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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025699 ID=TCONS_00025699|Name=TCONS_00025699|organism=Clytia hemisphaerica|type=transcript|length=2878bpRun BLAST on NCBI protein sequence of TCONS_00025699-protein >TCONS_00025699-protein ID=TCONS_00025699-protein|Name=TCONS_00025699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=540bp MANLSDRWYFSKEKIKSSPSVKDGIEHSKELGYRQQCANYVQDIGQRLQVRun BLAST on NCBI transcript from alignment at sc0000543:39863..60879+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025699 ID=TCONS_00025699|Name=TCONS_00025699|organism=Clytia hemisphaerica|type=transcript|length=21017bp|location=Sequence derived from alignment at sc0000543:39863..60879+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000543:39863..60879+ >TCONS_00025699 ID=TCONS_00025699|Name=TCONS_00025699|organism=Clytia hemisphaerica|type=CDS|length=14607bp|location=Sequence derived from alignment at sc0000543:39863..60879+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00025699 vs. Swiss-Prot (Human)
Match: CCNT2 (Cyclin-T2 OS=Homo sapiens GN=CCNT2 PE=1 SV=2) HSP 1 Score: 324.709 bits (831), Expect = 5.662e-97 Identity = 146/246 (59.35%), Postives = 200/246 (81.30%), Query Frame = 3
Query: 225 SDRWYFSKEKIKSSPSVKDGIEHSKELGYRQQCANYVQDIGQRLQVNQLVINTAIVYMHRFYMYHSFKKFQRFDMAPCFVFLAAKIEEMPRKLEHVLKAAHACLKK-EPPLDVKSDEYMRQSEQLVNNESILLQTLGFEVTVEHPNTFVVKCAQLVKASKELAQTAYFLATNSLHLTTFCIEYRPTAVACVCIYVACLWANYIIPES-DEKNWYECIEPTCTKKLLDDLSSHFITILDSSPTRLKR 956
S RW+F++E+++++PS + G+E KEL RQQ AN +Q++GQRL V+QL INTAIVYMHRFYM+HSF KF + ++ +FLAAK+EE RKLEHV+K AHACL EP LD K D Y++Q+++LV E+I+LQTLGFE+T+EHP+T VVKC QLV+ASK+LAQT+YF+ATNSLHLTTFC++Y+PT +ACVCI++AC W+N+ IP S D K+W+E ++PT T +LLD+L+ F+ IL+ +P RLK+
Sbjct: 8 SSRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTQELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEKTPNRLKK 253 The following BLAST results are available for this feature:
BLAST of TCONS_00025699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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