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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025705 ID=TCONS_00025705|Name=TCONS_00025705|organism=Clytia hemisphaerica|type=transcript|length=1071bp
tatcagaaaaaatgacaatgaaaataaacgCAAAACTATGGTCATTGAAT
GTGGAGCTCACGCAAGAGAATGGGTCAGTGTATCGACATGTGTTTACATC
ATTACTCGGATTGCAAGATCCTCAAATACTGCGAATACAGTTTCGAAGTA
TGACTGGGTCCTTATTCCAGTTTTAAATCCTGATGGATATGTTTACACGT
GGAAGAATTCAACGACACGAATGTGGCGCAAGAATAGGTCATTCACTGAA
GAACAAATGAAAATCTATCTTGAGAAGAAAGATGATGTTTGTATTGGTGT
TGATATTAATCGAAACTTTGATTCGAATTGGGGAGGTCCTGGTGCTCCTA
AAACTCCATGTTTCACAATGTATGCAGGACCAAAGCCTTTCTCGGAAAAT
GAATCCAAAGCACTGGTAAACTTTTTAACGGATAATAAAGACGAAGTTAT
TGCTTACATCTCACTTCATACTTTTGGACAAAAATGGATGACACCTTTCG
GACATTCGAAAGAGAAACCAACCAATCTAAATGAAATGATCCGAATTCTG
GTAGCAGTGTAGACTGGGCTTCTAAAACCTTAAGCATACCCTACACTTAC
CTCGTTGAAATGGTACCTAAAAATGCAACGTTGGAAGTTGGTTTCATGGC
TGAACCTGAGTTAAtgatggaaaattgcaaaaCGATATGGATCGGTTTAC
AAGCTATGGCTTCGCATTTGAAGAATGATTCATGAATGTTAACAAACTCG
ACaccagtcccttagttcgctTTTGTTTGATTATGAAAGCACTCACGAAA
GGCCGCACCCATCCATCAGTAAAATCGAAAAGTGGTGCAAGTGGCTCTCT
GGGATGAGATTGGAATGTTACTGAGGATTAATGATTTTGCCATATTCTTG
AGATACAAaatgacacccccttctcacagacccggtgggattttatcacg
TATCTGCGAATGgggtagactatgctatagtctaagacgagtttcatcta
agaggaacaaacgtgaagacgggaattttttacgggagtagctgttgtcg
taaacacagactctatccgNN Run BLAST on NCBI transcript from alignment at sc0000543:195898..201586+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025705 ID=TCONS_00025705|Name=TCONS_00025705|organism=Clytia hemisphaerica|type=transcript|length=5689bp|location=Sequence derived from alignment at sc0000543:195898..201586+ (Clytia hemisphaerica)
tatcagaaaaaatgacaatgaaaataaacgCAAAACTATGGTCATTGAAT
GTGGAGCTCACGCAAGAGAATGGGTCAGTGTATCGACATGTGTTTACATC
ATTACTCGGGTAAGTCTCGACAATCGTTCGACTGATTCAGatatattaga
aataaagccaAAAGGGGGccaaaagtaatggagggaacaaatttcagtct
tgtttatacaaactaaatcccgtaacaataatcgtattatatctaccgtg
aaaagcacagctcaaaatcatatatttacgctgtgccgacgaatcgagat
tctattcatcgcgcaatcagcaaagacaaaagtaaccatgacgNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctaaaaagag
tcagtgatagagaatcataacataaagtctgtctattatttcgattcaat
taaagtgacatttccataattaaaagtttagtNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaatatttgctct
tcatctttgattttttctacagtgattagattgacacatgcgcgataaaa
tttctattatttgtcttcagaggttactattttttttgataacttaacct
ctgatactcagggtatattatatcatataacgcctacaCCACTGTattta
cacgcattataaacgactccagtctacttgTTTGTGTACTCGTCATTCTT
TGTTTGATTatacttttaccgtcctcaatttGAAAGGTCAAAACtgtggg
ttattccaaatcgcttcagccaGTCCACCgttctcaaaagtgcaaataca
taaacaacTTACGTGTTACCTAAATGTTACCCCATGTTAGGCTGTTGCTA
ACCCTCTAGTGAAAAGAGTTTCTTACACATGGTTTCTTATATAGTTTCGT
GTATATAGAAGTATATCTACAGAAGTCTGCAATTCACACTAACTTCATGT
TTGAGAGATTATTCAAAGTGACGGTTGCTTACCTAATGTAATAGAACATG
TAGTTATGGACCACATAGattagagtctacttttggctgaactttgcttt
tcgatatttttttatgacgctgagtccagtaaagtagactaggagcactt
ggcgaggtcgccattttgagagaaaatgttaaaaatccaaataacaataa
aactacttggagttgaaagataatcaaaaatgagaaacaaccatcaataa
cagatttgcaatccttattctcaaataaaaacattgcctgtttttacctt
ccaaaaacaactaaaatctcccggcggactgttttactgtccgcctaagc
aaaaacatattaccatatactaccgggccacttaatcgcgccatccagtc
tatcaaaaagcttcaAGTGAACCCCGGgctatcccagctggcacacaacg
ttgtttcaacgttcgtctaacgttatatggacgttgtgaacgttagatgg
acgttgaaaaaacgttgaaacaacgttgtgtgccagctgggatggaCCAC
ATTGCTTTTTAAAATGAATATGCTCCGTATTTTAATAAATGATCTCTGAA
ATCTCTAGTCCCTGGCAACAATCATTACTCAAATGATAGATGATTTTATG
AATGAGATTGCTCCACAAACTAGTTAAAAAAACGGTGACCACAAGTCGTT
AGTAAACTTATCGAATATGGTCAATTCTTAACATTCACTAAGTTAACGCa
agtaaaaatttgttttttaacaTTTATCTAGACGGGCAGACAGTCTGGAA
AGGCTGACCGCTCACATTTTATAAATCAATTGAAACGAGAGTACTATAAA
CACCGGAACCTagttttatttttgtgtttttaaaacataaaagactatCG
ATCCAATACTTCAgcccaataaaattataaaactttggtcaaaatttcaa
aaatttatgtaAGACCCTTTGAGTGAGTCAATTTCGGAGTTTCACGGAAT
CCTTATGGACACTGACTTATTCTTCCATGGCTTTTTACTCCTCTGAGGGA
CCTTTGTGAGTTAGAAAAAGGTAACCCTTATGGCTCTCACATACCCAATA
GCCGTTTTACCCAAGCGCGTCCCCAGGGATACGTGTTGTAATAGAATATC
GATAGTTTCTAGTCCCTTGATAAGCAGGCTTTAATGTAAACAAGCTTATA
ATTTATTACGGGTTTAATACAAATACGATAATGAATTTTCTATTGCTGTC
AAAGAGATTGCTCCACAAACCAGTATTAACAAGAGGGACCACAAGTCGTT
TGTAGGCTTGTTGAGTATGGTTTATTTTCAACCACCTCAGCCATGCaagt
aaaatttgttttttaacaTTTATCTAGACGGGCGGAAAGTCTGAAAAGGC
TGACTACCCAAATGACATAATAATTGAATTATATCTACAGAAATCATATA
GGCACATATCTCAACACAGCTGAGAAGTGCGACTGTAAGCTTCTGTGTAT
CAATTTCCACACTCGAAGGGGAAAACAGGGAAAGTCAAGATAACGAATGT
GGCAGTACACTTATTTGTTTGTTCTCCTTACAGATTGCAAGATCCTCAAA
TACTGCGAATACAGTTTCGAAGTATGACTGGGTCCTTATTCCAGTTTTAA
ATCCTGATGGATATGTTTACACGTGGAAGAATTCAACGACACGAATGTGG
CGCAAGAATAGGTCATTCACTGAAGAACAAATGAAAATCTATCTTGAGAA
GAAAGATGATGTTTGTATTGGTGTTGATATTAATCGAAACTTTGATTCGA
ATTGGGGAGGTAATAGATTAATGTTGTGGTCAAACTCGAGCCCAGTCCCT
TAATTCACTATTTTCATCCTAAGATGCACTTTCAAAAGTTTTACGTCTAT
CAGTAAATTCATAAAGTTGTACATGTAGATTggaattgcaaaaaaaagaa
attgtcatTTATAAAAGGTATAAGGCGACTTTAGAATTTAAAAGGGGCaa
tttaattcacttttttgaaaagatatcgAATTGTACATTGTAATTAtgta
ttcataatataaaaagataattgctGGTTGATCACGTTGGTCCTTCCGAT
CACGTTATCatctagactagcaaactagtctgttaatgtcagagggcggg
gaaataaaggcggcgggcgtttgctagaattaggagctgcgtaggagaaa
gAGAAAacgttggtgagaggctgctttcagcccttgccgccgacaaaatt
tcttcctacgcttacctaactcctatgCTCACTTTTCCcacgtgataccg
ttccagcccgactggcgtgccagtctagttatcatttatctgatattccg
atggcgtattggcggccgcNGGGGAGGTAATAGATTAATGTTGTGGTCAA
ACTCGAGCCCAGTCCCTTAATTCACTATTTTCATCCTAAGATGCACTTTC
AAAAGTTTTACGTCTATCAGCAAATTTATAAAGTTGTACATGTAGATTgg
aattgcaaaaaaaagaaattgtcatTTATAAAAGGTATAAGGCGACTTTA
AAATTTAAAAGGGGCaatttaattcacttttttgaaaagatatcgAATTG
TACATTGTAATTAtgtattcataatataaaaagataattgctGGTTGATC
ACGTTGGTCCTTCCGATCACGTTATCatctagactagcaaactagtctgt
taatgtcagagggcgggaaaataaaggcggcgggcgtttgctagaattag
gagctgcgtaggagaacgagaaaaagttggtgagaggctgctttcagtcc
ttgccgccgacaaaatttcttcctacgcttacctaactcctatgCTCACT
TTTCCcacgtgataccgttccagcccgactggcgtgccagtctagttatc
atttatctgatattccgatggcgtattggcggccgcccacgctaaagctc
taaaggagcgggccaataatatttttccgaccttcagagctttagcgtgt
cggaagaaaatttctacatcgactACCAGATAAAGTTATCATccacttta
aaatcttaaatcacgagATCACGAACTTGAACAAACACCAATCACGCTCT
TAGTTAGTTCACATTTAAATTGAGATACATTTCAACCATAGGTCCTGGTG
CTCCTAAAACTCCATGTTTCACAATGTATGCAGGACCAAAGCCTTTCTCG
GAAAATGAATCCAAAGCACTGGTAAACTTTTTAACGGATAATAAAGACGA
AGTTATTGCTTACATCTCACTTCATACTTTTGGACAAAAATGGATGACAC
CTTTCGGACATTCGAAAGAGAAACCAACCAATCTAAATGAAATGgtatat
gtttttgataataataaagaaaaagtgCTTCTTTCCTAGGCCGAGTAACA
AACTTAGATATACAGTGacttaactcaaacaagttttatGACCCCTTCAA
ATGTCAATGTTTTGTTTTAGGAGCGTGTTGCATTACTATCAGTGGAAGCC
ATCAAGAAAGTTAGTGGTCTGGTGTATACAGTAGGATCTTCTCATGATAT
TATGTGTAAGTAGGATGAATCATCACTCCAGAAATTAATTAAAAGCGATA
TTTTTTCATAAGTAAGTCAGTCAATATGCTGACAAATTCATTTAACTTTA
CACCCCCGTATCAAAACTAAACTCGTCCATCTACTAGACATTCGAACCAA
AATCAGCCATTAAAATTCCCGATGAGAGGGCATTATACCGTCGAGTTATA
TCCCTATTGGAAACCCTCATTATAACCATAGATTTAATTTTGACTTATTT
TTTCAGATCCGAATTCTGGTAGCAGTGTAGACTGGGCTTCTAAAACCTTA
AGCATACCCTACACTTACCTCGTTGAAATGGTACCTAAAAATGCAACGTT
GGAAGTTGGTTTCATGGCTGAACCTGAGTTAAtgatggaaaattgcaaaa
CGATATGGATCGGTTTACAAGCTATGGCTTCGCATTTGAAGAATGATTCA
TGAATGTTAACAAACTCGACaccagtcccttagttcgctTTTGTTTGATT
ATGAAAGCACTCACGAAAGGCCGCACCCATCCATCAGTAAAATCGAAAAG
TGGTGCAAGTGGCTCTCTGGGATGAGATTGGAATGTTACTGAGGATTAAT
GATTTTGCCATATTCTTGAGATACAAaatgacacccccttctcacagacc
cggtgggattttatcacgTATCTGCGAATGgggtagactatgctatagtc
taagacgagtttcatctaagaggaacaaacgtgaagacgggaatttttta
cgggagtagctgttgtcgtaaacacagactctatccgNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025705-exon-sc0000543-1491911889:195898..196006 | TCONS_00025705-exon-sc0000543-1491911889:195898..196006 | Clytia hemisphaerica | exon |
| TCONS_00025705-exon-sc0000543-1510915933:195898..196006 | TCONS_00025705-exon-sc0000543-1510915933:195898..196006 | Clytia hemisphaerica | exon |
| TCONS_00025705-exon-sc0000543-1575043694:195898..196006 | TCONS_00025705-exon-sc0000543-1575043694:195898..196006 | Clytia hemisphaerica | exon |
| TCONS_00025705-exon-sc0000543-1491911889:198831..199056 | TCONS_00025705-exon-sc0000543-1491911889:198831..199056 | Clytia hemisphaerica | exon |
| TCONS_00025705-exon-sc0000543-1510915933:198831..199056 | TCONS_00025705-exon-sc0000543-1510915933:198831..199056 | Clytia hemisphaerica | exon |
| TCONS_00025705-exon-sc0000543-1575043694:198831..199056 | TCONS_00025705-exon-sc0000543-1575043694:198831..199056 | Clytia hemisphaerica | exon |
| TCONS_00025705-exon-sc0000543-1491911889:200389..200591 | TCONS_00025705-exon-sc0000543-1491911889:200389..200591 | Clytia hemisphaerica | exon |
| TCONS_00025705-exon-sc0000543-1510915933:200389..200591 | TCONS_00025705-exon-sc0000543-1510915933:200389..200591 | Clytia hemisphaerica | exon |
| TCONS_00025705-exon-sc0000543-1575043694:200389..200591 | TCONS_00025705-exon-sc0000543-1575043694:200389..200591 | Clytia hemisphaerica | exon |
| TCONS_00025705-exon-sc0000543-1491911889:201054..201586 | TCONS_00025705-exon-sc0000543-1491911889:201054..201586 | Clytia hemisphaerica | exon |
| TCONS_00025705-exon-sc0000543-1510915933:201054..201586 | TCONS_00025705-exon-sc0000543-1510915933:201054..201586 | Clytia hemisphaerica | exon |
| TCONS_00025705-exon-sc0000543-1575043694:201054..201586 | TCONS_00025705-exon-sc0000543-1575043694:201054..201586 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000543 | supercontig | sc0000543:195898..201586 + |
Blast
BLAST of TCONS_00025705 vs. Swiss-Prot (Human)
Match: CBPO (Carboxypeptidase O OS=Homo sapiens GN=CPO PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 3.582e-35 Identity = 62/179 (34.64%), Postives = 110/179 (61.45%), Query Frame = 2
Query: 23 NKRKTMVIECGAHAREWVSVSTCVYIITRIARSSNTANTVSKY----DWVLIPVLNPDGYVYTWKNSTTRMWRKNRSFTEEQMKIYLEKKDDVCIGVDINRNFDSNWGGPGAPKTPCFTMYAGPKPFSENESKALVNFLTDNKDEVIAYISLHTFGQKWMTPFGHSKEKPTNLNEMIRI 547
N +K + ++CG HAREW++ + C + + I ++ +++ K D+ ++PVLN DGY+YTW +T R+WRK+RS + C G D+NRNF+++W GA + + G P SE E+KA+ +F+ KD+++ ++++H++GQ +TP+G++K K +N EMI++
Sbjct: 96 NPKKIIWMDCGIHAREWIAPAFCQWFVKEILQNHKDNSSIRKLLRNLDFYVLPVLNIDGYIYTW--TTDRLWRKSRS----------PHNNGTCFGTDLNRNFNASWCSIGASRNCQDQTFCGTGPVSEPETKAVASFIESKKDDILCFLTMHSYGQLILTPYGYTKNKSSNHPEMIQV 262
The following BLAST results are available for this feature:
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