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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025643 ID=TCONS_00025643|Name=TCONS_00025643|organism=Clytia hemisphaerica|type=transcript|length=2681bpRun BLAST on NCBI protein sequence of TCONS_00025643-protein >TCONS_00025643-protein ID=TCONS_00025643-protein|Name=TCONS_00025643-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp MSLMGNTLFVYLLTALVSTQRQVTFTDVRQNKRVVADIIARITTSTQNPVRun BLAST on NCBI transcript from alignment at sc0000541:167881..186351- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025643 ID=TCONS_00025643|Name=TCONS_00025643|organism=Clytia hemisphaerica|type=transcript|length=18471bp|location=Sequence derived from alignment at sc0000541:167881..186351- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000541:167881..186351- >TCONS_00025643 ID=TCONS_00025643|Name=TCONS_00025643|organism=Clytia hemisphaerica|type=CDS|length=11160bp|location=Sequence derived from alignment at sc0000541:167881..186351- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00025643 vs. Swiss-Prot (Human)
Match: DRGX (Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.020e-23 Identity = 49/74 (66.22%), Postives = 55/74 (74.32%), Query Frame = 2
Query: 1547 STSVIDDEYYSMCRSKQRRNRTTFTKQQLEELELTFQRKHYPDINTREALAEKIGITEARIQVWFQNRRAKWRK 1768
S+ DD + R KQRRNRTTFT QQLE LE F + HYPD+ TRE LA KI +TEAR+QVWFQNRRAKWRK
Sbjct: 20 SSGDFDDGFL---RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRK 90 The following BLAST results are available for this feature:
BLAST of TCONS_00025643 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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