAACATCCCATCT
TATGATTAGAAATTGACAAAGTGCCATTGCAAATAATCTTAAAATGGGAA
CTGTCTTAATTGACCAAATTATTCTATTGGACCCTTTGTAAAATCTGCAA
CCCCCCCCCCCTTTGGGAAAATTTTTAGGAAAAAAACCCAGTAGAAAGGG
GGAAGGAAACTGTTGACTTGTCAAAAGCCTTTGATTGCAGTTAATTTAAA
TCTTCTTTGAAATACATATAGTTATTGGTTGGTATAAGCATAACTCAAGG
GTTAACACAAGTTCTTTAGAAAAATATAATTAAAGTTTTTGTGTTAATAG
TTAACAACCAATCCAATGACGAAANTTTTCACTTTCACGCTGAAAATTGG
CAAAAAGTGGCTGACAGGAGACGAAGAATTGAAAATTTTTCTCCTTTCAA
CCCTGAAAATTGTCTAAAATAACCAAAAGTCCACCTTGTCAGAACACATC
TTGAAAATAAGCAATTTTGGGACCCTGTCAGACATATTGAGAGCTTAAAA
AAGGGGACTCTGACCAGTGGCACATCTCCTTACCCAATTTTGCATGAGTG
CCCCCCCCCCATGATCAATAAATCATGTAGTTTGGTTTTCTTATTAGAAA
TCCATTGAAATGTTACTTTATCATTTATAGCACAATATATAAAAAGCTGG
AAAATGGAAAAGGAAAACCAACCAATAAATGAAAATGATTCTACAGGTAA
GGCATGAGCTCAGTGAGCTTAATTTGTCAATCCTTTTACTTTACAAAAAC
TTTTGCTTTCAGAAAATTTAACGAATCAGATCATTTGCGAAGTTGAGTGT
TTTATTAATTAATGGAATCTAAATTCGCAAATCAGCCAAATTTGTTCAGG
AAGTTGATTCTCGCTAAGTTGGATTCCCTATGCAAAAATGAAAATACCTA
AGGTAAAAGCATCTAATGTGCATTCCCTATATTCACGATTTCGTGAATGT
AGGGAATGTATTCGCGTAAATCGCGAAATTTTCTGGACTCAAAATTCTGT
GACATTTAAACCAGAGATTTGAAAAAGGGATGTAAGAAAGGAGTTTATTC
TCAACTTCAAGAGCTCAAGAGCTAGAATCTCACAATGTCTGTTTGTCTCA
AACAACGACAGCTACAAAAGGTACAATGTTTTGAATAGAAAGCTATTACT
CCCATAAGAGAAATGACAAAAGAAACACTTCATCTTTAATTTTGAGTACC
TTCTGTCGCTTCTGTAAACGCCATTGAGAAAAACATTCAAAAATTGTCGA
ATTTTCCTAAAATTTGGTACACTTGTACTTTGGGTGAATGTCTATGGGAA
TTCATATTTCAGTTTTTTAAATTTTGGTTTTTAGGGTCTGGGACGAGTTT
TTCCTCAAAACGAGGCTAAAAATTTTGAACTGAACTGACTACTCACTTGA
ATCGAAGTAAAAAAATTTATTGTCATGAAATGGATCATAAAAAGACATTG
GGCTATTCCATTACCCTAAACAATGTAATATTGTATTATTGAGGAAGAAA
ATATCTGTCTGCTGAGAGGAAAAAGAAAAACTTTTACCTTTTTTCGGCGC
ACTCTAGAATACTTTGGCAAGAAGATTTTATGAATGCTTAAGAAGTCGTT
GTTATAATTATTTCTCAATCAAAGGTTTCAAAGAAGCATAGTGTTTCATA
GCCTCTTGAACAAAATGAGTTGAAAAGGCGATTCGTATCTCCATTTTTCA
AATTTCTGAAAGTATCCACTTCTTTTGTCTACGCACATTTTTTTTTCAGT
GATTCTCAATAAATTTTATATGAGACATTAACGATGAAAGTTCACCTCCT
TTAATTCATTTCAATGTTTTAAATTGACGGATTGACGCTACTCGAAACAT
GACTGACTTACGTGACTATTGGTATGACTGTAGACTGACAATTACACGGT
TACACTAAAACACTATTTGAAACATGACAACATCTGGAAATCAGTAAGTT
TTATTCCGTTATAGTTCAGGAGTAAAAACTGTCTTCAATCTGTATTGTGT
TTGGAATATTCAACATCGAGACAGAATGCTCGCAAAAATTGATTGTGTAC
GAGAAGAAAAATAAAGAAGACGAGAAATTTTTCTTCGCACTCTTTCACCT
TTTTGTTACGCTGTATCAGGGGAAGAAAGATACATTTACTGATAACTTTG
GAGAAAAAAATCCTTCTAGTCTATTTTTTCATCTAAGGAGTATCAAAGAA
ATCTTTTTACTGTATGATTCCTGTGATTGATATTCCTTTCTTCTTTTTGT
TTCATTAGCTCCTCCTGCAAAAGTAAAGAAATTGATGCCGGTCGACTTAT
ACACTAAACCGAGACTGAAAGTATGTTTATTAAATATTCGTTTAATTCAT
TGAGCAGACATTTTAACTTCCTTATTCAACTTGTTTTCGTATTACCTTGT
AAGTATTTTTAATGTTTCTTTTTATTTAAAAAATAGTACTATTATTCTTC
TTTTACTTTAGAAGTGCAAAGAATGCGGCGTTTCTGCTAAATCAAATAAT
TCAAAGGTTTGTACCAATGGCCACCCGTTCACGAGAAAGAAAAAGCCGCC
AATCGAGTGCGTGCCAGCGGGCATGACCCAGGTCACCGATGTCAGGCATA
ATTGGGAGACAAATGTAATTTTTTTTTCATAATTAAAATTTCCATTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014467XLOC_014467Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025761-exon-sc0000545-1575043694:105064..105170TCONS_00025761-exon-sc0000545-1575043694:105064..105170Clytia hemisphaericaexon
TCONS_00025761-exon-sc0000545-1575043694:103275..103340TCONS_00025761-exon-sc0000545-1575043694:103275..103340Clytia hemisphaericaexon
TCONS_00025761-exon-sc0000545-1575043694:101651..101712TCONS_00025761-exon-sc0000545-1575043694:101651..101712Clytia hemisphaericaexon
TCONS_00025761-exon-sc0000545-1575043694:101321..101509TCONS_00025761-exon-sc0000545-1575043694:101321..101509Clytia hemisphaericaexon
TCONS_00025761-exon-sc0000545-1510915933:105064..105170TCONS_00025761-exon-sc0000545-1510915933:105064..105170Clytia hemisphaericaexon
TCONS_00025761-exon-sc0000545-1510915933:103275..103340TCONS_00025761-exon-sc0000545-1510915933:103275..103340Clytia hemisphaericaexon
TCONS_00025761-exon-sc0000545-1510915933:101651..101712TCONS_00025761-exon-sc0000545-1510915933:101651..101712Clytia hemisphaericaexon
TCONS_00025761-exon-sc0000545-1510915933:101321..101509TCONS_00025761-exon-sc0000545-1510915933:101321..101509Clytia hemisphaericaexon
TCONS_00025761-exon-sc0000545-1491911889:105064..105170TCONS_00025761-exon-sc0000545-1491911889:105064..105170Clytia hemisphaericaexon
TCONS_00025761-exon-sc0000545-1491911889:103275..103340TCONS_00025761-exon-sc0000545-1491911889:103275..103340Clytia hemisphaericaexon
TCONS_00025761-exon-sc0000545-1491911889:101651..101712TCONS_00025761-exon-sc0000545-1491911889:101651..101712Clytia hemisphaericaexon
TCONS_00025761-exon-sc0000545-1491911889:101321..101509TCONS_00025761-exon-sc0000545-1491911889:101321..101509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000545supercontigsc0000545:101321..105170 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.971431	0.889409	0	1.37187	4.20333	5.13968	3.33329	2.50076	2.21098	2.25077	0.843297	0.705566	0	0	0	0	0.159544	0	0.378401	0.172011	0.781776	0.874569	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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