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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025600 ID=TCONS_00025600|Name=TCONS_00025600|organism=Clytia hemisphaerica|type=transcript|length=1248bp
CTTATATTCAACCTATCATATTCACCAAGATTTCACACGCGATGGAGAAC
AACATCACCAAAGAAAATGCTCAGTTTCTCATCTCCATTCTCTCCATTGT
ATCCACAATCACCAAAATATTCAGTGGAGTCTTCTTAACAATGCAAAACG
TCATCGATAGATTCTCGCTACTCCTTGCTGCAATGTTCATAGCTGCTCTA
TCTAACATTATTGCAGCTAGGGGCACCACTTACTGGCATTTCTGCATTTT
TTCCATCATTGCTGGACTATGTGAAGGATGTTTTGTTGGACAACTACCAG
CAGTGGCTGTTGGCTTATTACCATCGAAAGATAAAGTTGCTGCTGCGATT
GGGATAATGTTTTCGGTGATTTCAATTCCACTTATGTTGGGCCCTTTGAT
TGCAGGCTACATGGTAAAAGGTGACTCCTTCGTTGCACCGTTCTATATCG
CAACATCCGTGAGTTTCGTTGGTGCTCTTCTTGGTGCCATCTCAAAATTT
CTTGATGCTAATGATAAATCGCACATGGAAGACGAAGAAGAACAGGTCAA
AATGACCTGCAATGGAGAACATTCATTACCTTTACATTACATTTAGATCA
AGACGATTTGACAAAAACCTTACCGTTGGTCGTTACAACTGTTTGAGAAA
TTACTTTTCAGATTTACAACTGATAacttttgtaacatttttacgaatga
aaaaaagagaaacattaTAACCTTTGCTGGCgagggaaaattttcaaaat
ctgttatgttttctttcattcatgaatttaaaagaaattcttGAGAATTC
TCCCCGTGCATACACGAAAACATCAAATGTTGGTTGTAATCTATATCTCA
AAGGTTTATCCCATCAAATAGTTATATATCTTCCTGCGTCACTCGgttca
taaaaaataattttcaattttggaaatccaaaataGTTTTCATCAATTCG
TCTCGAAGACTATTTGATTAATTCATGGTAGGCAGGTAGTCAGGATCTTC
AACTCCATAGATAAATGAAAATTCTGGCTCTGGCTGGCTGCTAATTTTCT
TGAGATACATATTTACTCGGGTTCGAACATCACAAAAACACCAATATTCC
CCCGCAATCTCGCATCCAGAACCACTTGCATCACCTTTTTATTTCATTGA
TGGAAGTTGGTGCAAAAATTGTCGACAATATAAATCAAACAACCAAAAAA
TCTTCGGTTTTTCCACAGCTATTTCCCAGGCCTTTCTTGAGCGTTATC Run BLAST on NCBI transcript from alignment at sc0000540:80261..82200- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025600 ID=TCONS_00025600|Name=TCONS_00025600|organism=Clytia hemisphaerica|type=transcript|length=1940bp|location=Sequence derived from alignment at sc0000540:80261..82200- (Clytia hemisphaerica)
CTTATATTCAACCTATCATATTCACCAAGGTTAATTTCTACTAAACTTAC
TCCATATCATCTGTTAACTATTGAAATAAATCAAACTGATAGAGTTTGGT
TCTTAATAAAAAATATTTTATAACCTTTCAGATTTCACACGCGATGGAGA
ACAACATCACCAAAGAAAATGCTCAGTTTCTCATCTCCATTCTCTCCATT
GTATCCACAATCACCAAAATATTCAGTGGAGTCTTCTTAACAATGCAAAA
CGTCATCGATAGATTCTCGCTACTCCTTGCTGCAATGTTCATAGCTGCTC
TATCTAACATTATTGCAGCTAGGGGCACCACTTACTGGCATTTCTGCATT
TTTTCCATCATTGCTGGACTATGTGAAGGATGTTTTGTTGGACAACTACC
AGCAGTGGCTGTTGGCTTATTACCATCGAAAGATAAAGTTGCTGCTGCGA
TTGGGATAATGTTTTCGGTGATTTCAATTCCACTTATGTTGGGCCCTTTG
ATTGCAGGTCAGTATTATCAGAAAACACTTTGAAAGCAAAAATTTGAACC
CTGTCTCTTGTTGAAATACGGGCTTTTCGGATGTTTCTGATTTGGATCAA
TATCAATGTAAAGAAGTTTTTCGTGTCTCTTAATTTACGTAATTTCTGCT
ATTATGAAAGAAAACATTCGAATCTGTAGAGGCAATCCTTTACGCAAATC
GAACTTTTGCTTCTATATAATGGACGGGTCTACTTAACTTAACAAAACAC
GAATAAAACCTCTATATGTATACCAATAATAATAGACCTGAACCTACCTT
GACTTACCATAGGGTGTTAGATATATTTACTTTACTACTCACACGTATCG
TGTTCTAATGGGTTCCCGGGGGGGCGCACTGACCTTGACAGTCGACAGGA
CGTTAAATCCTGTCAGATATGAATGTATGATGAATTAGGGACCTTGTCAG
AACAAAAACCCTGTCAGATGCCATCAGAGTCTTAAAAAGGGACCCAAACC
AGCGGAACATCCCCGTACTCAAATCTGTCTAAGTGACCCCCAAATAGATT
TCCTTTTCTAGTTCACCACGTTAACTTTGCATCTGTTCATCTTATAGGCT
ACATGGTAAAAGGTGACTCCTTCGTTGCACCGTTCTATATCGCAACATCC
GTGAGTTTCGTTGGTGCTCTTCTTGGTGCCATCTCAAAATTTCTTGATGC
TAATGATAAATCGCACATGGAAGACGAAGAAGAACAGGTCAAAATGACCT
GCAATGGAGAACATTCATTACCTTTACATTACATTTAGATCAAGACGATT
TGACAAAAACCTTACCGTTGGTCGTTACAACTGTTTGAGAAATTACTTTT
CAGATTTACAACTGATAACTTTTGTAACATTTTTACGAATGAAAAAAAGA
GAAACATTATAACCTTTGCTGGCGAGGGAAAATTTTCAAAATCTGTTATG
TTTTCTTTCATTCATGAATTTAAAAGAAATTCTTGAGAATTCTCCCCGTG
CATACACGAAAACATCAAATGTTGGTTGTAATCTATATCTCAAAGGTTTA
TCCCATCAAATAGTTATATATCTTCCTGCGTCACTCGGTTCATAAAAAAT
AATTTTCAATTTTGGAAATCCAAAATAGTTTTCATCAATTCGTCTCGAAG
ACTATTTGATTAATTCATGGTAGGCAGGTAGTCAGGATCTTCAACTCCAT
AGATAAATGAAAATTCTGGCTCTGGCTGGCTGCTAATTTTCTTGAGATAC
ATATTTACTCGGGTTCGAACATCACAAAAACACCAATATTCCCCCGCAAT
CTCGCATCCAGAACCACTTGCATCACCTTTTTATTTCATTGATGGAAGTT
GGTGCAAAAATTGTCGACAATATAAATCAAACAACCAAAAAATCTTCGGT
TTTTCCACAGCTATTTCCCAGGCCTTTCTTGAGCGTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025600-exon-sc0000540-1575043694:82172..82200 | TCONS_00025600-exon-sc0000540-1575043694:82172..82200 | Clytia hemisphaerica | exon |
| TCONS_00025600-exon-sc0000540-1575043694:81694..82069 | TCONS_00025600-exon-sc0000540-1575043694:81694..82069 | Clytia hemisphaerica | exon |
| TCONS_00025600-exon-sc0000540-1575043694:80261..81103 | TCONS_00025600-exon-sc0000540-1575043694:80261..81103 | Clytia hemisphaerica | exon |
| TCONS_00025600-exon-sc0000540-1510915933:82172..82200 | TCONS_00025600-exon-sc0000540-1510915933:82172..82200 | Clytia hemisphaerica | exon |
| TCONS_00025600-exon-sc0000540-1510915933:81694..82069 | TCONS_00025600-exon-sc0000540-1510915933:81694..82069 | Clytia hemisphaerica | exon |
| TCONS_00025600-exon-sc0000540-1510915933:80261..81103 | TCONS_00025600-exon-sc0000540-1510915933:80261..81103 | Clytia hemisphaerica | exon |
| TCONS_00025600-exon-sc0000540-1491911889:82172..82200 | TCONS_00025600-exon-sc0000540-1491911889:82172..82200 | Clytia hemisphaerica | exon |
| TCONS_00025600-exon-sc0000540-1491911889:81694..82069 | TCONS_00025600-exon-sc0000540-1491911889:81694..82069 | Clytia hemisphaerica | exon |
| TCONS_00025600-exon-sc0000540-1491911889:80261..81103 | TCONS_00025600-exon-sc0000540-1491911889:80261..81103 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000540 | supercontig | sc0000540:80261..82200 - |
Blast
The following BLAST results are available for this feature:
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