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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025751 ID=TCONS_00025751|Name=TCONS_00025751|organism=Clytia hemisphaerica|type=transcript|length=839bp
acaagATTTTATAAGTTTAAAGAATTTAAATAATAATGAGTTGTGGAAGA
CAAGGCTGCAGTTGGCTCACTTGCACACTTTGCAGAACAAGTCATCAGTC
TGCACAAACATTACAAAAAGCTTCACGTAGAAGTATTGAATGGCCAACAC
AAATTCATCAaccacccaatgaacaaGATGGTAGTACAAACATTACAATT
GATGATGCCTTTGATGATGTTCTACAATACATGACCACAACTGCACGGCA
ATGCAAACGTTATCATAGATCAACTTGCAGACAGTTCACAAGTGACTCTG
ACCTTCTGCATCTAAAAAGGTACCATCAAAATCACAAAACGGCTAATTAC
AAATCCAATCCGCTGCAAAAAACAGAAGAGGTAAATGTAGAAGTAGCTCC
AGGAACATATGCTATTAGTGCAGGTGCTTGGGGCTCTGATCGCCAGCATA
CTCATGTTATCCATATTAAAGACAACCAAACTGTAGACCTCAATTTTGGA
ATGTGAAGACAATCGCATAccgtactattttgttttgtaaaatatgtaaa
tattttttattattattattgcagtcttttccacttttttatATCGCCTC
AATTCTCAAATTTTGGATCAGAGTATAACTGTATgcttaaatattttgta
attaGGAAATTATTATGAATTTATTAATAGCAGAATACAATTTTGTACCT
TTTTATTTGTTGATTTGAAGGATAAGGGTAGGATCGGGGAGACTTAAGAA
AGGCTCTTAATGCCTCATTATAGTAATTACCTTTCATTATTATCTTCGTC
AATTTTGACACATTGTATTTAGATTCATTTAAATTCATA Run BLAST on NCBI transcript from alignment at sc0000545:144939..149377+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025751 ID=TCONS_00025751|Name=TCONS_00025751|organism=Clytia hemisphaerica|type=transcript|length=4439bp|location=Sequence derived from alignment at sc0000545:144939..149377+ (Clytia hemisphaerica)
acaagATTTTATAAGTTTAAAGAATTTAAATAATAATGAGTTGTGGAAGA
CAAGGCTGCAGTTGGCTCACTTGCACACTTTGCAGAACAAGTCATCAGTC
TGCACAAACATTACAAAAAGCTTCACGTAGAAGTATTGAATGGCCAACAC
AAATTCATCAaccacccaatgaacaagtaaACAAAATTAAATTGTTATTT
ACACCTTATAGTTATTCAAACAATATTTTTCTGTCAATTTATGACTTTTT
ATTAAGGGAATTGTCTGAGAACATTTGTGCCTGAGATAATTGTTCCTTCG
GGCAAATGTCCTGGAGCACTTATTCTGCCACAGTcaaatttgtaataaaa
acaTTTGGATGCTGATTTAATTTCATCATAACAGATGAGAAACACACACA
TGGAGAGAAGTTAAAGTATTACAAAAAACCCTGATTTTATCAAGTCTTTT
TCTCTAGGATGGTAGTACAAACATTACAATTGATGATGCCTTTGATGATG
TTCTACAATACATGACCACAACTGCACGGCAATGCAAAGTAACTTTATAA
TATGATGTTTTAGCCCCTCCCcccaaattatttttcattgatttgaaaat
aaattgtatatttttttgggAGTTTTGAAAGTTATTATGTAGTCTATTTG
TGACTCCTCAAGCAATTTTAACTGCCTGACCAATCTAACTGGTTTTGTGG
TACAGTATAAGGAGTGGTCTTAGTAGcaatcaaatttttgctttagatCA
GCCTTCAGATCTTCTAGAAAATTAGATTTCAAACTATTCTAGTTGCTTGT
AAATCTTCATGGCCACTCATTAGACCAGTCCTGGTTTCTCATTAGGCTAG
TCCAGGTTATTCGTTAGATCCGCCATGGTCTTTCTTTAGTGTTTGTGTGT
AACAATTAcatccaaaaaaaagttttgaaaggatAGAGACCGATATGGGA
CAGCTCTAATCCTTTAAATACATGCTTTGAAATGGCTGCTATTAGGGAGT
CAGATTTCTTACTTATTTTTATGATAAAACAAGACAGTAATTGGAAAAGC
TATTATGCCAAATAATTCATTTTCACTTTCTCCATGCTTATATGTAAATT
TGTCTTTATATCTCAGCGTTATCATAGATCAACTTGCAGACAGTTCACAA
GTGACTCTGACCTTCTGCATCTAAAAAGGTACCATCAAAATCACAAAACG
GCTAATTACAAATCCAATCCGGTAAGTTATCATACAGGCTCTNTTCTCTA
GGATGGTAGTACAAACATTACAATTGATGATGCCTTTGATGATGTTCTAC
AATACATGACCACAACTGCACGGCAATGCAAAGTAACTTTATAATATGAT
GTTTTAGCCCCTCCCcccaaattatttttcattgatttgaaaataaattg
tatattttttttgggAGTTTTGAAAGTTATTATGTAGTCTATTTGTGACT
CCTCAAGCAATTTTAACTGCCTGACCAATCTAANaggagagtgcacttta
ttatcgtattaccttatatggaaactaattactctccatgaataagatag
cctacctcctgtatccgaccctgtcATATAATGCATACAAAGTCAAAATC
GTTTATCCTCATTCTTTCcctattttaatttttagtacTTATACTAGCCG
TCACCtagcgtcgcacccgccgaggagtagataagcttAACGTatcataa
gccctttggatggtggggagAGTATTAAGATTTGATCTTTAAGCCCAATG
AACTAAAAGTTACCACTTTTTTAAAtggttgaaaactaaaaatattgcaa
atttaatGTTTTACTGTAGGGCCAAAATGATGTCATCGAATGAgcaataa
acttttcacttgacttaaaatatttcttcattgaccaaatagattctctt
gatgatttctGATACAATGAGGGGTTAATCATTGTTTTAATCCTTGTCAA
ACTAGAGATatcacttttttttgttttgatgacgtcatcaactgaaaacg
cctaaaaattcagccaaatttgaaagtcacACTTAAGCCTCATAACCCCT
CCCATCTTATTTTCCATAGagttctcgatccaatgaggggtcaacgacct
cccaactccttttcaattGAAGATATTCCCAAATCAACGGTCACTTcgcg
aattttggaatttttgcagTCAATGGGTAGCTTATgcccccaagggtccc
aaaaaaacaaaaaacgtcaacTATTTCCAAGAGAAAGTGAgtttttaaat
ttgcaaaagattgACACTTCAACGACTTCTCCCCcaaattttcacactct
tcccctggtcaggctgaccactttcgctttcgttttcaaccacccatcCA
AACAATCGGTCACGTGACtgtcgaacccccatctcaaataTCCATAATGA
TCCCCTCACGTTTCACTcacattagacttttagtatatagattATTATTC
CCAATGGAATTTACTTTACTTTACTTGGAAGTAGAATAGAAGTTAATCAT
TCTACACTTGGGGTGAAGCtgatataccgggtgcgccacaaaagagtttc
tctctttgaaactaattttctcaaaatctaaagtttttaaaagaaccact
cctatttcattggaaagaagaaagatagacttaaattttgatgggtcatt
tatttaattcgattcattagaacaaaagttatgctcaattgaataaaaaa
gttactttcagaaagtgctcgaaaacgtcaaaaatcgacctatcaaattt
ttactttaaatttggcaattgcaATAGTCTTAACataattaagagcattt
ttccgtaacaaaacacataaattttgaaacgaaAGGGTCGAAAAAGTCAA
cattaaaatttaatttggttTTACTGgaatttttcttagatttttggttc
tagactggataaagtctatgtaaggctggatctacctcgaaacccatatt
tgatgtatttttatgaattttaccagattatttggccttttacgacgaat
tttcttcctttcattgaaattcaaccttattttaaataacttcaaccttt
ctttaaataacaaaaggtcatttagacagctaactatcatttttaatgac
tgaaacgaaaatactgatatatcatAAAACTAttcttctgtttaatttga
taggtcgatttttaacgtttttgagcattttctgaaagtaacttttttat
tcaattgagtataacttttgatctaatgaatcgaatttaataaatgaccc
accaaaatttaattttatctttCTTATTTCCATTGAAatagaaatggttc
ttttaagacttttagatttcgagaaaattagttttaaagagagaaacttt
tttgtggcgcacccggtattatatgtgttttttaaagttgacaaataaaa
gtataattttgaatcagctcttttttttaattttaagttcGTTTTTCTTG
GATTTAGAGTGTCagcattttggaaaattttccctCAATTTGATTCTCTC
GAATACTCTCAGGTGGCTGATAAACAGGGGGTTGGGGGGTGGTGGAAATT
TACAGGGGGGACAGGGGGGGTATTCACAGGGGGATTGGAAATTGTACCTC
TAAATACTCCAGAAGAAGGTAATTATAGACTAAAACCtggatatttattt
tttcttgtgccaggtgaaaatattttcaaaaataaataaaccaaGGGGTC
CTAATTAAGGTTCAGGagattggaaaaaaatcgaaaaaattaacaTCAGA
CCAGAAGAGAACGCCCCCTAGAACGGCGATTCGTGCATAAAATAGATTTA
GTTTGCTCTGGAATGGAGACATTCCATATCAATATTTGTGATGAAATATA
ACTGGCCACATTGAATATTGGAAAATTGAttaattgtttttgaatgactt
tttgaagatctttatcttttttatgacttttaataataattatttcaaaC
TTTATCTTATAGCTGCAAAAAACAGAAGAGGTAAATGTAGAAGTAGCTCC
AGGAACATATGCTATTAGTGCAGGTGCTTGGGGCTCTGATCGCCAGCATA
CTCATGTTATCCATATTAAAGACAACCAAACTGTAGACCTCAATTTTGGA
ATGTGAAGACAATCGCATAccgtactattttgttttgtaaaatatgtaaa
tattttttattattattattgcagtcttttccacttttttatATCGCCTC
AATTCTCAAATTTTGGATCAGAGTATAACTGTATgcttaaatattttgta
attaGGAAATTATTATGAATTTATTAATAGCAGAATACAATTTTGTACCT
TTTTATTTGTTGATTTGAAGGATAAGGGTAGGATCGGGGAGACTTAAGAA
AGGCTCTTAATGCCTCATTATAGTAATTACCTTTCATTATTATCTTCGTC
AATTTTGACACATTGTATTTAGATTCATTTAAATTCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025751-exon-sc0000545-1491911889:144939..145114 | TCONS_00025751-exon-sc0000545-1491911889:144939..145114 | Clytia hemisphaerica | exon |
| TCONS_00025751-exon-sc0000545-1510915933:144939..145114 | TCONS_00025751-exon-sc0000545-1510915933:144939..145114 | Clytia hemisphaerica | exon |
| TCONS_00025751-exon-sc0000545-1575043694:144939..145114 | TCONS_00025751-exon-sc0000545-1575043694:144939..145114 | Clytia hemisphaerica | exon |
| TCONS_00025751-exon-sc0000545-1491911889:145396..145476 | TCONS_00025751-exon-sc0000545-1491911889:145396..145476 | Clytia hemisphaerica | exon |
| TCONS_00025751-exon-sc0000545-1510915933:145396..145476 | TCONS_00025751-exon-sc0000545-1510915933:145396..145476 | Clytia hemisphaerica | exon |
| TCONS_00025751-exon-sc0000545-1575043694:145396..145476 | TCONS_00025751-exon-sc0000545-1575043694:145396..145476 | Clytia hemisphaerica | exon |
| TCONS_00025751-exon-sc0000545-1491911889:146055..146159 | TCONS_00025751-exon-sc0000545-1491911889:146055..146159 | Clytia hemisphaerica | exon |
| TCONS_00025751-exon-sc0000545-1510915933:146055..146159 | TCONS_00025751-exon-sc0000545-1510915933:146055..146159 | Clytia hemisphaerica | exon |
| TCONS_00025751-exon-sc0000545-1575043694:146055..146159 | TCONS_00025751-exon-sc0000545-1575043694:146055..146159 | Clytia hemisphaerica | exon |
| TCONS_00025751-exon-sc0000545-1491911889:148901..149377 | TCONS_00025751-exon-sc0000545-1491911889:148901..149377 | Clytia hemisphaerica | exon |
| TCONS_00025751-exon-sc0000545-1510915933:148901..149377 | TCONS_00025751-exon-sc0000545-1510915933:148901..149377 | Clytia hemisphaerica | exon |
| TCONS_00025751-exon-sc0000545-1575043694:148901..149377 | TCONS_00025751-exon-sc0000545-1575043694:148901..149377 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000545 | supercontig | sc0000545:144939..149377 + |
Blast
The following BLAST results are available for this feature:
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