TCONS_00025743 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025743
Unique NameTCONS_00025743
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025743 ID=TCONS_00025743|Name=TCONS_00025743|organism=Clytia hemisphaerica|type=transcript|length=497bp
ATTAAAATTCAGTATAACAAAAGACAAACtctacaaaaatattaactaaA
TACTAATTTTAGCATCTTATAAATTCATTCAAATAAAAcatatcttttta
tttcatGTATGACCTATCACAAAGCCTCTTATATTCTtggaaaatatctc
aaaatttaaGCAGCTAAATAAGACAAGCGACAAGCCTTTAGTTGAGAATA
TTTAAACATAGATTTCACTGTATGTATGGTGATAAAAGAACTCTCTATTT
TTATATGAATGATCAAAATGACCATTACATGTCACTTTCGTTCATTATAC
AAAAATAAACTACCTTAATCTTTGAGGTTTGTGCCTAACAATGAAAGTTT
AGATAGGATTCTATATGGCATAAGTTTGCAGCTACTGAAATATCTAAGTT
GTCAGTGACTGTATTTTTAAGTCCTAGCTTGAAACTCTTGAAGATACCCA
AACTTGTGccatttaaaagcctactgCGTTAAAAGGAGTCCCTTGAC
Run BLAST on NCBI

transcript from alignment at sc0000544:217151..217647

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025743 ID=TCONS_00025743|Name=TCONS_00025743|organism=Clytia hemisphaerica|type=transcript|length=497bp|location=Sequence derived from alignment at sc0000544:217151..217647 (Clytia hemisphaerica)
GTCAAGGGACTCCTTTTAACGcagtaggcttttaaatggCACAAGTTTGG
GTATCTTCAAGAGTTTCAAGCTAGGACTTAAAAATACAGTCACTGACAAC
TTAGATATTTCAGTAGCTGCAAACTTATGCCATATAGAATCCTATCTAAA
CTTTCATTGTTAGGCACAAACCTCAAAGATTAAGGTAGTTTATTTTTGTA
TAATGAACGAAAGTGACATGTAATGGTCATTTTGATCATTCATATAAAAA
TAGAGAGTTCTTTTATCACCATACATACAGTGAAATCTATGTTTAAATAT
TCTCAACTAAAGGCTTGTCGCTTGTCTTATTTAGCTGCttaaattttgag
atattttccaAGAATATAAGAGGCTTTGTGATAGGTCATACatgaaataa
aaagatatgTTTTATTTGAATGAATTTATAAGATGCTAAAATTAGTATtt
agttaatatttttgtagaGTTTGTCTTTTGTTATACTGAATTTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014459XLOC_014459Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025743-exon-sc0000544-1491911889:217151..217647TCONS_00025743-exon-sc0000544-1491911889:217151..217647Clytia hemisphaericaexon
TCONS_00025743-exon-sc0000544-1510915933:217151..217647TCONS_00025743-exon-sc0000544-1510915933:217151..217647Clytia hemisphaericaexon
TCONS_00025743-exon-sc0000544-1575043694:217151..217647TCONS_00025743-exon-sc0000544-1575043694:217151..217647Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000544supercontigsc0000544:217151..217647 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.1842	2.48201	0.139478	0	0.368166	0	0	0.456388	1.21406	0.145471	0.133228	0.353305	0.477986	0	0.322376	0.171228	0.0924757	0	0.140164	0.37224	1.01733	3.65262	0.273521	0.289009	0	0	0.918412	1.60598	1.44276	0.85494
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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