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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025625 ID=TCONS_00025625|Name=TCONS_00025625|organism=Clytia hemisphaerica|type=transcript|length=4181bpRun BLAST on NCBI transcript from alignment at sc0000541:72276..83134+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025625 ID=TCONS_00025625|Name=TCONS_00025625|organism=Clytia hemisphaerica|type=transcript|length=10859bp|location=Sequence derived from alignment at sc0000541:72276..83134+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00025625 vs. Swiss-Prot (Human)
Match: PKHL1 (Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2) HSP 1 Score: 308.916 bits (790), Expect = 4.477e-85 Identity = 174/412 (42.23%), Postives = 249/412 (60.44%), Query Frame = 3
Query: 945 SISGLTTFQNVKFKDFSSGCNGANNYVWMTSPVYGDILHPTDFKNITLENVGEVNKIYHHAMTTRWINPSDCVDMDCDARRKVLLTNDDGSFFGENGISAISKSEFGWGGDRKWGLNNRRIPKTLLATPSGGRLNADATYPNKGIDRHGGNCVFRSDWRMYRCKDMKYRMFVFESLDKDTEIRRLSPIALATRDGYIDLINGPQDHGWCHGYTCQERVSMFQMIVNMHRHYDLYLTSYNPQKTRLMILNAEEEDAIRLAIYYPKPQRLDIYRLGLYIRPN----NAVVKNGDLSFAPYPADDPDKYLPDTRSFAAG-NWFDEKKNLLYVVVKGKEPVRIVTVPIIQLRIGLSSSKALDEDEFFGPNLAKNIAAFFKIDPKKIFRMNVVSAGEGXXXXXATGSFTVEIDIGDP 2165
+ISGL F F + C+G N +++T+P+ D+ HP KNI L + E +KI+ H +NPSDCVDM CDA+RK L + DGSF G G S I ++E+ W G+ + G+ + RIPK +L +G R+ P+KGI R C + +W+ Y+C M+Y M V ESLD DTE RRLSP+A+ +GY+DLINGPQDHGWC GYTCQ R+S+F IV +++ Y++Y T +PQ RLM+LN + A+ + I++ QRLD+Y L + P NA K+ +L+ Y D++LP+ S G N+FD +LY++VKG PV I T +I + LS A ++D + NL KN+A F KI KI R++ + G+ RR+R+ G F +EI+IGDP
Sbjct: 3601 AISGLLDISGSTFVGFKNVCSGETNVIFITNPLNEDLQHPIHVKNIKLVDTTEQSKIFIHRPDISKVNPSDCVDMVCDAKRKSFLRDIDGSFLGNAG-SVIPQAEYEWDGNSQVGIGDYRIPKAMLTFLNGSRIPVTEKAPHKGIIRDS-TCKYLPEWQSYQCFGMEYAMMVIESLDPDTETRRLSPVAIM-GNGYVDLINGPQDHGWCAGYTCQRRLSLFHSIVALNKSYEVYFTGTSPQNLRLMLLNVDHNKAVLVGIFFSTLQRLDVYVNNLLVCPKTTIWNAQQKHCELNNHLY----KDQFLPNLDSTVLGENYFDGTYQMLYLLVKGTIPVEIHTATVIFVSFQLSV--ATEDDFYTSHNLVKNLALFLKIPSDKI-RISKIR-GKSLRRKRSMG-FIIEIEIGDP 4000 HSP 2 Score: 156.762 bits (395), Expect = 4.944e-38 Identity = 93/318 (29.25%), Postives = 164/318 (51.57%), Query Frame = 2
Query: 2 QFSNCGQLGFNENWDPRYSLAFMNIGEI-DGNASFVSGCSFNDGYNVGIGVYGTHNLTIENNVIYRSVGPAIDLEGRNNKVVHNLMTTALSIQTFRVSEVYASADLNWDGALNLEKAKDFTVVGNSIAGSEKVGIRFPGVPCEEE---SQRVYGNEVHSNLHGLHFKARS-PHCWKADNFLIWKNLDYGIFTWPDKSVVISNSILADNKVSLALHVFGPQVLRHQYGKETITVKDSILIGQSSSFDCTQDAIIPD--HAAKYPVRRRPLPPGKGNVGMKASIFSNNPSTGPKMSWEDPMFYPSISGLTTFQNVKFKDF 934
+F + GQ GF ++ DPRY++ F+N+G+I + +S++ GC+F+ G++ IGV+GT L I++N+I+ +VG I + G N+V NL+ ++ T++ + +S W A+ + + + + N +AG + G R G PC + ++ + NE H L+G++ P C F IW DYGI+ +SV I N L DN +++ ++ P + H+ + + +K S+++G S F+C+ D + D + R P P G G+ F++ + P+ M Y +ISGL F F
Sbjct: 3302 EFYHSGQEGFRDSTDPRYAVTFLNLGQIQEHGSSYIRGCAFHHGFSPAIGVFGTDGLDIDDNIIHFTVGEGIRIWGNANRVRGNLIALSVWPGTYQNRKDLSSTL--WHAAIEINRGTNTVLQNNVVAGFGRAGYRIDGEPCPGQFNPVEKWFDNEAHGGLYGIYMNQDGLPGCSLIQGFTIWTCWDYGIYFQTTESVHIYNVTLVDNGMAIFPMIYMPAAISHKISSKNVQIKSSLIVGSSPGFNCS-DVLTNDDPNIELTAAHRSPRSPSGGRSGICWPTFASAHNMAPRKPHAGIMSYNAISGLLDISGSTFVGF 3616 The following BLAST results are available for this feature:
BLAST of TCONS_00025625 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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