TCONS_00025744 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025744
Unique NameTCONS_00025744
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025744 ID=TCONS_00025744|Name=TCONS_00025744|organism=Clytia hemisphaerica|type=transcript|length=359bp
tactaatttctcagaattttcgtcgaaattttcaaaatggctgaagcaga
aaaactttgattagaaaattagaaactCTGGCTTCGTTCTAATCTAAATG
aatgtgaaaatgttttactgGCAATCAAATCATCTTCGTAACAGAAAGAT
ACAAATTGAAGTTTTATGATATGGGCTCCTCTCCTCAAGTGCTAAAGGAA
AACCGACAGCCTGATATATGAAACTGCCTTCATATCTAACATACAGTTGA
TCGTCAACACTATTGGAAATCATCTAATCAGAAAGATGAACTCAAAGATG
ATCAAATGATGAGCTTCAAAGACTTTAGGacacttttaaacttttgaggA
CGACCTGGC
Run BLAST on NCBI

transcript from alignment at sc0000544:225560..225918

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025744 ID=TCONS_00025744|Name=TCONS_00025744|organism=Clytia hemisphaerica|type=transcript|length=359bp|location=Sequence derived from alignment at sc0000544:225560..225918 (Clytia hemisphaerica)
GCCAGGTCGTcctcaaaagtttaaaagtgtCCTAAAGTCTTTGAAGCTCA
TCATTTGATCATCTTTGAGTTCATCTTTCTGATTAGATGATTTCCAATAG
TGTTGACGATCAACTGTATGTTAGATATGAAGGCAGTTTCATATATCAGG
CTGTCGGTTTTCCTTTAGCACTTGAGGAGAGGAGCCCATATCATAAAACT
TCAATTTGTATCTTTCTGTTACGAAGATGATTTGATTGCcagtaaaacat
tttcacattCATTTAGATTAGAACGAAGCCAGagtttctaattttctaat
caaagtttttctgcttcagccattttgaaaatttcgacgaaaattctgag
aaattagta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014460XLOC_014460Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025744-exon-sc0000544-1491911889:225560..225918TCONS_00025744-exon-sc0000544-1491911889:225560..225918Clytia hemisphaericaexon
TCONS_00025744-exon-sc0000544-1510915933:225560..225918TCONS_00025744-exon-sc0000544-1510915933:225560..225918Clytia hemisphaericaexon
TCONS_00025744-exon-sc0000544-1575043694:225560..225918TCONS_00025744-exon-sc0000544-1575043694:225560..225918Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000544supercontigsc0000544:225560..225918 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.465996	0.473782	1.55497	1.99432	0	1.51993	1.15332	3.50173	1.25759	8.56971	5.41648	1.4375	2.43505	4.60346	5.36082	4.67389	4.84699	6.60666	11.0299	22.1365	2.11895	3.02391	4.34774	7.1516	0	0.969945	30.3962	21.1936	34.3482	33.8552
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025744 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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