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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025668 ID=TCONS_00025668|Name=TCONS_00025668|organism=Clytia hemisphaerica|type=transcript|length=901bp
AAATTAGCTGGGATCGGGATTGTCGGTTATCGGTGACTCTCAATCTTCGA
ATAACTTTATTTTTTAGCAAGAAGCTTCATATTATCCACggtataaaaaa
acattttataaaagatcaTCAATAAAAATGCATAAGTGTGAGGTTTGGTC
GGAGCCGTATCACACATATTTTCAACTAGCCTGTTTCGTTGGAGCTTTAA
CATATTTTTGCCCTAACAATTTAAAGGGGTTGATTGCGCTACGTTTGTTG
TTAGGGATGTCTGGTTTCTTGTTTTGCTTGTGGACAGGAACGATCATTTG
TGCGATAGATTCTTTCATCTATAATTTTATATTCGCTTTTGTGAATTTTG
GACACGTGGCTTATCTCTGCTATCAGATGCGCCCCGTTAAGTTCAAGGAA
GACGACCATGAAACATTATACAAAGCCGTCTTCGAACAGTTGGCCATCAA
ACGTTATCAATATAAACCGTTGGTGCAATGGGCGACAACTGTACGACTTT
CCAAGGGTGAATTTTATTCAGTGGAAAATGAAACACGTGGTGAGAAGATC
TCTATTATGTTGATTGGAAGTGCCATTGTGAAGAAGAATGGGAAAGTTTT
GCACAAGATCAAACCTTACGAGTTTTTGGATTCACCAGAATGGGTTCAAA
GTACACAAGGGATTTTCGCAGCTCCTGTCACTTTTGAGGTTTCAATCCAG
TCTGAAGGTTGTACAATCATCTCGTGGAAACGCACAGATCTCATCCGAAC
CTTACGAAAACAACCTCTCGTTAAAAACAAATTCAACTCCATCATTGGTC
AAGATGTAGCAATGAAACTATTCAAAAGCAACAAACTTTTTGACCGCAAT
GACGAGAATAATAATGAATGCACGAGAGTTGATGTAAGACACTTGATGTA
T Run BLAST on NCBI transcript from alignment at sc0000542:62849..66958+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025668 ID=TCONS_00025668|Name=TCONS_00025668|organism=Clytia hemisphaerica|type=transcript|length=4110bp|location=Sequence derived from alignment at sc0000542:62849..66958+ (Clytia hemisphaerica)
AAATTAGCTGGGATCGGGATTGTCGGTTATCGGTGACTCTCAATCTTCGA
ATAACTTTATTTTTTAGCAAGAAGCTTCATATTATCCACggtataaaaaa
acattttataaaagatcaTCAATAAAAATGCATAAGTGTGAGGTTTGGTC
GGAGCCGTATCACACATATTTTCAACTAGCCTGTTTCGTTGGAGCTTTAA
CATATTTTTGCCCTAACAATTTAAAGGGGTTGATTGCGCTACGTTTGTTG
TTAGGGATGTCTGGTTTCTTGTTTTGCTTGTGGACAGGAACGATCATTTG
TGCGATAGATTCTTTCATCTATAATTTTATATTCGCTTTTGTGAATTTTG
GACACGTGGCTTATCTCTGCTATCAGATGCGCCCCGTTAAGGTGAGTagg
tcttttcataaattattttaagtTCAACAACcgcctcgttttgaaatcat
tgccAAGGTGAACCTCGCAAACATATATATGCCCTATAGGAATCAATTAg
cttatcaaaattttgaaacgaGACATGTGGTTTATCTCTGCTATCAAATG
CGCCCAATTAAAGTAAGTAGCCACATATCTCATTCCTTTGCACACTAGAA
GGGCCTACTGGGTGAATGCATTCAAACAAACTACTGAGAGCCCCTTTAGG
TAATATAGAGCTCATAGATAATTATGACTTGGGTagttcaagaaattttt
ttttgtgaattgggctattccagaagaagaaaatttactCCCCATGTTGA
GGAGGTCATTTTTGGAAGGCAAAACCCCGTCGATTTTTGCCAACATATTC
acgaccccctggatttttaagccaattttttaGCTACCGCCTtggatttt
tgctgaaaattcaGGGACCCCCTtgattatttatatattttcattgaCCC
GCCCAATGGATTTACTTTGTTTTTAAGGGGTACCCCCCTGGAATTTCCAA
CTTTCCAGACCCCCCCCCTGGATGTCACACCTTCCTCAACATTCTGCAAT
ATTCTATTATCACAATTACTTCTTTTAAGTTCAAGGAAGACGACCATGAA
ACATTATACAAAGCCGTCTTCGAACAGTTGGCCATCAAACGTTATCAATA
TAAACCGTTGGTGCAATGGGCGACAACTGTACGACTTTCCAAGGGTGAAT
TTTATTCAGTGGAAAATGAAACACGTGGTGAGAAGATCTCTATTATGTTG
ATTGGAAGGTAAGTTTGGCACAATGTTATTTCGATGTCAAACTACTCTCA
GGTGtcctaataaacgcccctcccccCGCGTTAGtacatttttcaatatt
tttccaaCTCCCCGGAACTTCTTAGGACCCCCACAAACtattattgattt
ttgaagatattttcaggtGTCAAAAGAAGAGTcctttattttgctctaaa
tagccagGTTTTCATTGTATAATTACCTTTTTTTTGGGCGGGAGGGGGGT
ATTTAGAGGTACAAATTCCAATGCCCTCGTTTAttagaatttaaagattt
tctaaCCCTCCTCCCACTTTTTTTCCGACCTCCGCTCCGTTTATTAGACA
CCTGAGAGTTTAGTTCATAGCATCAATTTTACCTTAGATGAACGCTTATT
CAAAGTGGTCAAGGCAAGGTATTTTTTTTGTCTAAGACAGAGAATAGATT
TTATACAGCAAATTAGTAcatattcttgaaaattttggtgaattatgcaa
GGTTTTGAAACGGAAAAGTCTTTTCAAATACTTCGCTGTAGCTCTAATGA
ATATATTCAAAACTCAAGACTTGTTATTTTAGATCTTggaaatttacaaa
aaaggaATAAAACAGTAAGAGCCCGAGCGcacacttttctttttattaaa
cacccctttctcacggTCCCGGTGGAACCTCTTCCTACAATGCGGGtgaa
aatttttatcgaaataCCAATGGGGAAAAAAATTCGTTTGTTCTGAGGTA
AAAAAATCCAGCGCGGATGATTTTTGAGTGCAATTCTTTCAAATTTGGAT
GAGAACAAAGTGAATCTTCTTGTGGGGCTGATGAACTTGTGTGGTATTTT
TctcaccggggacaaaatttggcCTAAATTTCCAATGGAGCAGGGGtgcc
agcgggtctgtgacaaagGGGTGTAAATTAGgtgaaagaaattaaatttg
ctGTTCTTCAGGTTTCTACCAAAAATTATGGGTCGGTTGGTTGGTATTCG
GGATtgaattttattcaaaagtactcgaaatatttttactcATATAATGT
TGTCGAACACACCACTTTAGGAGTTCTCTtacaaaatgcaatttttcctc
GTATCTGtagaaatttaattttagttttttttttcaaaacttccagttaa
atcagggtcggtcgggcctgTAGAGCAACAAATTTAGTTTATTTTGCCTA
AGGCTGGAAACTTTTCATTTCCTATCTCcccaacgtttatttaacgtcca
tataacgttagatgaacgttgaaacagcgttgtgtgtcagctgggtcgca
aaaaaaaaggaaacgtGTACTAGAGTCAGatgcaaaaattcaaattattg
cCTAAAACCATAAACATACTAAAACCCACTCTGATAAATGGTTTATAAGG
TACTATATTTGGGTTCTgcgaaaaaatttaacaaaaatgtcCCATCTTTT
GATCTAAGGTCACAAGGCGCTCATAGATTAATTTTCTAATTAAGTTTCTC
CTGTTAATGTGGATGATCTAAGGTCACAAGGTGGTCATATAATTTCTAAT
TAAATTTGTCTTGCTAATCTGGAAATTCGATTACAATTGTACATTACATG
GAATATTGACATCTCTCTCAAATAAAATTCTAAAAGGTTACAGCAAAAAA
CCGGTTCCTCTAACCAGTGAGTGGTAATAACTGATAGCTGAGAGTAACAG
ATTTTCAAGCTAAGAGCTGTGTGTGCAAGAAAGAAAACTGGTATACTACT
GGTTGGGTGTAAGTAATGTATGAGATGTCAGAGAAATATTAACATCGCtc
tcaaaaattcaaacaaaaaaccTGTTCTGGTAGCCAGTGAGTGAAAAGAC
TGCTGataataataaattttcaaGATGGAACTGCTTGACAGGGCAAAAAC
TGGTACCTTACCGGTTGTCTGTAAGTAAAATATGAGATGTAATAAATAAG
AATTCAAATGGAAACAAGTCTTACTGGTGCATGTGAAAGGCGTGCAAAAG
GTATTCCttcttttaaagaaattatGAAAGGATTCCAAGTACTTGTTTTA
CTGGTATGTCAGGTAGGTTGAAAGatcaatggaaaattgttttgagAGAA
CAAAACCTGGGAATATTCTAATAAGTttaaatgggaaaaaatataaaaat
aatttctacAGTTGTCcctctctaatttgatcttgAAGGGACATTTGACT
AGAATTTCTTTCTAGTtgtcaaattattttaaagattcattattctcaaa
aattttcttttctacagTGCCATTGTGAAGAAGAATGGGAAAGTTTTGCA
CAAGATCAAACCTTACGAGTTTTTGGATTCACCAGAATGGGTTCAAAGTA
CACAAGGGATTTTCGCAGCTCCTGTCACTTTTGAGGTTACATTAACCTAC
TTCAAGTTATTACTGTAAAagtcaaacaataaaaaacatgccttgtccag
ggggtaaagttgCTCTGCTTGGGGGTAATTCTCTTGTTTGAGGGTGATTG
TCCATgaggtcaactgatgcttgtccagggggttagacctgctctccggg
ggtcaaaagtcacaatgtccggtgggtaaatatccaaaaaatgtcatatc
CTCCACCCaccatattcaaattttctggaaaagcccattccaCGCGAGGA
CACGTGCGTTTTAGTTTGGAAATAAGCTAACTGCTCTCTATTTTTAGGTT
TCAATCCAGTCTGAAGGTTGTACAATCATCTCGTGGAAACGCACAGATCT
CATCCGAACCTTACGAAAACAACCTCTCGTTAAAAACAAATTCAACTCCA
TCATTGGTCAAGATGTAGCAATGAAACTATTCAAAAGCAACAAACTTTTT
GACCGCAATGACGAGAATAATAATGAATGCACGAGAGTTGATGTAAGACA
CTTGATGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025668-exon-sc0000542-1491911889:62849..63239 | TCONS_00025668-exon-sc0000542-1491911889:62849..63239 | Clytia hemisphaerica | exon |
| TCONS_00025668-exon-sc0000542-1510915933:62849..63239 | TCONS_00025668-exon-sc0000542-1510915933:62849..63239 | Clytia hemisphaerica | exon |
| TCONS_00025668-exon-sc0000542-1575043694:62849..63239 | TCONS_00025668-exon-sc0000542-1575043694:62849..63239 | Clytia hemisphaerica | exon |
| TCONS_00025668-exon-sc0000542-1491911889:63878..64056 | TCONS_00025668-exon-sc0000542-1491911889:63878..64056 | Clytia hemisphaerica | exon |
| TCONS_00025668-exon-sc0000542-1510915933:63878..64056 | TCONS_00025668-exon-sc0000542-1510915933:63878..64056 | Clytia hemisphaerica | exon |
| TCONS_00025668-exon-sc0000542-1575043694:63878..64056 | TCONS_00025668-exon-sc0000542-1575043694:63878..64056 | Clytia hemisphaerica | exon |
| TCONS_00025668-exon-sc0000542-1491911889:66316..66433 | TCONS_00025668-exon-sc0000542-1491911889:66316..66433 | Clytia hemisphaerica | exon |
| TCONS_00025668-exon-sc0000542-1510915933:66316..66433 | TCONS_00025668-exon-sc0000542-1510915933:66316..66433 | Clytia hemisphaerica | exon |
| TCONS_00025668-exon-sc0000542-1575043694:66316..66433 | TCONS_00025668-exon-sc0000542-1575043694:66316..66433 | Clytia hemisphaerica | exon |
| TCONS_00025668-exon-sc0000542-1491911889:66746..66958 | TCONS_00025668-exon-sc0000542-1491911889:66746..66958 | Clytia hemisphaerica | exon |
| TCONS_00025668-exon-sc0000542-1510915933:66746..66958 | TCONS_00025668-exon-sc0000542-1510915933:66746..66958 | Clytia hemisphaerica | exon |
| TCONS_00025668-exon-sc0000542-1575043694:66746..66958 | TCONS_00025668-exon-sc0000542-1575043694:66746..66958 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000542 | supercontig | sc0000542:62849..66958 + |
Blast
BLAST of TCONS_00025668 vs. Swiss-Prot (Human)
Match: POPD1 (Blood vessel epicardial substance OS=Homo sapiens GN=BVES PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 9.067e-28 Identity = 79/248 (31.85%), Postives = 123/248 (49.60%), Query Frame = 2
Query: 137 CEVWSEPYHTYFQLACFVGALTYFCPNNXXXXXXXXXXXGMSG-FLFCLWTGTIICAIDSFIYNFIFAFVNFGHVAYLCYQMRPVKFKEDDHETLYKAVFEQLAIKRYQYKPLV-QWATTVRLSKGEFYSVENETR-GEKISIMLIGSAIVKKNGKVLHKIKPYEFLDSPEWVQSTQGIFAAPVTFEVS-IQSEGCTIISWKRTDLIRTLRKQPLVKNKFNSIIGQDVAMKLFKSNKLFDRNDENNNE 868
CE W E +H F +A A+ P L + + G L+ +W CA+D I+N +F VN H++YL Y+ RPVK E + +Y+ +FE L + ++ L Q+ L KG+ Y+ E++T +++SI+L G V G LH I P F+DSPE+ +STQ F+V+ I + C + W R L L +P + F +IG+D+ +NKL+ ND N+
Sbjct: 34 CENWREIHHLVFHVANICFAVGLVIPTTLHLHMIFLRGMLTLGCTLYIVWATLYRCALDIMIWNSVFLGVNILHLSYLLYKKRPVKI-EKELSGMYRRLFEPLRVPPDLFRRLTGQFCMIQTLKKGQTYAAEDKTSVDDRLSILLKGKMKVSYRGHFLHNIYPCAFIDSPEF-RSTQ--MHKGEKFQVTIIADDNCRFLCWSRERLTYFLESEPFLYEIFRYLIGKDI------TNKLYSLNDPTLND 271
The following BLAST results are available for this feature:
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