TCONS_00025759 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025759
Unique NameTCONS_00025759
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025759 ID=TCONS_00025759|Name=TCONS_00025759|organism=Clytia hemisphaerica|type=transcript|length=1267bp
tttagatatcaaaaaaataatttatataacATGTCACAAAAAGGAGGCTA
CAAGTTAAACTTTGTTCATCTCCAGCTAGACAATACAATTTGTTCCATCT
GTCGATTGGTTTTATGTAATCCAATGCAAGCTGAAAGGTGTGGACATCGC
TACTGCAAAAGTTGTCTGTATGACCTGCCAAAGAGAAACGGATTCCATAT
ATGCCCTCAAGATGGCTCTGAAATGAAGTTATTTCAAGATAATGCTAAAC
AAATGGAAATTTTAGAGTTACTTGTAAAATGTCCGAACAATCAATCTGGA
TCGTGTAATTGGATCAAAGAACTACGTCATTTAAGGGTTCATCTAGAAGT
CGAATGTCTTTTTGAATTTGTGAAATGCACCAACTTCGGTTGTACTGCCA
AGGTGGAGaggagatttttgaaaaaccacAAGTTGAGTGATTGCAAATAC
CGTCTTGTCTGCTGTCAATATTGCTCACATCAACACGCACAATACACGGA
AAAGAGTCATCTAAAAGTCTGCACTGAAGCCCCAGTAAGTTGTCAAGATT
GTTACGAAGACGCTATACCAAAATCAAGGATCGGCATTCACCGTTCAAAG
GAATGCACCAGACGAAAAATCTTTGAAGCGATGGAAATTCAACTCAAAGA
CCAAACGGCAGAAATGAAGAAATTACAGGATATAATTCGTCAACAAAAAG
TTGAGATCGATCAACATAAAACTGAGAATCAAATGTTGAAAAAGAAAGTC
TATCatcaagaacaaactatgtccACTCTAAAACGTGACCAGGAGGACTT
GTGCGGCAAATTCAATCGGATATGTAATGTCATTCGAAAATGAAACAGGC
TGATGGTATCATTTGATGCTTATGGAGATTTGattctttgtaactttttc
aTCGGACAAATAACAGATCCGATTATTTCTGATTATTGACTATAACAACA
AAGCCAGCACTAATTCGGGCCTGTAACTCATCAGCGATGAACAGGACGTA
CAATAGTTTTGTTGATGTACATATATATTATTTCATATGTATTTTTTACC
GACGTGTTGATTTTAGTTCagtatgaatatttttttaattataaatgATA
AAACAGAAAACTGTAAATAAATATTTAGATATTCTAGTCCataataaatc
ttttttattttctgtcaAGTGTTTTACAACACATGTACAATAGCATTTGA
GGTATTTTTTCATTGTGAATTTTACGAGATTTTAGCAAAAAGGCGACAAT
TAGAGGGACGATTTATT
Run BLAST on NCBI

protein sequence of TCONS_00025759-protein

>TCONS_00025759-protein ID=TCONS_00025759-protein|Name=TCONS_00025759-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
FRYQKNNLYNMSQKGGYKLNFVHLQLDNTICSICRLVLCNPMQAERCGHR
YCKSCLYDLPKRNGFHICPQDGSEMKLFQDNAKQMEILELLVKCPNNQSG
SCNWIKELRHLRVHLEVECLFEFVKCTNFGCTAKVERRFLKNHKLSDCKY
RLVCCQYCSHQHAQYTEKSHLKVCTEAPVSCQDCYEDAIPKSRIGIHRSK
ECTRRKIFEAMEIQLKDQTAEMKKLQDIIRQQKVEIDQHKTENQMLKKKV
YHQEQTMSTLKRDQEDLCGKFNRICNVIRK
Run BLAST on NCBI

transcript from alignment at sc0000545:200684..203916+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025759 ID=TCONS_00025759|Name=TCONS_00025759|organism=Clytia hemisphaerica|type=transcript|length=3233bp|location=Sequence derived from alignment at sc0000545:200684..203916+ (Clytia hemisphaerica)
tttagatatcaaaaaaataatttatataacATGTCACAAAAAGGAGGCTA
CAAGTTAAACTTTGTTCATCTCCAGCTAGACAATACAATTTGTTCCATCT
GTCGATTGGTTTTATGTAATCCAATGCAAGCTGAAAGGTGTGGACATCGC
TACTGCAAAAGTTGTCTGTATGACCTGCCAAAGAGGTGTGTATGAAAGCT
ATTAAACAAAGCTTGTTCTTTCTACAAATCactatgaatatttttgaatt
gttaTGATTAAATTTACTTTGGCTCTCAACCAGGGAcctatgttcttatt
ttttatgattttaggcaaagtcttgaaaaagtatTGAttgaattgtaaaa
tttattattttacttcGATTTCTTGCATTTTTAGAAACGGATTCCATATA
TGCCCTCAAGATGGCTCTGAAATGAAGGTAAATCAATAATATTAACAGTA
GCTAGCAGGCTTGGGAGAAGGTGCAAAATTATGTTTGATTGTCTGAATGA
TTACTCATTTTGTGAGTTGTTCCCCATTTGCCCAATCATCAACAGTGGTG
GTAATAATGCCCGAGGGGCACTAGTTTCAAAAACGACCGTATGTGCAgtc
caaatttagaaatttgaatccggatccttacagtgcagagaaaatttagt
cGAATTTAAGTTAATTTGGGCGAAAGATCAACCCTTATACGGTCTTCATT
TTTCTCACCTTTCTTTCGAACCTTAGAGTGCAGCTTTCTTTCATCTTTGt
tgatttcgacccttacagcgCACTTTGGGAAGCCTGAAAAAACGCACCCT
TAAGGACCGCTTACCTGGAATAATTTATTTCACACCGAGTGAGCCTACGA
CTTCTCGCCTGTCGTGCAATGGTCGTATACCTTCTCAATTTAAGTTTTTT
CATTTACCATTTCAGTTATTTCAAGATAATGCTAAACAAATGGAAATTTT
AGAGTTACTTGTAAAATGTCCGAACAATCAATCTGGATCGTGTAATTGGA
TCAAAGAACTACGTCATTTAAGGGTATGGTGTCCATTTGGTTCGTTtctt
tgataaattttcaatattataATGAAGTAATTGATGGGAGAttattaaaa
actttaaaagaatGTCAGGAAACAAACACACGGCCTAATCAAAcattaaa
gatatttcttcAGTTCAGCCGAGTCTTCTTAGTTCGAATCTTTATTATTC
AAAGCTTTAAAACTTAATTCGAAGTAAAATATTGCTACCCTCAATTGGAA
GATCGTTTAAAAAACTCCGACCCGAGTTTTTTATAACTCGAAGACAATTC
TTGAATCCTGTTGAAGATCGAATTGGAGAGAGACAACTGTCTTTTCAAGT
TTGNTTCTTGAATCCTGTTGAAGATCGAATTGGAGAGAGACAACTGTATT
TTCAAGTTTGTTCTTTAAGCCTTATTCTTACCGGAAGATATTTTCCAGGT
TCATCTAGAAGTCGAATGTCTTTTTGAATTTGTGAAATGCACCAACTTCG
GTTGTACTGCCAAGGTGGAGaggagatttttgaaaaaccacAAGTTGAGT
GATTGCAAATACCGTCTTGTCTGCTGTCAATATTGCTCACATCAACACGC
ACAATACACGGAAAAGGTTGATATAAATTTCTTTAAGGTTCAATTTGGTT
CATAAAATGTATTTTGCACCCATGTAGGGTAGTACCACGTCTAAATTCAC
CCTATTGGTATTGGCATATCATCTCTTGATACAAAAGGTTCGTAGAAGAA
AGATCGTTTTTCGAAAAACAACACTTTAAAACACTCAAATTAACTTATAT
AGCCTTAATTAAACCTTAAAATTCACCTATTACTTCGAGggtaaattttg
gttttatctTTTATCCAAATAAACTTTTTACCCGGAATGATTTAAACATT
ACTTTCAAAATCCTTTCATTTAGAGTCATCTAAAAGTCTGCACTGAAGCC
CCAGTAAGTTGTCAAGATTGTTACGAAGACGCTATACCAAAATCAAGGGT
GAGAAACAGCCTTAATATTTCTACAATGCCGTCTAaacgcgcgctgcgat
cgcactttatctatcaaagcttccacgctattggtcaaaagaaaaatgaa
gcaattccattggcgcgatctgacgtaacggttgaaaaaagtagaaatgt
attcaacttttttttccagcgcgcgctacatttttatgacgtaatctttt
ttccaacaaaaagaATATTGAAGCCAAATCGCAGCGTGCGTAAGTTGAGA
CCGGCCTTAACAAAAGACTTTTAGATGTAGATGTCGTACTAAATATGCCT
TCAAGGAAAATTTTAATATGAACAAACAAAGGTTTAGTGTCTAGAGCACT
ATTNATATTTAATATGCCTTCAAGGAAAATTTTAATATGAACAAACAAAG
GTTTAGTGTCTAAAGCACTATTtacgaagaaaaaatattggaagCGGCTT
TTTAACACGAGTAGAGCAGGATATGGTGTTTGGAATGTTTGGGACACAGC
CTTAGTACAAGCAAAactatttcgaaaaaataatcctCATTCTAGATCGG
CATTCACCGTTCAAAGGAATGCACCAGACGAAAAATCTTTGAAGCGATGG
AAATTCAACTCAAAGACCAAACGGCAGAAATGAAGAAATTACAGGATATA
ATTCGTCAACAAAAAGTTGAGATCGATCAACATAAAACTGAGAATCAAAT
GTTGAAAAAGAAAGTCTATCatcaagaacaaactatgtccACTCTAAAAC
GTGACCAGGAGGACTTGTGCGGCAAATTCAATCGGATATGTAATGTCATT
CGAAAATGAAACAGGCTGATGGTATCATTTGATGCTTATGGAGATTTGat
tctttgtaactttttcaTCGGACAAATAACAGATCCGATTATTTCTGATT
ATTGACTATAACAACAAAGCCAGCACTAATTCGGGCCTGTAACTCATCAG
CGATGAACAGGACGTACAATAGTTTTGTTGATGTACATATATATTATTTC
ATATGTATTTTTTACCGACGTGTTGATTTTAGTTCagtatgaatattttt
ttaattataaatgATAAAACAGAAAACTGTAAATAAATATTTAGATATTC
TAGTCCataataaatcttttttattttctgtcaAGTGTTTTACAACACAT
GTACAATAGCATTTGAGGTATTTTTTCATTGTGAATTTTACGAGATTTTA
GCAAAAAGGCGACAATTAGAGGGACGATTTATT

Coding sequence (CDS) from alignment at sc0000545:200684..203916+

>TCONS_00025759 ID=TCONS_00025759|Name=TCONS_00025759|organism=Clytia hemisphaerica|type=CDS|length=5058bp|location=Sequence derived from alignment at sc0000545:200684..203916+ (Clytia hemisphaerica)
tttagatatcaaaaaaataatttatataacATGTCACAAAAAGGAGGCTA
CAAGTTAAACTTTGTTCATCTCCAGCTAGACAATACAATTTGTTCCATCT
GTCGATTGGTTTTATGTAATCCAATGCAAGCTGAAAGGTGTGGACATCGC
TACTGCAAAAGTTGTCTGTATGACCTGCCAAAGAGAAACGGATTCCATAT
ATGCCCTCAAGATGGCTCTGAAATGAAGTTATTTCAAGATAATGCTAAAC
AAATGGAAATTTTAGAGTTACTTGTAAAATGTCCGAACAATCAATCTGGA
TCGTGTAATTGGATCAAAGAACTACGTCATTTAAGGGTTCATCTAGAAGT
CGAATGTCTTTTTGAATTTGTGAAATGCACCAACTTCGGTTGTACTGCCA
AGGTGGAGaggagatttttgaaaaaccacAAGTTGAGTGATTGCAAATAC
CGTCTTGTCTGCTGTCAATATTGCTCACATCAACACGCACAATACACGGA
AAAGAGTCATCTAAAAGTCTGCACTGAAGCCCCAGTAAGTTGTCAAGATT
GTTACGAAGACGCTATACCAAAATCAAGGATCGGCATTCACCGTTCAAAG
GAATGCACCAGACGAAAAATCTTTGAAGCGATGGAAATTCAACTCAAAGA
CCAAACGGCAGAAATGAAGAAATTACAGGATATAATTCGTCAACAAAAAG
TTGAGATCGATCAACATAAAACTGAGAATCAAATGTTGAAAAAGAAAGTC
TATCatcaagaacaaactatgtccACTCTAAAACGTGACCAGGAGGACTT
GTGCGGCAAATTCAATCGGATATGTAATGTCATTCGAAAATGAtttagat
atcaaaaaaataatttatataacATGTCACAAAAAGGAGGCTACAAGTTA
AACTTTGTTCATCTCCAGCTAGACAATACAATTTGTTCCATCTGTCGATT
GGTTTTATGTAATCCAATGCAAGCTGAAAGGTGTGGACATCGCTACTGCA
AAAGTTGTCTGTATGACCTGCCAAAGAGAAACGGATTCCATATATGCCCT
CAAGATGGCTCTGAAATGAAGTTATTTCAAGATAATGCTAAACAAATGGA
AATTTTAGAGTTACTTGTAAAATGTCCGAACAATCAATCTGGATCGTGTA
ATTGGATCAAAGAACTACGTCATTTAAGGGTTCATCTAGAAGTCGAATGT
CTTTTTGAATTTGTGAAATGCACCAACTTCGGTTGTACTGCCAAGGTGGA
GaggagatttttgaaaaaccacAAGTTGAGTGATTGCAAATACCGTCTTG
TCTGCTGTCAATATTGCTCACATCAACACGCACAATACACGGAAAAGAGT
CATCTAAAAGTCTGCACTGAAGCCCCAGTAAGTTGTCAAGATTGTTACGA
AGACGCTATACCAAAATCAAGGATCGGCATTCACCGTTCAAAGGAATGCA
CCAGACGAAAAATCTTTGAAGCGATGGAAATTCAACTCAAAGACCAAACG
GCAGAAATGAAGAAATTACAGGATATAATTCGTCAACAAAAAGTTGAGAT
CGATCAACATAAAACTGAGAATCAAATGTTGAAAAAGAAAGTCTATCatc
aagaacaaactatgtccACTCTAAAACGTGACCAGGAGGACTTGTGCGGC
AAATTCAATCGGATATGTAATGTCATTCGAAAATGAtttagatatcaaaa
aaataatttatataacATGTCACAAAAAGGAGGCTACAAGTTAAACTTTG
TTCATCTCCAGCTAGACAATACAATTTGTTCCATCTGTCGATTGGTTTTA
TGTAATCCAATGCAAGCTGAAAGGTGTGGACATCGCTACTGCAAAAGTTG
TCTGTATGACCTGCCAAAGAGAAACGGATTCCATATATGCCCTCAAGATG
GCTCTGAAATGAAGTTATTTCAAGATAATGCTAAACAAATGGAAATTTTA
GAGTTACTTGTAAAATGTCCGAACAATCAATCTGGATCGTGTAATTGGAT
CAAAGAACTACGTCATTTAAGGGTTCATCTAGAAGTCGAATGTCTTTTTG
AATTTGTGAAATGCACCAACTTCGGTTGTACTGCCAAGGTGGAGaggaga
tttttgaaaaaccacAAGTTGAGTGATTGCAAATACCGTCTTGTCTGCTG
TCAATATTGCTCACATCAACACGCACAATACACGGAAAAGAGTCATCTAA
AAGTCTGCACTGAAGCCCCAGTAAGTTGTCAAGATTGTTACGAAGACGCT
ATACCAAAATCAAGGATCGGCATTCACCGTTCAAAGGAATGCACCAGACG
AAAAATCTTTGAAGCGATGGAAATTCAACTCAAAGACCAAACGGCAGAAA
TGAAGAAATTACAGGATATAATTCGTCAACAAAAAGTTGAGATCGATCAA
CATAAAACTGAGAATCAAATGTTGAAAAAGAAAGTCTATCatcaagaaca
aactatgtccACTCTAAAACGTGACCAGGAGGACTTGTGCGGCAAATTCA
ATCGGATATGTAATGTCATTCGAAAATGAtttagatatcaaaaaaataat
ttatataacATGTCACAAAAAGGAGGCTACAAGTTAAACTTTGTTCATCT
CCAGCTAGACAATACAATTTGTTCCATCTGTCGATTGGTTTTATGTAATC
CAATGCAAGCTGAAAGGTGTGGACATCGCTACTGCAAAAGTTGTCTGTAT
GACCTGCCAAAGAGAAACGGATTCCATATATGCCCTCAAGATGGCTCTGA
AATGAAGTTATTTCAAGATAATGCTAAACAAATGGAAATTTTAGAGTTAC
TTGTAAAATGTCCGAACAATCAATCTGGATCGTGTAATTGGATCAAAGAA
CTACGTCATTTAAGGGTTCATCTAGAAGTCGAATGTCTTTTTGAATTTGT
GAAATGCACCAACTTCGGTTGTACTGCCAAGGTGGAGaggagatttttga
aaaaccacAAGTTGAGTGATTGCAAATACCGTCTTGTCTGCTGTCAATAT
TGCTCACATCAACACGCACAATACACGGAAAAGAGTCATCTAAAAGTCTG
CACTGAAGCCCCAGTAAGTTGTCAAGATTGTTACGAAGACGCTATACCAA
AATCAAGGATCGGCATTCACCGTTCAAAGGAATGCACCAGACGAAAAATC
TTTGAAGCGATGGAAATTCAACTCAAAGACCAAACGGCAGAAATGAAGAA
ATTACAGGATATAATTCGTCAACAAAAAGTTGAGATCGATCAACATAAAA
CTGAGAATCAAATGTTGAAAAAGAAAGTCTATCatcaagaacaaactatg
tccACTCTAAAACGTGACCAGGAGGACTTGTGCGGCAAATTCAATCGGAT
ATGTAATGTCATTCGAAAATGAtttagatatcaaaaaaataatttatata
acATGTCACAAAAAGGAGGCTACAAGTTAAACTTTGTTCATCTCCAGCTA
GACAATACAATTTGTTCCATCTGTCGATTGGTTTTATGTAATCCAATGCA
AGCTGAAAGGTGTGGACATCGCTACTGCAAAAGTTGTCTGTATGACCTGC
CAAAGAGAAACGGATTCCATATATGCCCTCAAGATGGCTCTGAAATGAAG
TTATTTCAAGATAATGCTAAACAAATGGAAATTTTAGAGTTACTTGTAAA
ATGTCCGAACAATCAATCTGGATCGTGTAATTGGATCAAAGAACTACGTC
ATTTAAGGGTTCATCTAGAAGTCGAATGTCTTTTTGAATTTGTGAAATGC
ACCAACTTCGGTTGTACTGCCAAGGTGGAGaggagatttttgaaaaacca
cAAGTTGAGTGATTGCAAATACCGTCTTGTCTGCTGTCAATATTGCTCAC
ATCAACACGCACAATACACGGAAAAGAGTCATCTAAAAGTCTGCACTGAA
GCCCCAGTAAGTTGTCAAGATTGTTACGAAGACGCTATACCAAAATCAAG
GATCGGCATTCACCGTTCAAAGGAATGCACCAGACGAAAAATCTTTGAAG
CGATGGAAATTCAACTCAAAGACCAAACGGCAGAAATGAAGAAATTACAG
GATATAATTCGTCAACAAAAAGTTGAGATCGATCAACATAAAACTGAGAA
TCAAATGTTGAAAAAGAAAGTCTATCatcaagaacaaactatgtccACTC
TAAAACGTGACCAGGAGGACTTGTGCGGCAAATTCAATCGGATATGTAAT
GTCATTCGAAAATGAtttagatatcaaaaaaataatttatataacATGTC
ACAAAAAGGAGGCTACAAGTTAAACTTTGTTCATCTCCAGCTAGACAATA
CAATTTGTTCCATCTGTCGATTGGTTTTATGTAATCCAATGCAAGCTGAA
AGGTGTGGACATCGCTACTGCAAAAGTTGTCTGTATGACCTGCCAAAGAG
AAACGGATTCCATATATGCCCTCAAGATGGCTCTGAAATGAAGTTATTTC
AAGATAATGCTAAACAAATGGAAATTTTAGAGTTACTTGTAAAATGTCCG
AACAATCAATCTGGATCGTGTAATTGGATCAAAGAACTACGTCATTTAAG
GGTTCATCTAGAAGTCGAATGTCTTTTTGAATTTGTGAAATGCACCAACT
TCGGTTGTACTGCCAAGGTGGAGaggagatttttgaaaaaccacAAGTTG
AGTGATTGCAAATACCGTCTTGTCTGCTGTCAATATTGCTCACATCAACA
CGCACAATACACGGAAAAGAGTCATCTAAAAGTCTGCACTGAAGCCCCAG
TAAGTTGTCAAGATTGTTACGAAGACGCTATACCAAAATCAAGGATCGGC
ATTCACCGTTCAAAGGAATGCACCAGACGAAAAATCTTTGAAGCGATGGA
AATTCAACTCAAAGACCAAACGGCAGAAATGAAGAAATTACAGGATATAA
TTCGTCAACAAAAAGTTGAGATCGATCAACATAAAACTGAGAATCAAATG
TTGAAAAAGAAAGTCTATCatcaagaacaaactatgtccACTCTAAAACG
TGACCAGGAGGACTTGTGCGGCAAATTCAATCGGATATGTAATGTCATTC
GAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014466XLOC_014466Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025759-proteinTCONS_00025759-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025759-exon-sc0000545-1491911889:200684..200868TCONS_00025759-exon-sc0000545-1491911889:200684..200868Clytia hemisphaericaexon
TCONS_00025759-exon-sc0000545-1510915933:200684..200868TCONS_00025759-exon-sc0000545-1510915933:200684..200868Clytia hemisphaericaexon
TCONS_00025759-exon-sc0000545-1575043694:200684..200868TCONS_00025759-exon-sc0000545-1575043694:200684..200868Clytia hemisphaericaexon
TCONS_00025759-exon-sc0000545-1491911889:201068..201110TCONS_00025759-exon-sc0000545-1491911889:201068..201110Clytia hemisphaericaexon
TCONS_00025759-exon-sc0000545-1510915933:201068..201110TCONS_00025759-exon-sc0000545-1510915933:201068..201110Clytia hemisphaericaexon
TCONS_00025759-exon-sc0000545-1575043694:201068..201110TCONS_00025759-exon-sc0000545-1575043694:201068..201110Clytia hemisphaericaexon
TCONS_00025759-exon-sc0000545-1491911889:201599..201706TCONS_00025759-exon-sc0000545-1491911889:201599..201706Clytia hemisphaericaexon
TCONS_00025759-exon-sc0000545-1510915933:201599..201706TCONS_00025759-exon-sc0000545-1510915933:201599..201706Clytia hemisphaericaexon
TCONS_00025759-exon-sc0000545-1575043694:201599..201706TCONS_00025759-exon-sc0000545-1575043694:201599..201706Clytia hemisphaericaexon
TCONS_00025759-exon-sc0000545-1491911889:202132..202299TCONS_00025759-exon-sc0000545-1491911889:202132..202299Clytia hemisphaericaexon
TCONS_00025759-exon-sc0000545-1510915933:202132..202299TCONS_00025759-exon-sc0000545-1510915933:202132..202299Clytia hemisphaericaexon
TCONS_00025759-exon-sc0000545-1575043694:202132..202299TCONS_00025759-exon-sc0000545-1575043694:202132..202299Clytia hemisphaericaexon
TCONS_00025759-exon-sc0000545-1491911889:202607..202681TCONS_00025759-exon-sc0000545-1491911889:202607..202681Clytia hemisphaericaexon
TCONS_00025759-exon-sc0000545-1510915933:202607..202681TCONS_00025759-exon-sc0000545-1510915933:202607..202681Clytia hemisphaericaexon
TCONS_00025759-exon-sc0000545-1575043694:202607..202681TCONS_00025759-exon-sc0000545-1575043694:202607..202681Clytia hemisphaericaexon
TCONS_00025759-exon-sc0000545-1491911889:203229..203916TCONS_00025759-exon-sc0000545-1491911889:203229..203916Clytia hemisphaericaexon
TCONS_00025759-exon-sc0000545-1510915933:203229..203916TCONS_00025759-exon-sc0000545-1510915933:203229..203916Clytia hemisphaericaexon
TCONS_00025759-exon-sc0000545-1575043694:203229..203916TCONS_00025759-exon-sc0000545-1575043694:203229..203916Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000545supercontigsc0000545:200684..203916 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.79553	4.93352	20.0469	20.0185	1.49892	1.5134	1.59513	1.21663	2.35442	1.68539	1.83514	1.82111	0.854531	1.22246	1.50719	1.99261	2.2202	2.80886	0.451906	1.13983	2.24116	1.35958	8.22266	7.54218	3.3236	3.03365	1.73217	1.18765	3.80438	3.77109
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR017907Znf_RING_CS
IPR001841Znf_RING
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00025759 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.235e-20
Identity = 69/194 (35.57%), Postives = 96/194 (49.48%), Query Frame = 1 
Query:   31 MSQKGGYKLNFVHLQLDNTICSICRLVLCNPMQAERCGHRYCKSCLYDLPKRNGFH--ICPQDGSEMKLFQDNAKQMEILELLVKCPNNQSGSCNWIKELRHLRVHLEVECLFEFVKCTNFGCTAKVERRFLKNHKLSDCKYRLVCCQYCSHQHAQYTEKSHLKV-CTEAPVSC-QDCYEDAIPKSRIGIHRSK 600
            + ++GGYK  FV    D   C  C LVLC+P Q E CGHR+C+SC+  L   +      C +   + K+F+DN  + EIL L + C  N+S  C     L HL VHL+ +C FE + C    C  KV R+ L++H    CKYR   C +C  Q      + H    C    VSC   C    + +S +  H S+
Sbjct:   33 VPEQGGYKEKFVKTVEDKYKCEKCHLVLCSPKQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKDKVFKDNCCKREILALQIYC-RNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHEDTDCPCVVVSCPHKCSVQTLLRSELSAHLSE 224
The following BLAST results are available for this feature:
BLAST of TCONS_00025759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF31.235e-2035.57TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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