TCONS_00025663 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025663
Unique NameTCONS_00025663
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025663 ID=TCONS_00025663|Name=TCONS_00025663|organism=Clytia hemisphaerica|type=transcript|length=1446bp
AATTTCTAGGAaagatttttggataatttctgGTAGATACAAAGGTATCA
TTTTACCGCACGGTAATCTTTTTGCCGCTTTTTTGCTGCACATTTTATCG
ATCTGTCCGCACCAAGACCGgtttcatttttaatgtactcaaaatcgctt
ggggggtcacatataagataaaaattttaaagtgaaatCTGAAATCCTAG
CCagattttcccgattttcccttattattgaaaatcaaagaaattcttca
aaaaacgtaaaattggGCAAACATCAGAAAAACAGGGAATCTTTTTTCCA
GTAATGGGAGACTCAGGTATATAACATTTTTCCTAAAATTGGAAAATCTG
AGAAATGTTTTTCCGAAAATTGGAAAagcaaaaaattaaatcaaaagaac
taaattttcgagaaaaaactgaaaaattgtgacacttttcccaaaaattg
aaaaattggcgCGAGAAATCTAATTGTCTAAAAATTGCTTGAGATAATGT
GGGAAGGTGGGAGTCTCATGCTCCATGCATACACCCACCATACACacact
tctcacagacctggtaggattttttcagccattggAGATAAAAATACCGG
ACTGAAACTATatagggattgatattcccatattttttatggctggggat
tgatattcttttgttttcaagtcagaaaattcaatggggatgggaaaaat
agcataatattttgcagtgaggatcagtttatttgattattctgATTAGG
GACAAAAATAGGAGGATAACTTTCCACTGGGGGCGATATTTTAGGCTCTT
ATAGGCTTTGCTTTTGACAAAGTTAATTTATTTATACTGTCAGTGTTTGA
GTATGTTCTAGTGGTGTGTGCTGCATCAGGAAATAAATATGACAGgattt
gaaataataaaaaataaataaatattggATACTGGTTGCTGTGCTTCTCA
ATATGGAACCTGTTCGTTTTGGTAGTGATTTTAAGAATCAACCAAGGGTT
GGACAGCGTTTTATTCAGTCAACAGCCGGTGCAGTGTCCATAAAGGGAGG
AAAAGGTGATCTTGCTCCACAAAAAGTTTCTGTTAAAAGATACATTGCtg
gaaaaaaaccagaatgggCGCCCGACCAATCCAGTGAAGAGGAAAGTGAA
GATGAAGCCAATGAAGAACGAGAAGAACCTGATGAACCAGAAATTCTTCA
TGCACACGACATTGAAGATGAGCAGGCCGAAGACATCAGACATGACCATG
GAAGGAGAGTGTACGAACCTCGCATCCTCACGCAGCATGATGACGACGAC
AAACAAGATGCAATGGAGATGGAAAGCAGTGAAGAGGAAGAAGATTTCGA
CGAAGAAGCAGCAGCAAGGAGACGTCGAATGTTGAGAGCCAAAGCAAGAT
TCACCACCGCCCAAGACAAGGACTTGTTAGATTTCGAGGAAGAGGA
Run BLAST on NCBI

transcript from alignment at sc0000542:19913..28281+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025663 ID=TCONS_00025663|Name=TCONS_00025663|organism=Clytia hemisphaerica|type=transcript|length=8369bp|location=Sequence derived from alignment at sc0000542:19913..28281+ (Clytia hemisphaerica)
AATTTCTAGGAaagatttttggataatttctgGTAGATACAAAGGTATCA
TTTTACCGCACGGTAATCTTTTTGCCGCTTTTTTGCTGCACATTTTATCG
ATCTGTCCGCACCAAGACCGgtttcatttttaatgtactcaaaatcgctt
ggggggtcacatataagataaaaattttaaagtgaaatCTGAAATCCTAG
CCagattttcccgattttcccttattattgaaaatcaaagaaattcttca
aaaaacgtaaaattggGCAAACATCAGAAAAACAGGGAATCTTTTTTCCA
GTAATGGGAGACTCAGGTATATAACATTTTTCCTAAAATTGGAAAATCTG
AGAAATGTTTTTCCGAAAATTGGAAAagcaaaaaattaaatcaaaagaac
taaattttcgagaaaaaactgaaaaattgtgacacttttcccaaaaattg
aaaaattggcgCGAGAAATCTAATTGTCTAAAAATTGCTTGAGATAATGT
GGGAAGGTGGGAGTCTCATGCTCCATGCATACACCCACCATACACacact
tctcacagacctggtaggattttttcagccattggAGATAAAAATACCGG
ACTGAAACTATatagggattgatattcccatattttttatggctggggat
tgatattcttttgttttcaagtcagaaaattcaatggggatgggaaaaat
agcataatattttgcagtgaggatcagtttatttgattattctgATTAGG
GACAAAAATAGGAGGATAACTTTCCACTGGGGGCGATATTTTAGGCTCTT
ATAGGCTTTGCTTTTGACAAAGTTAATTTATTTATACTGTCAGTGTTTGA
GTATGTTCTAGTGGTGTGTGCTGCATCAGGAAATAAATATGACAGgattt
gaaataataaaaaataaataaatattggATACTGGTTGCTGTGCTTCTCA
ATATGGAACCTGTTCGTTTTGGTAGTGATTTTAAGAATCAACCAAGGGTT
GGACAGCGTTTTATTCAGTCAACAGCCGGTGCAGTGTCCATAAAGGGAGG
AAAAGGTAAgaatcttttataagcatatatttgTACACATAGACAGATTT
ATAaatgaattatcttttcaatgatgTACCCAGGGGTTTTATATAGGCGC
GGCacaataaaagatttttttccagccgaaaattttggaaataagctaaa
aataagctaaaaaattggactttttcctatatttcttttttttttcacac
aaaaacattatttataacaTAACAATGCCTACcattcgttcgtccgttcg
ttcgttagttaccagcttttctcgagattggctcattaggattttctgat
tttttcacaaagatgcataactataaaccctcaaatgtgacggagcccaa
tttttgaaaaaaaaaatttgggggcaaatttgggccaaaaacggctaaaa
acggtttttttggactttgtgaaaaattggatcatcaattttttctgatt
ttttgtatgaaagtaggataccatcataggtaaataATGGctcttaagca
gatttttgcaaaaaaaaatttttggctcaaaaaatgcacttttatctata
agaacgtttttttataagaaacaaacgactaattttaaaaaCCAAATGGC
AAATGACAAGAAaccaaaattctttgaaattgatctttttgctccggcct
aggagcctttaattctctcttccgacaatcgtcaagacatttttttttgt
ttatctaatccgatgatctattccgatttaataaaaacggattatctgaa
TTCCGATAATATTGTGATTTGATCGaccgaaagtatttagaaaaggatgg
ctgccgaaagtgggctagcttattcatgatgttttggacatgatttatga
gaagtttgatgcataactggttctctaacaatgtggaaagactttggaga
aattttggccatggaTCGTCAGCTGGTCGAGTGCTTaaaaatcttgcata
tggctactTCTCTTCTAGAcgcacaaaaccataaaactctgtcatctgta
acttgacaatgaaactttcaaacacacagccattggaattcaaaagagaa
tactaaaattacaacattacagtgcaaatttgaaaacgatctgagtNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaccgttcctt
ttgatttttcaaacccgacacagattttttacaaacatatcactatgaga
attcaataaaggatactaaaacacaattcctgtgtaaatttgaaaaatac
tggagaaattttcacagtgttatggctgaaaatgatcgtttttggacttt
ttcgtaatttcatcgcggctggcggccgttccttttgatttttcaaaccc
gacacagattttttacaaacatatcactatgagaattcaataaaggatac
taaaacacaattcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNgttatggctgaaaatgatcgtgtttggactttgtcgtaatttcatcg
cggctggcgaccattccttttgatttatttcaaacgcgacacagattttt
tacaaacatatcactatgagaattcagtaagtaaaggatactaaaacaca
attcctgtgtaaatttgaacaagatcggagaaattttcacagtgttataa
ctgaaaattatattttttggactttctcgtaatttcattggctggggcga
ccgttccttttgaagatttttcaaacccaaaacaggttttttccaaatac
acTATTGtgccattttatttggtttgatatcctactctcctccaggtatt
atcccaacagaaaaaataatgcttagctaaaagctgtggcctctaattta
ggctatttttctcccaaaattttatccggacaatcaaatcaacggcgcat
catggctttgctattggcaagtttagaaaaaaataaatttatacgaactt
ggaaatattgacttctaaatgtttatctcctttagctccaattttgaact
ttttaatcGAGGATGAGTAGgcgggggtggggttggttctttaggcaaaa
aagtgcatgtgtaatcacttagaagagctaaacttccagctggttatTTA
Ttcattaagattatttctcatactcgctttgcaatagaattattactttg
ctttctgatctgttctgatttagtagtttgtgggcaacgttctaacacaa
ctaactcaataaactcatctttcacatcttttgaTCTCTTCCCccctctt
aagccggagcttccagcgcagctggtttattagtttttctctaaaagtgc
tgattcaacaaaacatttttttccttaTCTCTTGTTTCAGGTGATCTTGC
TCCACAAAAAGTTTCTGTTAAAAGATACATTGCtggaaaaaagtattttt
ttgatattttgttatttaaacgttcttttttatattgcgctatttttatt
ttaatgcaaGCTTGATTTTGGGATCAGGACTAAGTTGCTTATCATTCTTT
GTTCAAATTCTGACAGATTTTCTATGACCACTCAAATTTCTTCCcgtaaa
aattagttcccttttaagacattaaaaaattattttgctgATTTCAGGGC
ATGAGTGACATTGTTTTTTACATAACTATTACTATAATAGAATAGGGCAA
AGTCATTGAGAGTTTAGTTTTCATATCCTGTTATTTCTTAttaattttac
agaccagaatgggCGCCCGACCAATCCAGTGAAGAGGAAAGTGAAGATGA
AGCCAATGAAGAACGAGAAGAACCTGATGAACCAGAAATTGTAATTAACC
GTCCAgaaattgggccattccattccATCAGGGGGTGGAtaaacatttcc
agagggtattCCATGAAAATTAGAACCAGAAattgtaatagaccttttca
gaaatttcataATTTAAGTCAGAAGCAACATTTCAACATGCCATTCAATG
TTATAttcatacagggggtggacgaacatttccagagggtattccgagaa
aaatttccatggttttttttttttcaagagggataaagggttattttaaa
atttcaaggggtaaaagactgattttagttcgttcaCCCTcgctttaagg
tatgaaaagaatctttccaagggtatttttgcaaattttgccagtTTTCC
AGGGAGTATCCACTcattttcaatattattttttgacttgaaaaggttca
tccaccccctgtatggtttttttaatggaacattAAGTCAGAAGCAACAC
TTACATCGTTATTCAAAATATTACTATGGTAATTTATTCCCAGAAGAATT
AATAAGACTGAATAGGTATTATCACCTTGGCCTGCCTtggcaatggtttc
aaaacgaggcagtcgttgcactgtaataatttatcaaaagtcctattgaa
ataaaaatgttcttctctttttaagataatggtattttaaatcatttttt
aattgtgtctagcggTCTGCTTGGTTTATACTGCCTTGAGGGCGCGAGGA
CCTTTATCCCTACCTATATCACCTTTTAAGatattcttttgattttcatt
aCTTTTCATTCTCAGCTTCATGCACACGACATTGAAGATGAGCAGGCCGA
AGACATCAGGTATAACTCTCATAATATTTACTGTAAAGTAAATTACACAA
CACAACACAATATTGTCAGATAACATTTGATGAGTACTGTAtgggtattc
atgatatgcaccactggagagtcttctgaaaacttttacaatattccacc
caatacgtcacttaaacaatagaaaaagtgacgttttgggtgaaacaaaa
acagaaaagttgcataatttcgtgaagtcattgcagtggtgcatatcatg
aattaaattGTATGTTTTGTGCTAATGTCATAAGAAATTCGGTGTTGTAA
GGTAATctcaatatattgaaaaagtgTCTACAGTGTAATACCTCTTCATA
AGCTTGTTGTTTACTTATTACATTACGGCCCACAAacttttttgtcaaat
atttttcgcCAATATATTAAgcactgtaagttggtctaatgttgacatcc
ctcttctaattctgacacccatCTTTAGAAATGAGAATAAttggaaggtc
agaatcactgattaaaaaatatttcttcctcTCTAACGCTAAGCAAATCA
ATCAGCAATTTTGACCGCTCTATTAGATTCTcaactctaaagaagggtgt
cggaattagatgagggatgtcgatattagaccaacttacggtagtgcTAA
GATCATCTTGGTCTGAAAAAAATGACTGTCAATATATTAAATAGTCCTTG
AGATGATTTTGGtcttaaaaataaataactgCCTTAAacgttttgtttta
aaattagagtgatattgtttgcttactcattattttaatttacaagattt
ttgatattgaattgcaaaggatgtggagcaatattgGTCAGGAAGAGGAA
AAGAGAAACAGTTTTTTGCTTATACCAGCACAAAATAACAATAAGCAGAC
Actatcctgatatgaaacgggaacataaaaaaaaattagataaataaatt
ttaaatttttcgtaaAAAGAAAACCTGTAATTTTTTGAATCTCTTTATCT
CTTAGACATGACCATGGAAGGAGAGTGTACGAACCTCGCATCCTCACGCA
GCATGATGACGACGACAAACAAGATGTAATTATGATCCATTTTTAGTTGA
TTTCAATTGCCTTGTAGGGGAATTAATTTATCGGTGAATTCTGGTCAATC
TTGTTCCGCAtttcgtgtcaattcaatgtgaaaaagcttgtaaataaAAG
TTAATGATGAGAAAGCAAACAATATCAAGTTATTTTAATAACAGAACCTT
TATAAACATTATTGTTCTTGAGTTTCCTTTACGGTTTATTTCGTGTCAAA
ATCATCCAGAGGCCTGACACCACTACCTCTCagattttctccaaattttt
accAGATGGAGATATCCATGagaaaagacaaaaatttcACCTCTAACTCC
AAACGTAACGGATTAGTTTTTATGGCACTTTGAAATTTGGCCGTTTTTAG
GCCTGGGCGTGAGAGGTAGTGGTGtgaacattttttgaattttggatgat
tttgGTGATGATTTACCCTTACCTTTATAGGCTCATCAAGTTTATTTTCT
AGACTAGCCTcataacaatttttttctttccttattTTTCAGGCAATGGA
GATGGAAAGCAGGTATGCTGATTGAAAACCCAAATTTAATGTGGTCCTTG
AGCCAGACTGCAGTTGAGGGCTTCTACATTACGATTCCTACATTTGctga
aaatagacaaaaaacaacaacatattTCATAACAACCAACTAAATTCACC
TTCCACAGCCCCGGCTGGCTAGTTTGTCCAAATCAATGTCTTGATTCCAC
TTTGTTTATCATGAAGATTAAGGATTTTGTTAATGCAAAAATCTTAGATC
TTTGATCGCAAAAAAAGTCCAAGTGAACATTTAATCACTTGACGCACATT
CCCGaacgaagaaagaattcaacAAAATCCTTGACCACTATTGACTCCAA
AACCCTATTTAATAGATTCAATGTTGGTTTTATTAGTTTTAATGCCACTT
CTGAATTTACCAAAATCCTTGACCACTTTTGACTCCGTAACCCTGTTTAA
TTGACTCAATGTTGGTTGTTTTAGTTTTAATCCCACGTTAGAATTTAACC
ACTATTGACTCTAAAACCCCTGTCTAATTGACTCAATGTTGGTGGTTTTT
AGTGAAGAGGAAGAAGATTTCGACGAAGAAGCAGCAGCAAGGAGACGTCG
AATGTTGAGAGCCAAAGCAAGATTCACCACCGCCCAAGACAAGGTATTAG
CCTGGTATAATTTAGTTGAAAAAAGACCTTGATAAAATTAGGATCTGGTT
NTCAAGACAAGGTATTAGCCTGGTAGAATCTAGTTGAAAAAAGACCTTGA
AAATATTAGGATCTGGTTGAAGCTTTGACATAGGTGTTTTATGGGTCGCA
GAACGACTAAAATTGTCAGCTCTATCCAGACTATTCTCTCAAGGTTATTT
GCTCTGTTTGtgggtgattttgaatgtttaGCGCTCAACTGATACTTGTC
TGTCCGGGGTTAGACCTTTCGTccgttgggggggggggggggcaaaagNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNgaaaccgaattaaaaaaatgttat
tttctcattctcagcctcagcatgtttcttagatgtttcttagtttttag
gcattctgagcctcatgtttcttaaaagtgtgtttcttaaaaatgtgttt
cttaaaaaaaaaaaacgtgtataggcagtatgcagtgctgacgagtcctg
gtaaggacgaaatgcatatgttGCTCTGCCACttaaatctcctgaaagaa
gaaaGAATCTTTGAAGTTCTTTACATACTTTATTATATATCAATATATTT
TCAGGAAGAGCCCaatataagaatatttcacgtTGCATTCATTTACCAGG
ATTTCTTGAATATAAGAATATTTCATTTGCATTCATTTTTCAGGACTTGT
TAGATTTCGAGGAAGAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014406XLOC_014406Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025663-exon-sc0000542-1491911889:19913..20967TCONS_00025663-exon-sc0000542-1491911889:19913..20967Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1510915933:19913..20967TCONS_00025663-exon-sc0000542-1510915933:19913..20967Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1575043694:19913..20967TCONS_00025663-exon-sc0000542-1575043694:19913..20967Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1491911889:23753..23804TCONS_00025663-exon-sc0000542-1491911889:23753..23804Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1510915933:23753..23804TCONS_00025663-exon-sc0000542-1510915933:23753..23804Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1575043694:23753..23804TCONS_00025663-exon-sc0000542-1575043694:23753..23804Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1491911889:24115..24202TCONS_00025663-exon-sc0000542-1491911889:24115..24202Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1510915933:24115..24202TCONS_00025663-exon-sc0000542-1510915933:24115..24202Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1575043694:24115..24202TCONS_00025663-exon-sc0000542-1575043694:24115..24202Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1491911889:24978..25021TCONS_00025663-exon-sc0000542-1491911889:24978..25021Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1510915933:24978..25021TCONS_00025663-exon-sc0000542-1510915933:24978..25021Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1575043694:24978..25021TCONS_00025663-exon-sc0000542-1575043694:24978..25021Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1491911889:26018..26087TCONS_00025663-exon-sc0000542-1491911889:26018..26087Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1510915933:26018..26087TCONS_00025663-exon-sc0000542-1510915933:26018..26087Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1575043694:26018..26087TCONS_00025663-exon-sc0000542-1575043694:26018..26087Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1491911889:26605..26624TCONS_00025663-exon-sc0000542-1491911889:26605..26624Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1510915933:26605..26624TCONS_00025663-exon-sc0000542-1510915933:26605..26624Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1575043694:26605..26624TCONS_00025663-exon-sc0000542-1575043694:26605..26624Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1491911889:27165..27255TCONS_00025663-exon-sc0000542-1491911889:27165..27255Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1510915933:27165..27255TCONS_00025663-exon-sc0000542-1510915933:27165..27255Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1575043694:27165..27255TCONS_00025663-exon-sc0000542-1575043694:27165..27255Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1491911889:28256..28281TCONS_00025663-exon-sc0000542-1491911889:28256..28281Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1510915933:28256..28281TCONS_00025663-exon-sc0000542-1510915933:28256..28281Clytia hemisphaericaexon
TCONS_00025663-exon-sc0000542-1575043694:28256..28281TCONS_00025663-exon-sc0000542-1575043694:28256..28281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000542supercontigsc0000542:19913..28281 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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