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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025639 ID=TCONS_00025639|Name=TCONS_00025639|organism=Clytia hemisphaerica|type=transcript|length=3276bpRun BLAST on NCBI transcript from alignment at sc0000541:112072..139370- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025639 ID=TCONS_00025639|Name=TCONS_00025639|organism=Clytia hemisphaerica|type=transcript|length=27299bp|location=Sequence derived from alignment at sc0000541:112072..139370- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00025639 vs. Swiss-Prot (Human)
Match: APBP2 (Amyloid protein-binding protein 2 OS=Homo sapiens GN=APPBP2 PE=1 SV=2) HSP 1 Score: 411.764 bits (1057), Expect = 6.243e-130 Identity = 243/570 (42.63%), Postives = 331/570 (58.07%), Query Frame = 2
Query: 230 MDLEWVPHEKKDLKPSK--PNLLQLR--IISL-EYVARNVHYFFEQVQALPSSQLIDLFKKMCQLKLVDNLQRLMSNLSLLERLIKHPCNWITMHQALNLVLTKEKDFDY---FLAEQKKAACEMLKKQFTKENICNLNELMQFVHESIILGSFLTEHGRYKSAYIVF-ECVEISDLNGNIEPAMLSMAFDIALRTSHVLTVDCKYNEANKAILNTSLLLSYMHNSGLHPNCALFYTTCSMYMFSLSQYDKAYNLAVQAVQEISCDLSPKIIVDTLRQACKVCIIKRIFSQAHIYINEALKLAKYWFGEDHPKYADCLADYGFYLISVDSVTASVKFYVMALQIRQSLFGDRNLVTSMTHEDLAYAIYVRDYSIGNFESARGHAEQALKTMVELLPEDHLMLSSVKRVQALILEEIALDSDNKVMEARLLGCAEKLHLDALKLAKQTFGEGNVQTAKHYGNLGRLYQSMKRFKEAEVNHVNAIEIKEKLLGKEHYEVALSIGHLASLYNYDMKRYDLAEPLYLRSIDIGRKLFGVWYSGLEYDYRGLAHLYEKTNQHQQSSTYHMALHDW 1912
++LEW+P + S N ++ R I SL E + +V+Y Q +L L + C+L++ + R + LL H C M + + F ++AE A E + + +LG FL++ G Y A VF C+++ L+ E A + +R HV +CKY+ + + + G N A Y +F+ S YD+AY ++A++EI+ L K++VD LRQA K C++KR F +A I A+ LA+ FG HPKY+D L DYGFYL++VD++ SV Y AL IRQS+FG +N+ + HEDLAY+ YV YS G F++A HAE+A+ + +LPEDHL+L+S KRV+ALILEEIA+D NK E RLL A LHL +L+LAK+ FGE NVQTAKHYGNLGRLYQSM++FKEAE H+ AI+IKE+LLG+E YEVALS+GHLASLYNYDM +Y+ AE LYLRSI IG+KLFG YSGLEYDYRGL LY +++ YH L +W
Sbjct: 4 VELEWIPETLYNTAISAVVDNYIRSRRDIRSLPENIQFDVYYKLYQ-----QGRLCQLGSEFCELEVFAKVLRALDKRHLL-----HHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKE------------------KAIQVGFVLGGFLSDAGWYSDAEKVFLSCLQLCTLHD--EMLHWFRAVECCVRLLHVRNGNCKYHLGEETFKLAQTYMDKLSKHGQQANKAALYGELCALLFAKSHYDEAYKWCIEAMKEITAGLPVKVVVDVLRQASKACVVKREFKKAEQLIKHAVYLARDHFGSKHPKYSDTLLDYGFYLLNVDNICQSVAIYQAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKFDNALFHAERAIGIITHILPEDHLLLASSKRVKALILEEIAIDCHNKETEQRLLQEAHDLHLSSLQLAKKAFGEFNVQTAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQYENAEKLYLRSIAIGKKLFGEGYSGLEYDYRGLIKLYNSIGNYEKVFEYHNVLSNW 543 The following BLAST results are available for this feature:
BLAST of TCONS_00025639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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