TCONS_00025611 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025611
Unique NameTCONS_00025611
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025611 ID=TCONS_00025611|Name=TCONS_00025611|organism=Clytia hemisphaerica|type=transcript|length=436bp
TGTATTGCAATGGCATTGCTTCTTTTAAACGTCTGCATCGATTCTCAAAG
CTCAAGAAGTTTTCTGATCAAAAGCTCTCATTTTTTTGGTGAAATCATTT
TCTATGAGATGGAAGGTGTCCCGAAAGACGCTGACGTTCATCTTTGTGTA
ATATGCAATGAATTGTGCACTGAGAAACAAAAAAACCCTTCAGAAGAAAC
GTGGAAATCTTTTGAAGAGAATGCAAAACTCTGGCAAGATGTTGAGAGTG
AGTATAGCGAGGTTCACGACAAAATAAATTGGGAAAGCGGTGCGATAGGT
GTGTtttaaaaaggtatttttttcttgtgtGTAATGGGGCCTTAATGTAA
TTCAATAAccgaggatatccagggggtaagaatCTGAAAACCAAAGATAT
CCAGGGGGTGGgggttcaaaattttcaatatccTAG
Run BLAST on NCBI

protein sequence of TCONS_00025611-protein

>TCONS_00025611-protein ID=TCONS_00025611-protein|Name=TCONS_00025611-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
CIAMALLLLNVCIDSQSSRSFLIKSSHFFGEIIFYEMEGVPKDADVHLCV
ICNELCTEKQKNPSEETWKSFEENAKLWQDVESEYSEVHDKINWESGAIG
VF
Run BLAST on NCBI

transcript from alignment at sc0000540:4039..4474

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025611 ID=TCONS_00025611|Name=TCONS_00025611|organism=Clytia hemisphaerica|type=transcript|length=436bp|location=Sequence derived from alignment at sc0000540:4039..4474 (Clytia hemisphaerica)
CTAggatattgaaaattttgaacccCCACCCCCTGGATATCTTTGGTTTT
CAGattcttaccccctggatatcctcggTTATTGAATTACATTAAGGCCC
CATTACacacaagaaaaaaatacctttttaaaACACACCTATCGCACCGC
TTTCCCAATTTATTTTGTCGTGAACCTCGCTATACTCACTCTCAACATCT
TGCCAGAGTTTTGCATTCTCTTCAAAAGATTTCCACGTTTCTTCTGAAGG
GTTTTTTTGTTTCTCAGTGCACAATTCATTGCATATTACACAAAGATGAA
CGTCAGCGTCTTTCGGGACACCTTCCATCTCATAGAAAATGATTTCACCA
AAAAAATGAGAGCTTTTGATCAGAAAACTTCTTGAGCTTTGAGAATCGAT
GCAGACGTTTAAAAGAAGCAATGCCATTGCAATACA

Coding sequence (CDS) from alignment at sc0000540:4039..4474

>TCONS_00025611 ID=TCONS_00025611|Name=TCONS_00025611|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0000540:4039..4474 (Clytia hemisphaerica)
ttaaaACACACCTATCGCACCGCTTTCCCAATTTATTTTGTCGTGAACCT
CGCTATACTCACTCTCAACATCTTGCCAGAGTTTTGCATTCTCTTCAAAA
GATTTCCACGTTTCTTCTGAAGGGTTTTTTTGTTTCTCAGTGCACAATTC
ATTGCATATTACACAAAGATGAACGTCAGCGTCTTTCGGGACACCTTCCA
TCTCATAGAAAATGATTTCACCAAAAAAATGAGAGCTTTTGATCAGAAAA
CTTCTTGAGCTTTGAGAATCGATGCAGACGTTTAAAAGAAGCAATGCCAT
TGCAATACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014373XLOC_014373Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025611-exon-sc0000540-1491911889:4039..4474TCONS_00025611-exon-sc0000540-1491911889:4039..4474Clytia hemisphaericaexon
TCONS_00025611-exon-sc0000540-1510915933:4039..4474TCONS_00025611-exon-sc0000540-1510915933:4039..4474Clytia hemisphaericaexon
TCONS_00025611-exon-sc0000540-1575043694:4039..4474TCONS_00025611-exon-sc0000540-1575043694:4039..4474Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025611-proteinTCONS_00025611-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000540supercontigsc0000540:4039..4474 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.457221	0.884796	1.21189	1.26459	0.832748	0.80374	0.564339	0.526809	0.489403	0	0.416352	0.103943	0.755623	0.354986	0.666669	0	0.120255	0.166139	0.695411	0.604439	0.442236	0	0	9.56467	7.33817	0.428608	0	0.520408	0.353476
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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