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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025706 ID=TCONS_00025706|Name=TCONS_00025706|organism=Clytia hemisphaerica|type=transcript|length=142bp
AAGAAACTCTCCAGGCTGCCAGGTCAGCTTTTCAAGATACAATACAAACC
AGTTACAAACTGATATTTCGGAGGAACTCGTTCAAAACAGTAATTtgata
tgaaaaagaaaatatgtgTTGTCGGCtcaggaaaatggtaaa Run BLAST on NCBI transcript from alignment at sc0000543:60..5550- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025706 ID=TCONS_00025706|Name=TCONS_00025706|organism=Clytia hemisphaerica|type=transcript|length=5491bp|location=Sequence derived from alignment at sc0000543:60..5550- (Clytia hemisphaerica)
AAGAAACTCTCCAGGCTGCCAGGTCAGCTTTTCAAGATACAATACAAACC
AGTTACAAACTGATATTTCGGAGGAACTCGTTCAAAACAGGTTGACATTG
GTTTTATCTTCTCTGAAAATTGTATTTAGATAGGCTTATTTCTAGCCTGG
GAATCCAAACGTTAAAACTTTGTTCACAGTCTAGTTTATGATACTTTTGC
TGCTTGTTTAATTTATAATTTTAGAACTTTGTGAGGTGAGGTATTTTTTG
TTTTTTCTAAGATTATGAGCTTGGATGCCCAGGCTAGCTTATTTCATGGT
TGCAAATATTACGGCGTTATATTGCCGCCTTGCCGGCCGGCCATTGAACC
AGAATTTGTCTGTATAATAAACAGGCCCAGGGCGCAGGGGGCGGACGACA
CATGATTTCCAAGGAGAAAAGTTTTCACCAAAATTCAAAATTTCTGGGAC
TGTTGATATTCTGGCCTGTAATTTTCACTTTTAGTTTACTGTTTATAAGG
CGGTCATCGAAAAATTGTTCTATTCGCGTCACACCCGCCCGCATCAAATT
TTCCGCTGATTTTCCGGTGCGGAGATGCGGAAAAAAATCTGGGAAAAGCA
ATTTGTTCTTTTAAAATATAGCTTTTTTCTCAATTGCTCTGACGACCATC
GAAAAATTGTTTTGCTTGCGTTACCACCCGCCCCTGAGTTAGTGACGTGA
TTAAAAAATACCTGGGAATGTTTTTGACCGCCCGTCCGCCCGCCCGCATG
TATTTTTAACACCCCTTTGCGACGCGAACAGAGCATTTTTTCGGTGACCG
CCTAATAGGGTGTATGATGATATCATGAAATGACTTTTTTTCAGAATTGC
AGTTTGGACAACTTCTTCTGGTAATTTAATCTATTCTCAGACTTTCTATG
AAAAAAAAAGCTCAAAATCTTCAAAATTGACCGTTTGCCACAGGGTTTTT
TGGGTTGGTCTAAAAAGCAGGGTAGCCAATTGGGCTAGGTTGTGGGGTAC
CTAAATATTTTACAGACCAGAATAGAAATACCGAAAATGAATGCATGAAT
GCACATTTTACTGACCAGGGAGCATGAATCTGATTGATACTTAGATTGAT
CATGTATGATTTCAAAGATAAACAAAGATATAAATTACCATGTGTTAATG
CACGAGGAGTAAGAAATAGCTTCATTATAATAGAGCTATTTCAAAAGACT
TTTTGTACCTATTATAAGCTGCCAAATTTAAAAATTTTGAAAGGAATTAA
TTGTTTGAAACATCTAAACATGATTTAAATTAAACAATAGATTCAATAAC
GAAGGATTGTTAAGATATGACAAGATTAGAGATCATATGGCCCAAAGGCG
ATTCCAAAGCTATTATCATCGAATTACAGCTTCACGGAAATAACAATTAA
AAACATNNNNNNNNNNNNACAATAGATTCAATAACAAAGGATTGTTAAGA
TATGACAAGATTAGAGATCATATGGCCCAAAGGCGATTCCAAAGCTATTA
TCATCAAATTACAGCTTCACGGAAGAAATAACAATTAAAAACATAAATAA
AATCTAAATCTAAAATATTAAAAACTGTTTTGTATGTATTTTTTATTCGG
GTCTGTAAATTTTCAAACGAAGCCAAGANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAAAATCTTCCAACCCCCCCCCCCCCTTAAAAATTAACCCCCTCT
TTTTGTCCAAGCCACCCCTTTTATTTGAAATTTTCACAAGCCCCCTCTTC
TTTTAAATTTAGTAAAATTCTCAAAATCAAAATAGTGAGGTGCCCAATAT
GTAATCATGTACATTCTCTTCTCGCACGGGAGACTAGCTCTTTTTAACCT
GTGTATTGACTATTTAAAAACTTATTCTTTTAATAACTTTCTCGTAGAAA
GTGCCATGCCTTCTAAAATTTGCAAATATGTCAGATGATAATTTGAATAA
TTGACGTCAGAATACTTTTCTTAGAAAGTCTCTGTAGAGGCTTCTTTGAT
TCCAACGTCAAATCCCTTTCTAGACAGGTTTTTATAGGAAGGTGATGCTA
ATTTTCAGTTTATTGAATAACCAATTCTTCCAGCATACATTACTTTCCCT
CAGTCAGTACTAACAGGATATACTTTAGGCGTACAAACTTTTGCGAACAG
AAACTTTTGCGATTTTTGCAAATTTTGGCCTTTTTCGTGAAAGTAAATGT
CTTTATAAATTCTTAACAGGGTAATTCGTGAAAGTTTATGCTCGCGAAAA
ATTCTCAAAAAAATTGGAAATCTATAAACCTTGGGTACAAACTATTGGTC
ACCTTCATCTGCTACAACATCTACAAGATATTCAACTCCTGCAACTTTGT
CCAAAGATTTGCAAATCTGCAGGGTTTGTAGATTGAAATTTGTTGATTGC
CTACATAATTTCTTTTCTCCGCCGTAACAAACGTCGACTAAAGGATGGCT
AAAAATGGGTCTGACAGGTGAGTCCGCCCGCTGTGATAATAAAGAGAAGA
GAAGTCACATGGTTTATCCTTGGTCAGTCATCCATTTTTGACATTCGTAA
CAAATAGCGGTTTTTAATCTTAGTAAATTAAACCAAAGAATAAAAACAAA
TATGGCAGATTTTGTAAATTTTCTGTAGGGTTTGCAGGGTTTGAATGTCC
CAAAGATTTGCACATTTCTTTTTGCTGAGAAAAGGTTGAAATTCAGCTGC
AACTCCTGTGATATCTACAAACAAAGTAGCTCAAGAGGTACTGTGTTTGA
ATCTCCTTCAAACGCTGCAAACCCTTCAAATTTGTGACCAAAGATTTGTA
AATATGGGTTTTTTGTAGGGTTTGTAGGGTTTGCAGTGACCAATAGTTTG
TCCCCCTTGAAATCATAATAAATATCAAATTATTTTATCCTTTTTAAATA
ATGCCTTTTTAAAGTTGTAGAACAACTGTCTCTAGCGGATTTAAGAAATA
TCTTTCACTTTTAAGGCAATTTTTATTTGAAAATTCTCATTTTGCAAAAG
TTTTTGCTCCCGAAAAACATTTTCCCTCAAATTCGCGATAGTAGATATCA
CAAATATCACGATTTTTAGACCTCACAAAAGTTTCTGCTATTTGAACGTC
TAAAGTGTTATCCCTAGATTGCCTAGACAACAGGTGTCTTTAAAAAAAGG
TAAATTAATTAGATGATGCTATCATTAAGAAAAAATATGCTTTAGTAATA
AGTTATTCAATACTGTAGACCATTGCGTCCTTCATGACTATTATGACCAA
CTTTCTCAGACTTTCTCAAATTTTATCAAATTACTTAGATACATGCACGT
TTTTTATAAGGGACGTTAGCTTGGCTCTGAGCCTGGACTTTCTTGTTTTT
GCAGAAAATTTCAGCCTCAAAGTTACTTATCGGGTTTCTTATTTACTTTG
CTGTTAAGTTTGGACTTATATGATGCTTTGTAAACAATTAACTACAATAG
AAAAAGACGTTTATTGGATGTTGTTTCATCAATAATTTATGAACTTTAAT
TATTTAGGTTTTTGATAAAAGTTTAACTTGTGCTGTTCCTTAAAACCCAG
TTTGTAGAATATGGCAAGGCTGCACTCAAGGAAAAATTCGGAAATACAAA
GTTCTGCACTAGGTAGAAGAGCGCACCTGATAAATTTTGGTCCGGACAAG
GTTCACCTATACTTCGGTAATTACCGAGTTTATGTATTTGCACTTTTGAG
GACGGTAGAGTGACTGAAGCTATTTGGAAAAACCCGCAGTTCGGCCCCGC
AAAATCAAGGACGGTAAAAGTGCTGATTTACCGTCGTCCTCAGTTGGTCA
TGATCTAGTCAAATTAGAACCTTACCGTCTCCGCCGCTGAAAAACACACA
TACATAAACTCGGTATTATGACCCAAAAAGGCAAAAAATTGCTAAAATTA
GCTGGACTTGAGGAGAAAATACTTGGGGTTAAAACACCTGAAAATCTCAA
ATTTTGCACCTGCACTCGACTTTTTCCGAGTTGTGCACTCAAGATCTCAA
GCAAATGTGCCACACTCTGAAAAATGGCTGAGCAGTTCTTTAAATATTTC
TTGTTTTCCAGACAAAAAAATGTGCTGTCAAAAAATACAGAGAAATTGTT
TAACAAAAGAAGAGACATGTTTTTGTGCAAAACTAGAACTTTAAATTTTA
TTTTGATTGCTTGATTAGATCTCCGTCTTTCATTTCCAGTAATTTGATAT
GAAAAAGAAAATATGTGTTGTCGGCTCAGGAAAATGGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025706-exon-sc0000543-1575043694:5461..5550 | TCONS_00025706-exon-sc0000543-1575043694:5461..5550 | Clytia hemisphaerica | exon |
| TCONS_00025706-exon-sc0000543-1575043694:60..111 | TCONS_00025706-exon-sc0000543-1575043694:60..111 | Clytia hemisphaerica | exon |
| TCONS_00025706-exon-sc0000543-1510915933:5461..5550 | TCONS_00025706-exon-sc0000543-1510915933:5461..5550 | Clytia hemisphaerica | exon |
| TCONS_00025706-exon-sc0000543-1510915933:60..111 | TCONS_00025706-exon-sc0000543-1510915933:60..111 | Clytia hemisphaerica | exon |
| TCONS_00025706-exon-sc0000543-1491911889:5461..5550 | TCONS_00025706-exon-sc0000543-1491911889:5461..5550 | Clytia hemisphaerica | exon |
| TCONS_00025706-exon-sc0000543-1491911889:60..111 | TCONS_00025706-exon-sc0000543-1491911889:60..111 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000543 | supercontig | sc0000543:60..5550 - |
Blast
The following BLAST results are available for this feature:
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