TCONS_00025670 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025670
Unique NameTCONS_00025670
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025670 ID=TCONS_00025670|Name=TCONS_00025670|organism=Clytia hemisphaerica|type=transcript|length=3648bp
tcaGCCCATACTCCAAATACCTTAATCTTCATATCATATAGGACTTTTAG
TCTAAACTGTCAGCCGTGTACTGTAAGTTGGTATAAAATCCCTCTTTTTC
TAATTCCGACGCCCACCTTCAGTGTTGGTAGTTTAGTAAGCAGTATTGTT
TAAAAGTATTAATTCTTgcaaaaaatgaattaaaatgttacaaaaattaA
CACTCTTCAGAAAGATGGTCCCAAGAAGACTAATAAATTGTCCTGAAAAG
ACCAAAATAGGGTGGTTTCTGTGTCAAACTATGTCCCCAAAGACTTTCTT
TAGTGCATGttaaatagaataaaaaccaCTTCTCTATCTGAAGTAAAATG
GGGTGGTAGCATGCAAAAATTCTCTAAAACCTGTTTATTACTCATACaag
tctgagattttagtacaaCCCTGAATGAAAAGCAATGCGTAACAGTATct
gtttattattttcagtgaaaatttcgtaatttaaaataataactAAAATC
AACCATTCAAAGATGTCCTCACAGAACCTCAACAACCACTTCCAAAATCT
TTTATCCAAcATCGATGGAGGGTTAGCAATTCTGGTTACAGACAGGAGTG
GAGTGCCAATAGTCAAAGTGTTATCAGGGAAATGTCCAGAATCTGCGACC
AGAGGGAGCTTCTTGTCCACCTTTGCTACTGCTACAGAACAGgccAGTAA
ATTGGGTTTATCGAAGAACAAACGTATGATTTGTGTATATGAATCTTTTC
AAGTAGTGATGTTCAACTATCTGCCGTTGGTTGTCACAATTATCACTAGC
ACAAACGCTAACACAGGATTGGTGCTGGATTTAGAAAGAGACATTTCGCC
TGTATTGGATAAATTGAAGTCGCACGTCAGAAACTGATGAAACGTACTTT
TTCTAAACATagGTCTCATCGGTAGCCACCTTCAAACAAAACAATGTCAT
TGCCACTAAAAAGGTTTAtgttattttggtatttttttggtataatatTT
CTAGCattatataaaaagataatcacCATTTGAAATACTTGATCAAAAAT
ACagtagctctagtttagacagcTCTACTATCCAAAatcaatgtcttctg
acatcaATGAATGCAAAGACTTCTCTTTTCAAAGCAAGTATTTTAACTGC
CAATTTTTTGGCCACTTTTCGCCTATCAATTGGAAAAGGCGGGCGGAGTC
GGCTGTTTAAACTGGAGCTTAAAGTTGATGTATTTCTTTGAAGCACTTGT
TAACACTAAAATCACTTACTATGAAATTGCCTCTTTTTGAAAGTTTAGCT
ACATTCAAGAATCTAGCTCGTGAAAATCTAAACATCATATCTAAATCACA
GCTTGCTCCTCCATTTAGACAATATAATTTTAATAAGAAAGAATTTTGTA
TTAATTTATTGTACTAATAATGTTTCGAACTGAATTCCATTTCAAATTAT
TCACTTTACAAAATCaatatcaataaaaaaatatttttattatcaTGTTA
AAAAACGAATTTGTTCATTTCTTGTCCTTGAagtttttaatttacaagct
ttttttataagaatagtgtgagggtgagggtcaagtattcttaagaaatt
tccaaaatagagggtgaaatattcttaacgcaTTCTTACTTTTTTACACT
TGACTTTTATACGAACATgataaatgatcaatttgaaaGTTTAAGACTCT
TTAGTGCACATTGGGAGCTAAGATTATATTTCTGCCTCGAAGTTTCAATT
TAAGTCTAacgaaagaaaagtttttcctGTAAGCCAAATaaaatgaatgt
atttttatCAACATTTGTGAAACTCACCCTTGAGGGTAAGGGTGAGTGGG
GTATTTTtggggtattcttacgatttgaccaattttcaccctgatattct
tataaacgatattcatataaaaaaaagcgtgtatatacTTTCACTCAAAA
AGCTAAAGAGAAAGTTTTTTCCACAAAAATATActttctttcaaagcaag
tcCTTGCTTGGAAAATTTCGTTTTTACTTACTGTCATTGAAACAATATAG
TTTCATAAATTAAGCAAATCTAAATAAAATTAGGGTTTTCTTTTACATCT
TTATAAATTTCACTCTGCATAAAAAATATTCATcttaaataagttttttt
ttcattcgtGTGTTTCTGTCGAGTCCTTGAGAGATATAATTTTATTATGA
TATATTCAATGTTTTTCCAATGcattttttcagatatttttatACTTTCA
AGTAGTAAATGGATGGTCCAGTGAAAGCTATTAAACTATTGAAACAGAAG
TTAATTCTGCAGTGTTTCTGAAAGTTCCTGTGAATATTCGCATTTTTTTA
TACCAACCAAActgaaccaaacagtttttccaATTTCCAATTTCAGTCTG
GTCAAGTGCTTGCTGATCTTGTAGGTCATACATTGGCTTCAAATCACTCA
AATCATAATGAATTTATTTATAACTGGTATTCAAATTCACGAATAAATTC
TTGGGTTGAAACTGGACACATACTTTGGCTTTGTTTGTGTTGGTGCATAA
ATCAACAGTTTTGGTCTTACTAATAACTGTCATTCTGCGTTTTTCTTCAT
CCCCGCTCACCAGGAAGTTCTGTCTCTTTTCCTcctcaaacattttcttt
cgcCTCATTCCTCCAAAACTTTGAATAAGCGAggttttgttattgttttg
atctTGCGCTCGTTTCCCTTCACCTGAGAACACAGTTTGAATTGTGAACA
TTGTGTTTCGTGCTTTTCGGCGGCCGTTCAATTCTTTGAGTTTGTCGATT
GTTTTGAATTTGTGGTCGCGTGGTGCGACATTGTTCTCTTTAAACCAATC
ATGAGCAAGTGCTTTGTCAGCATTTAGCCTTGTGTTCATATTTTTATCCA
GGAGTTTCTCTAACAAATCTTTAGCTTCATTTGACACGCCATTCCATAAG
GCGGAAGACAAATCAGCTGGGCGTGTTAAGATGTCTCCGTACATGACTTC
TAGACGATCGTTCCAAAATGGCGGATATCCAACTAATAGGATGTAGAGAA
CAACGCCTGCCGCCCATGTATCAACACCATAGTTGATTGGGTGTTCTAGA
ATAACTTCGGGAGCTAAAAACAATGGCATTCCTTGAGGTTCAACTTTGGT
ATACTTCTGACCTCGTTCCAACCTCAAAGAGAGGCTGAAATCACCAATCT
TTAAAACTTCTCCGTAGTCACTTTGTTTAAGCCAGATATTTTCTGTTGTT
AAGCAACGGTGCACGACGCGCCGTTTACGTAAATATGACAACCCTTCGAA
TAATTGCTTCATGAAGAAGGCTGCATCACGCTCTGTGTAGGTCGTATAAC
TTGGCAATTGGTCAAACAGTTTACCATCTTTAACGAATTCGGTCACTAAG
AACTGCTCTTTGGGCGTATTGAAAATTCGAACCAATTCTATCACATTCTT
ATGTTTCAATCTACGCCATATGGTGCCCTCTCTTGAAAAACGAACGCCCG
AGTTTTCGTATCCTGTGCCAGCTTTTGGTAGAATCTTGACTGCATATTTA
TTGCCACTCTCTCTTTCGATGCATCTATAGGTGTCACCGAATTGGCCTTT
ATACAAGAAAACCGACATGTCGTATACGTCGTCGAAATAAATTCCGTT
Run BLAST on NCBI

transcript from alignment at sc0000542:129201..144762+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025670 ID=TCONS_00025670|Name=TCONS_00025670|organism=Clytia hemisphaerica|type=transcript|length=15562bp|location=Sequence derived from alignment at sc0000542:129201..144762+ (Clytia hemisphaerica)
tcaGCCCATACTCCAAATACCTTAATCTTCATATCATATAGGACTTTTAG TCTAAACTGTCAGCCGTGTACTGTAAGTTGGTATAAAATCCCTCTTTTTC TAATTCCGACGCCCACCTTCAGTGTTGGTAGTTTAGTAAGCAGTATTGTT TAAAAGTATTAATTCTTgcaaaaaatgaattaaaatgttacaaaaattaA CACTCTTCAGAAAGATGGTCCCAAGAAGACTAATAAATTGTCCTGAAAAG ACCAAAATAGGGTGGTTTCTGTGTCAAACTATGTCCCCAAAGACTTTCTT TAGTGCATGttaaatagaataaaaaccaCTTCTCTATCTGAAGTAAAATG GGGTGGTAGCATGCAAAAATTCTCTAAAACCTGTTTATTACTCATACaag tctgagattttagtacaaCCCTGAATGAAAAGCAATGCGTAACAGTATct gtttattattttcagtgaaaatttcgtaatttaaaataataactAAAATC AACCATTCAAAGATGTCCTCACAGGTATATATCTTGattttcttgttatt tttttttaaatgaaaataaggTTTGCATGAAGTGATTTGTAGAATTTACT TGGTGGGTCAAAAAAAGTGTAACATATTATATTATATGGCTTAATAAAGA CCAAATCATTAAAAACGGTTTATGATGTCCTTTTATTTTATGTCCGGGTT GTGCTCAAACATTAATCTTCAAAGGTAGTTTTTCCAACTCTTATAATCAA CCCTTACTAAAGGAATTCAGAGAAAATTCAGCTTTTGCATTAAATATTCC ATTGAAAAAAGGACTTGGATAAATATTGTAGATATTTATTCTTTAGTAGT TTGgttaaataaagttttgaattggTTAGATTTGATTCCTCAATGTTCTC TATTATTCTATTATTCTATATTTGTTTAAATACTTTCAGAACCTCAACAA CCACTTCCAAAATCTTTTATCCAAGTAAGTTGTGttgaatttcttcattt tgactCTTAGTTTTGTCTGGTAAACTTCGATTAAGACATAATATATAATA TCAACTACTCTTTTGAAtgagaaatttaattttaagatTCTATTTCTCTA AATTTGCATCTTCCCAATtcgggctcttccagaaaatgtccgtacatgag ggggggtggaggatataaaatTGTCCAGAGGATagcaaaaattatcaaaa tttgccttgtccgggcaGTAAATTTGCGCTGTCCGGGGTCAATTTGAGTT GTCTGGGGGGTCAACTCAtatttgtccaggggtaaaacctgttgtccggg gggccaaatGTCACTTTGTCCTGGGTAAAttactgaaaattgttatatcc tccaccccccatattcaaattttttttggaaaagcaaGCCCTTTGTTCTT TACTGCTTTGAATTAAAGATTTAAGTTTTGATCATCTTTAAAATAGGAAT CTAAATataattttaaagtctttcagGATGACCTTCGACAGCATTCTGAG TTTTTTGTATGAAACCATATTTAGTATgtcttttaaaagaataaaaagtc tGATTACGATATATACTGTCCCTCTTAGAATTATTATATTGATGTGGTTT TTGTGGCAAAACACTAGGTAAAGTGTCCTTTCGCTGTCAATGGATGCCTT CCTTTCTAGAATATAGTCTATAataattgttgttgttttttcagcATCGA TGGAGGGTTAGCAATTCTGGTTACAGACAGGAGTGGAGTGCCAATAGTCA AAGGTATATTGAGACAAAAACCCAAATGTGAATTTCTTATAACCTgtaca aaaaatattgatttgtgCCAGAAATATTATTTCCACGCTTTTATAATCAA GAGTATATCTAAGTTTCCTTAAAAACAATTATCATTTGATACAGTATGAC TGGGGAATCATAGAAGTGTATATCTTTTCAAGTTCTACTTTAAATTTCTT CTTGATAAAGAAGTTTCTTTCCTGCGTATACAcaggaaaaatttaattta tgaacttttaaaaatgtttgtacaaaaatatctttgttaaaaaatatcta acttgatttcatctccggaggggggggggtacttaggcaaaatgggtgcc gggtatgtgcgagccataagggtaccttttNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtacaaattcaaaagttagtc tctgaaagggtcccaaaatcacgaaaatctaaagtttctctctcaaaggg tcacgatttccaaaaattttgacaaaaatttggtgaaaatcaaaccaaaa tttggaattaAATGGACCAAATTATTaggaaaagtctctcaaagggtccc aaaatcaccaaaattttgtctctcaaagggtcgattttcgattttcggct cggacatacccgtcacctcgcaaacctagtacccccccgggtttCATCTT ATTGAATTTCTTTCGTATTTGCACGTGTTAGTGTTATCAGGGAAATGTCC AGAATCTGCGACCAGAGGGAGCTTCTTGTCCACCTTTGCTACTGCTACAG AACAGGTTGGTTTTTGCTATGGTCTCTGTTTGTTCGTTTTTCTTATTAAT AAGCCTTGCTTTGTGAAAagattggaaaattttggaaaattttcggaaaa ttaacaagcgggggagGGCGTTTATTTTGAATCTAAGAGTAAGTTTttgt ataaattatttttcacagTAGTACCTTTCACTTTTGAATATCTGTGGCTa atgtttttctgttttttttcttcaggccAGTAAATTGGGTTTATCGAAGA ACAAACGTATGATTTGTGTATATGAATCTTTTCAAGTAAGTATACACTGA GCCCTGGAAGAATCTCTTCTCTATACTTTTCCTATAGACGTTTTTCGTGT TTTCTTAAGTTAGTTCTgtcattatggaagcaaacgctCAAATCTGTAAA GGGATccccttacgcaaatcgaacgcTTGCTTGGAGGTTGTTTATGTTTT ATTAAGTTACCTAATTCCCGCCATCATGGaggcaaacgttcgaatttgta GAGGTgatcccttacgcaaatcgaacccTTTACTTCCATAATGGTAGAAT TTATGTTTACGCTTACCCCAAACCACTATAACCAGCAATAGCCACAGTTC CCACCCCCAGCTGCTTTAGtctgagatttttcaaaaattttataggGGGA GGAGTCTTGTAGTTTCCAATCTTAAGAGGGtgttaaacttaaaaaatgaa GCGACTTCTTAGGTTATTTTGGTCAGTCATCATCTTTACGTGACTTTATC AGCACCAAGAGGGGGTTGGTTATTTGAGGggttttaaagtatttttcgCT AGCCTTTTATATTCAGAAAGGAAACCCCTACAAATAACAGcaccaaacaa aaatttggttgaTTAATAAGAGAACATTAATCATATGATTGACACTTTTA ATTCATTGATATTGTAGGTCGCATAGGAAAAGCAAGGAGTTTCTTATTGA TATGCtgacgatttttttcttctttactttTAGGTAGTGATGTTCAACTA TCTGCCGTTGGTTGTCACAATTATCACTAGCACAAACGCTAACACAGGTA GGTctcattttgtattttattgtatCCCGTAGAATCCCGGAGAACCAAAT TCTTTGATTCCTCTAGCTAGAGAGTTAAACTAGAATCTGTTTATGTATCT GTCTGTCTCTGCTGCTCCTCAGTTGCTTAAATGCTAACACAAGTATCTCC CATTCTGTACTTTTTAAGGACTCTTTGGGGAATTCTATCGAATCCCAGAc aaccatttttttttaattgatcgGAGTGAAATTTTCTCTAGTTAAACCag ggggggggtgaagcagttactacaagacatcatgccggttagtaccgtgg tggtgtgccatatgaattggataaaatcacttagtactcaaatgtactaa ctgcaaaaaagggtggtcccctgctaaaaatttgccaaattttggtacta actgtgtaaaaaataggattttgtgagaaaatttaaaaaaaagacaatat tttaccaaaaaagattttggggaagtagattttttttttcaaattttcga atttttttttttaatcttaaaaaCAACTAGCCGTTAGCGCAGCGTCACAC GCTGCGGGTCCGAGACGAGTGAATGTCGTGTTTATGGTTAATTTCGGGGA AAGTAAACATTATTTTTCAAGGGTAATGTGATCTAGGTGGAATTGACAAA GAGCAAAATTCCTTCGATGAAGGACGATTTAGTAACCTGAAGCCATTTGA TTTGgcacattttgaaataaatttcaataaaaagcAGAGAAGGCTAAAAG AGTACCTAAAATCTATCATAAACGTTAACTTTAGTTCCTAATTAGGCCGT AGAAAAGTATCGTAAAAAGGACACAATAATTCTGCGAAACCTCTAGAGTG CTCCTAGacagatagatagatagatagatagttTTTGAGTGACGCCGAAA GTTTACTCTTGATTAATAGGTACCCAACTCTTTCCCGGACAAGATTTAAG GACTATCGGTTATGTACTTTTGGCAGGGTTTTTCAAAACGGGAAGTCcat gagaaaatttttcaaagggaCAAAACATATCAAGTTACGTAAAGCTTTGT TTGTCAAGGAGAAGAGAATAGCATGAATTGCTTTAAAAGAAGGCTGCCAC AGATCTTAAAGAAGTTTTAAATGGAATGCAACATATTTACAGTAATTTGA GTGAGTTTTATCTTTTGTCAAGAATGTAATAAATTCGGATACAACATAAA TTGGCTAtagaaactttaaaaaactaaCATCCACCATGTTGTTTCATGTC GAAAGACTCGAGCAgtaaatgattgaaaaaaatgaaagttgatGCGAGCG ACTACCATGTACCACTGTGGTTGGCAGCATGACTGTAATTTTCCAATGGT ACTGAAATGATCGCGAAATGATCGCGAATGTCTTTTGCCTTTTGTGGCCA ACTCATGGCAAAGTATGAGCTTTTAATATCACTCAGCCAGTTGAAATCGA TGTCTACATCTCGTCTTTAGTTGCCGATTATGTACTCGTCTGTGATTGAT GAGCCTCGTGACGTCATGCGAGCCAAAGCGTTGTACTAAAAATAAACAGT AAAATTTGTATGCGCTGCAAGGGAAATGAGAAAGGGGAAGTGATATATTT GGCAAGTATGAAAGGATGAGACTTGggaaatgcaaaattaaaatcttcta ACTGTTACTTCGACCAAAGATTTAGATGTAGTTTACTTGTACTGAATAGA AGTAATAAGGTTGCAAAAGTAAAGTAACTTACATTCCAAAGTGATGATTG GCGATTCCAATCACTATCCGCTTTGTGTGTTGGTATAGTTGAATCACATG ATTGGTATAAGTTGAGTCATTTTAAAATACACAACATTTTTAATAACTGA AACACGAAAGTGAATAATGAAAAGGTAGAATAGATACAAAATATTATAGA TACACATACACACAAACCCAACAATTACGCAAACCCCGATTCTTGATAGC TTGGAACCCTTAAACTTCAAACTAtcaataaaatgaaagaaacactGAAT CCTCCACAGAAGAGGTAATAATGTAACACGACAGAAATTCTGTTATTTCA AAAGCTCAAAGACCAGTCTATACAAGACCACTACTCACAGAGTAGTTCCA CACTGACATCTTAACAGAGCAAATGGAAGTGTAACAGAGCATATAAAGTC TATAGAAAGTTATAGAATTTGTGGGTAGACTACATTCTTAGTAAGACACT TCCCATTTTTGTACCCTTGACCATGGGATTTAGAGACAACCAACCTAACA CTCTGAAAAGAACGTGTACGTGAGAAAGCAACGTACAATTGGCCGTGAGC AAAGCAAGGTCTTGCAAGTGAGATTCCAACCTTGTCATAGGTCTGTCCTT GACTTTTGTTGATTGTCACAGCATAGGCGTACCGGAAATTGGACCCTTTT TAGCTGAAATGGAAGATTGGTGTCATTGGGACAAAAAGTTATTCTTGGAA TCAAAGTTCTCGCCCCAGCGGAAAATCCGGACAGAATCTCTGCATCAATC AGGTTATTTTGTAAACGACAGACTTTCAGACGTGTTCCATTACAAAGGCC GTCCTTCAATGACAAATTTCTCAATAGCATTATTATAGATCCCTCTTTTA AATTTAGTCTATGCTTTGGCTTCCCACTTGGTGTGAGCGAATGGAGAAAC TCTAGTGGATAAAGATCAACTTCTTCTTGGGTGTCAGCCATCACAGAATC AAAACTAAAGTATGTGCGAACATCACCGCCTAAACATCTTAGAATTTTCT CATTGATCTCCAATGCTTCATTATTAGTTGGCGTCAATATTACCTTAGTT GATTGATCATTGTCGTtttggaaattgaatatatgtGGGACCAAATCGGA GTTCTCGGGTAACACACATTCATCAGGAATTTGGATACATCCTTTAAAAG GATCATCTGGTTTCGCCGGAAGTGCGCCGGCACCAAGACGAAGTAAGAAC TCAGAAAATTCTTGTTCTCCAGGCCCTGTCTTCATGTTTGTACGGAGATA GAATGTTCTAACCAATGCCCAGATGTAGCTACTTTTGAGACATGTTTCTA CAACCTGTGCCGCAGTGCCTCTCTTAACCACAGGAAGTGTCTGGCGAAAA TCACCGCCCAGCAAAATAACCTTTCCAGCAAAAGCAACATCACTATTACT TATATCTCTCAGCATTCGGTCAATAGCTTCTAAAGCATACTTAGAAATCA TAGAAGCttcatcaaaaatgaaaatgtgcTGGCTTCTCAAAAAGTCAGCA TGTTTGCTCGTTGGTTTTACATTACATGAACAACCATCATTGACTGGTAC TGGAAGCTTGAATAAATTATGACAAGTCTTACCACCATCGAGTAGAGTCG CTGCAATCCCTGTCCAAGAAGAAGTTGCAACACAGAAGGATCGAGCTCTA GCCTCTTTGATGATGTAATTATATGTGAATGTTTTCCCTGTACCTCCTGG GCCATCAAGAAAAAACACTTTAGAAGTACCAATATCATTCACAGCAAGAG AATCAAGCACAGTGTCAGAAATGTTGATTTGCTGAGGATTTAACAGCGGT CTAATCCTGTCTGCCGCCTGCCTATTCTCTTGAACATTAGGTTCTTCATC GAGCAAATCAATATTCAAAGGAGGCAGATTAAAATCCACCAAGGCTTTAC CAGCATCTTCTAAAGTCCTCAGTAGGTAAGCTAAAACCAGCTGTTCAGCA TGCAATGCATCGTGATACCTCAAAAAGTCTTCCATCATGTACCCCTTGAA TGATTCCCACAATTCATTTGGGTTATTTGGCCCGCCATGAATAAGTATTg tagaaaaagtttttctaaTCTTAGCTGGAGAAGAAACATGGACAACTTCA TCAAGGGTATTGACCCAAATGTTGTCATCCTCCAGAAGACCTCGAGCTAA ACAGGCTTCCCTGAAAGATTCAAAGATCTGACCATCATAGGTtctcaaat cttcaaaagaCGTAGCTCCTGGAACATGAAGCAATAAAACTCTCAAAAAG TATCTTTCTCCTTCCCGGAGGCTGGCACTATACATTCTAGGGATGACTGT ACCACGTTGTCTAACTTTCCACTTTGATGTGGCTTTGACGAAAACATAAT TGTTTGGAATATCAGGATAGAAAATAGTCCTTGCAGTTGGGTCTTCTTGG TTCAATTTAAACCAAGCTGTCAACATGGTGTCNTAAAATAGTCATTGCAG TTCGGTCTTCTTGGTTCAATTTAAACCAAGCTGTCAACATGGTGTCCTTG TTTTGAGCTCTCTCTACAGCACCTTCCTCGCCTCCAGGTTGAAAATAAAC CCTTTGGAAGTTTGGTAAATGTACAGCAAGCCTTGTGATGATGTGCGTTT GGGTGTGCATGTTGAAGCTAAACAAACGCCAACATGCTTCCGGTGCAGAC ACATAGCGTGCATCAAGGAaagttttgatttcatcgtgatCAATTCTTTC AGCGATTTCAATGTGGGCTGAGTCGTGTTCCTTATAGATGTACTTGTATA AATACTTAACCGCCTTGATGGAAACACAGGCCTCCAAGTTAATGTGTGCA TTGAACCTTTTACTCAGATATGGATTGTATGGTACAACTGATCGGTTGTC AAGATCAAAATTTCGAACACGCACAGTTCGACCATCATCAGGTCGGTAGT AGTGAGGAAAACCATCAACATTAAGGAGCGTACGATCATTGAAACATTTT GGGTAGTTTTTAGAACAACTACCATCCACCATACAAGGACATTGAGGATT GAGGGCACCACATGGCCCATGAatcatgtttgttttgattatctCGTATA GTTCAGGCTCAGTTTCAATATCAGGAATCCTTGCACAAATTAAAGCATCA ATGTCATCAGCATTTCTTAGTTTAAACTCAGGAGTGAAATGCAAGAGCAT GTGGCAATGTGGCAGGCCTCTTTTCTGAAATTCTATGACATCGACACGTG CCACAACCCTACCAAGAACACAATCTTccattatttcttttttcaaagca TAAAGCTTACAGCGAAAAACACGACAAACTAAATCAGGCCTATCCTTGGT TGTTTGTTGAGGTAACAAATTGTCAGTGATTTCCTTCCACCTCGGATTAC AAGTAAAAGTTAGGAAGCAATCAGGTCTACCATACTTTGCAACCACAGCC ATTGCATCCAAATAGAGCTGGTGCATTGCTCGAGGGGACCCAAGGAAAGT AGAAGGGAGAACAATAACATTTCCTGCATTCAAGTTCCGCTGGCCAGCAG CATTTTCAAGGTAATCCATAAGGCCACTATACGAATCAGCCCTTAGATTC TTTTGATTAAAACGGATGTACTGTAACCTACACCCCTCAACTCGGGTGTA CGCATCTACAAGAAACTGCTGAAAAAAAATAACCAGACAAATGGAGTGCA GAGAATTCTTGACGAATAGCCAATCTATAAGCAAAATGTTCAAGCATAGT CACACGATTTCTAACATTTGTAGCTCGCTCTGCAGCTTGACTCATATTCA TATCCCAGCCAATATCCCCTCTAGGGTAAATCAAAGGATAAATCATAGGA TCTATGTTAGAAGAAGTCAACGGCAATCTTTGAAGAGGCTCGTTGTGTGG GTATACCACAATTACTCGGTTTGCAGGAGGAGCACCGCCCTCCCCTGTGA AAACTATTGAAACCTGTTCATGCAATGGGGCATTATACCTTCTATTGTCA TGACCTTCAACCATTCTCATTGTTACTCGTGATACAGGCCGATTTTGTTG TTGTGCTAATGCGTTCTCCTGCTCCTCAACTACTTTCATATACTTGTAAG ATGCAGCAAAAGGATTAACATCGTCAAGAACACTCTGTAAGATAGCCATA ATTTCGCGATCACAATCTGCAGCAGATGGGTTCTGCATCCGTAAGTTCAA AGCATTCCCTGTCTCAATGATATAAAGCTGAGCATACTGTGGCCGGTGTG CTTGTTCTGGGAATAGACTACCATATCTATGTACAATTTGTCCACATATT CTAAAAGTAGGTGGACCCCGACCAGAAGGAGGTGCAATATTGGCAGAAAG AGAAGCGAAAGCAAAACAGTTATTGTAGAGTCGAATCTTATCTCTAAACT TCTTAGCTTGGTTTGAAACTCCTGTAAAAAGTTGGTGAAGCTGAGGTGGA AAAGGTCGCAGCGGGGGAAGCNAGTTCAAAGCATTCCCTGCCTCAATGAT ATAAAGCTGAGCATACTGTGGCCGGTGTGCTTGTTCTGGGAATAGACTAC CATATCTATGTACAATTTGTCCACATATTCTAAAAGTAGGTGGACCCCGA CCAGAAGGAGGTGCAATATTGGCAGAAAGAGAAGCGAAAGCAAAACAGTT ATTGTAGAGTCGAATCTTATCTCTAAACTTCTTAGCTTGGTTTGAAACTC CTGTAAAAAGTTGGTGAAGCTGAGGTGGAAAAGGTCGCAGTGGAGGAAGT ACAACTTTTCCATTTGAGCAACACTTAAAATCATTTTCCCCCTCAAATTT TAATGCCCCACAAAAAGTACAAAGCTGATCAAATTCACCTAAAGAATGTT CCTCAGGAAGGAAGGCAGTAGGTGCTATGCCTAAAATACGAGTCCGTCGC TGTTGGGCTCTTTGGTAAGCATTTTGATGCCATCCAGCAGGCCTGTTTGC ATTTACATCAGTCCTTCGTTCCCTTTCACGTTGGGAGTTCTGAGCGACCT TCTTTCATTGGATTCTTCCTCAGTTTCATTTGCACGCTGGACCCGCATTC GTGCAGCATTTCTCTGTCGGCGTGCTTGTGCTTGTTGTTCTGTTTCACCT TGCCTTGGATTTCTGATGGTATTTCCAAGCCTGCTAGTTTCACCCTGTCC TCTGCCTCTATCTTGACCCCTTGCTCTACCTCTGCCCACACCTCGTCCAC TACCTCTGCCCAAACCTCGTCCTCTGCCTCTACCTTCACCTCGTCCTCTG CCCTCACCTCGTACTGTGCCTCTTCTTTCAACTCTTCCTCGGGCTCTACC TCTTGGCGGCAAATTATCATTCAAAGGAGCCAAATTCTCGCTATCGTCTA AGTTCTCCATCATGGTCAAAATAAATTAGCAACAATCAATTTTAATcaat tcttaaaaaatatcAAGTTCAAAGGCCAGTGGAATTGTTTATCTGGATAA AGGAAGATAGATGGATAAGATGTTGAGAAGAGAGTAATTCGATTCTCAAA TCAAAGTCAAATGCAATGATAGAATTTGCATGGCGATACCAAACCAAAGG ATACAAACGGTGAAAGATAATAAATAAATGGTAGCATGACTATAtgcata aaaatgttcgatgCAATTCAATGTTAatcaattcttaaaaaaacatcaaG TTCAAAGGTCAGTGGCAGATGATGGAATTTGCATGGAGATACAAACCCAA AGGATACAAACGGTGAAAgataataaataaattgaaGCACGACTAATGCA TAAAAATTTATGATGCAGTTTAATGTAGTTACTGACTCAAAAATCTATAC TATAAAATATAAACAGCTTACATTGTATTggtaaaaaaagagaaatatgg GTAGGACTAAAAGTTAAATTCCAGAAAGCAAACCGATCTTAAAAGCCAAA CTTTAAAGTATCAAATTTATATATTCTTATAGCTAACAATAGCACTATAG CAatcttcaaaattaaagataCCTTCTTCACTGACTATGCTCAATCggtc aattttgaaactgaCCGAAAAGAGACCTATCCCTTGAAGCATTccatatt tgaaagaaaaagacgGGGGTTAAAGAAAATGAGAAACCGCCTAAAGCCAT GCACATTATCGACACTCTAAACCCCCCGAAATTGTTGCGAAAAGATGTAT ACTAAAGGCCTATTTACATCTATTCATTACGGTTTAAAAGACCGTGTAAA ACGGACTTAAGATTGTAAGGGCTATTTTAGATTGGAGAAAAACAATCCTT TTCACGGaccaaataaagaaaatgacaaTGTAGAAAGGCCCATATTGCCG ATTGAAGCCAAAAACAATCCGTTTGacgatcaaaacaaaaaattaatatt gtaaacacacacgaataagcgtattaatatatagatttgctggttgcaat agaaatttgaaggtcaaaagcctttttcaaggctaatttcagttagtact aactgtactaagtgtaccaaggtggtggtgttactaacttcttccgagaa agcagttagtaggcatgatgtcttgtactaactgcttcacccccccccct ggttaaACTAGAATCTGAGATGTATGTGTATCTGTTTGTTTGTTTCCTGA AAACTTTAGACCGGAAACTTACcgaaaatggtcggatttggctcccaaaa gattttgtagacctgtctgtttttttttttcattttttgaaaattttgat tttggggaCTTGGGATGAGTTAGCTAAAACTTGGTGGTGGCAgcctgaag gcttcaaaatttttcgattcCGCCTTCAATTCATTGGAAGCAGACAGAAA TTCGTTGGTCTGAGTTATGGCTTTTTAGCAGATTTAACTCTATGGATGAT TTTATTTCCCTCTGCTATCTAATCCTTATTATTGTCTCTTTAGGATTGGT GCTGGATTTAGAAAGAGACATTTCGCCTGTATTGGATAAATTGAAGTCGC ACGTCAGAAACTGATGAAACGTACTTTTTCTAAACATaggtatttcaatt ttttatatgatACCAATACAGGGGCCTGTGAGTATTCGGCTTTATGTTTG TAAATAGTTCATTTCACATGTTGGCATTGTCGGGTCTCAAACTCTTTGAA ACCCTCACCTATCCAAAATTTGGTGGCTTTAGAACTTTTTATTGCTTATA GAGTCAATTTCTAAAGGGCTACAAACACTAAACAATATATTGCCAGACAA TTATTGCCAGCTCCATTTGCAATATTCCAGCCATATAAGGGATCGCTTAa cttacaaaaagaaaataccTTATTATTTCAAAGAGCACCTGCCGTTTACA GTACTTACGACCGTAACATTTATTGTTGAATATTGATCACCAATACATCT TGTAGTCTAAGTAACCATTAACAGACTTAGATATTCTTTCAAAATGTGTA CCCTTGTTTAAAGACCCGTTTTTTAGGTCTCATCGGTAGCCACCTTCAAA CAAAACAATGTCATTGCCACTAAAAAGGTTTAtgttattttggtattttt ttggtataatatTTCTAGCattatataaaaagataatcacCATTTGAAAT ACTTGATCAAAAATACagtagctctagtttagacagcTCTACTATCCAAA atcaatgtcttctgacatcaATGAATGCAAAGACTTCTCTTTTCAAAGCA AGTATTTTAACTGCCAATTTTTTGGCCACTTTTCGCCTATCAATTGGAAA AGGCGGGCGGAGTCGGCTGTTTAAACTGGAGCTTAAAGTTGATGTATTTC TTTGAAGCACTTGTTAACACTAAAATCACTTACTATGAAATTGCCTCTTT TTGAAAGTTTAGCTACATTCAAGAATCTAGCTCGTGAAAATCTAAACATC ATATCTAAATCACAGCTTGCTCCTCCATTTAGACAATATAATTTTAATAA GAAAGAATTTTGTATTAATTTATTGTACTAATAATGTTTCGAACTGAATT CCATTTCAAATTATTCACTTTACAAAATCaatatcaataaaaaaatattt ttattatcaTGTTAAAAAACGAATTTGTTCATTTCTTGTCCTTGAagttt ttaatttacaagctttttttataagaatagtgtgagggtgagggtcaagt attcttaagaaatttccaaaatagagggtgaaatattcttaacgcaTTCT TACTTTTTTACACTTGACTTTTATACGAACATgataaatgatcaatttga aaGTTTAAGACTCTTTAGTGCACATTGGGAGCTAAGATTATATTTCTGCC TCGAAGTTTCAATTTAAGTCTAacgaaagaaaagtttttcctGTAAGCCA AATaaaatgaatgtatttttatCAACATTTGTGAAACTCACCCTTGAGGG TAAGGGTGAGTGGGGTATTTTtggggtattcttacgatttgaccaatttt caccctgatattcttataaacgatattcatataaaaaaaagcgtgtatat acTTTCACTCAAAAAGCTAAAGAGAAAGTTTTTTCCACAAAAATATActt tctttcaaagcaagtcCTTGCTTGGAAAATTTCGTTTTTACTTACTGTCA TTGAAACAATATAGTTTCATAAATTAAGCAAATCTAAATAAAATTAGGGT TTTCTTTTACATCTTTATAAATTTCACTCTGCATAAAAAATATTCATctt aaataagtttttttttcattcgtGTGTTTCTGTCGAGTCCTTGAGAGATA TAATTTTATTATGATATATTCAATGTTTTTCCAATGcattttttcagata tttttatACTTTCAAGTAGTAAATGGATGGTCCAGTGAAAGCTATTAAAC TATTGAAACAGAAGTTAATTCTGCAGTGTTTCTGAAAGTTCCTGTGAATA TTCGCATTTTTTTATACCAACCAAActgaaccaaacagtttttccaATTT CCAATTTCAGTCTGGTCAAGTGCTTGCTGATCTTGTAGGTCATACATTGG CTTCAAATCACTCAAATCATAATGAATTTATTTATAACTGGTATTCAAAT TCACGAATAAATTCTTGGGTTGAAACTGGACACATACTTTGGCTTTGTTT GTGTTGGTGCATAAATCAACAGTTTTGGTCTTACTAATAACTGTCATTCT GCGTTTTTCTTCATCCCCGCTCACCAGGAAGTTCTGTCTCTTTTCCTcct caaacattttctttcgcCTCATTCCTCCAAAACTTTGAATAAGCGAggtt ttgttattgttttgatctTGCGCTCGTTTCCCTTCACCTGAGAACACAGT TTGAATTGTGAACATTGTGTTTCGTGCTTTTCGGCGGCCGTTCAATTCTT TGAGTTTGTCGATTGTTTTGAATTTGTGGTCGCGTGGTGCGACATTGTTC TCTTTAAACCAATCATGAGCAAGTGCTTTGTCAGCATTTAGCCTTGTGTT CATATTTTTATCCAGGAGTTTCTCTAACAAATCTTTAGCTTCATTTGACA CGCCATTCCATAAGGCGGAAGACAAATCAGCTGGGCGTGTTAAGATGTCT CCGTACATGACTTCTAGACGATCGTTCCAAAATGGCGGATATCCAACTAA TAGGATGTAGAGAACAACGCCTGCCGCCCATGTATCAACACCATAGTTGA TTGGGTGTTCTAGAATAACTTCGGGAGCTAAAAACAATGGCATTCCTTGA GGTTCAACTTTGGTATACTTCTGACCTCGTTCCAACCTCAAAGAGAGGCT GAAATCACCAATCTTTAAAACTTCTCCGTAGTCACTTTGTTTAAGCCAGA TATTTTCTGTTGTTAAGCAACGGTGCACGACGCGCCGTTTACGTAAATAT GACAACCCTTCGAATAATTGCTTCATGAAGAAGGCTGCATCACGCTCTGT GTAGGTCGTATAACTTGGCAATTGGTCAAACAGTTTACCATCTTTAACGA ATTCGGTCACTAAGAACTGCTCTTTGGGCGTATTGAAAATTCGAACCAAT TCTATCACATTCTTATGTTTCAATCTACGCCATATGGTGCCCTCTCTTGA AAAACGAACGCCCGAGTTTTCGTATCCTGTGCCAGCTTTTGGTAGAATCT TGACTGCATATTTATTGCCACTCTCTCTTTCGATGCATCTATAGGTGTCA CCGAATTGGCCTTTATACAAGAAAACCGACATGTCGTATACGTCGTCGAA ATAAATTCCGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014411XLOC_014411Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025670-exon-sc0000542-1491911889:129201..129724TCONS_00025670-exon-sc0000542-1491911889:129201..129724Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1510915933:129201..129724TCONS_00025670-exon-sc0000542-1510915933:129201..129724Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1575043694:129201..129724TCONS_00025670-exon-sc0000542-1575043694:129201..129724Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1491911889:130140..130174TCONS_00025670-exon-sc0000542-1491911889:130140..130174Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1510915933:130140..130174TCONS_00025670-exon-sc0000542-1510915933:130140..130174Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1575043694:130140..130174TCONS_00025670-exon-sc0000542-1575043694:130140..130174Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1491911889:130895..130953TCONS_00025670-exon-sc0000542-1491911889:130895..130953Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1510915933:130895..130953TCONS_00025670-exon-sc0000542-1510915933:130895..130953Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1575043694:130895..130953TCONS_00025670-exon-sc0000542-1575043694:130895..130953Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1491911889:131782..131855TCONS_00025670-exon-sc0000542-1491911889:131782..131855Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1510915933:131782..131855TCONS_00025670-exon-sc0000542-1510915933:131782..131855Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1575043694:131782..131855TCONS_00025670-exon-sc0000542-1575043694:131782..131855Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1491911889:132076..132135TCONS_00025670-exon-sc0000542-1491911889:132076..132135Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1510915933:132076..132135TCONS_00025670-exon-sc0000542-1510915933:132076..132135Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1575043694:132076..132135TCONS_00025670-exon-sc0000542-1575043694:132076..132135Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1491911889:132834..132897TCONS_00025670-exon-sc0000542-1491911889:132834..132897Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1510915933:132834..132897TCONS_00025670-exon-sc0000542-1510915933:132834..132897Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1575043694:132834..132897TCONS_00025670-exon-sc0000542-1575043694:132834..132897Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1491911889:141494..141589TCONS_00025670-exon-sc0000542-1491911889:141494..141589Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1510915933:141494..141589TCONS_00025670-exon-sc0000542-1510915933:141494..141589Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1575043694:141494..141589TCONS_00025670-exon-sc0000542-1575043694:141494..141589Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1491911889:142027..144762TCONS_00025670-exon-sc0000542-1491911889:142027..144762Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1510915933:142027..144762TCONS_00025670-exon-sc0000542-1510915933:142027..144762Clytia hemisphaericaexon
TCONS_00025670-exon-sc0000542-1575043694:142027..144762TCONS_00025670-exon-sc0000542-1575043694:142027..144762Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000542supercontigsc0000542:129201..144762 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 2.31258e-09 0 0.230656 0.194329 0.0894776 0 0.13151 0 0 0.261818 7.79762e-11 0 2.60048e-07 7.54002e-08 5.28522 8.39121 3.74679 0.375488 0.0938242 0.271368 1.88294e-10 4.63193e-08 0 0.0604414 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
BLAST of TCONS_00025670 vs. Swiss-Prot (Human)
Match: KCC2G (Calcium/calmodulin-dependent protein kinase type II subunit gamma OS=Homo sapiens GN=CAMK2G PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 1.496e-48
Identity = 117/368 (31.79%), Postives = 191/368 (51.90%), Query Frame = -1
Query: 2554 FDDVYDMSVFLYKGQFGDTYRCIERESGNKYAVKILPKAGTGYENSGVRFSREGTIWRRLKHKNVIELVRIFNTPKEQFLVTEFVKDGKLFDQLPSYTTYTERDAAFFMKQLFEGLSYLRKRRVVHRCLTTENIWLKQSDYGEVLKIGDFSLSLRLERGQKYTKVEPQGMPLFLAPEVILEHPINYGVDTWAAGVVLYILLVGYPPFWNDRLEVMYGDILTRPADLSSALWNGVSNEAXXXXXXXXXKNMNTRLNADKALAHDWF-KENNVAPRDHKFKTIDKLKELNGRRKARNTMFTIQTVFSGEGKRAQDQNNNKTSLIQSFGGMRRKK------MFEEEKRQNFLVSGDEEKRRMTVISKTKTV 3636
            F D Y +   L KG F    RC+++ S  +YA KI+        +   +  RE  I R LKH N++ L    +     +LV + V  G+LF+ + +   Y+E DA+  + Q+ E ++++ +  +VHR L  EN+ L     G  +K+ DF L++ ++ G++       G P +L+PEV+ + P    VD WA GV+LYILLVGYPPFW++    +Y  I     D  S  W+ V+ EAK+L+ ++L  N   R+ AD+AL H W  + + VA   H+ +T++ L++ N RRK +  + T   V S     A+   N K     S GG++++K      +  +   +N LVS  +E   +    + +T 
Sbjct:   10 FTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQ-KLEREARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQ-GEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKLKGAILTTMLV-SRNFSAAKSLLNKK-----SDGGVKKRKSSSSVHLMPQSNNKNSLVSPAQEPAPLQTAMEPQTT 369          
The following BLAST results are available for this feature:
BLAST of TCONS_00025670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCC2G1.496e-4831.79Calcium/calmodulin-dependent protein kinase type I... [more]
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