TCONS_00025596 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025596
Unique NameTCONS_00025596
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025596 ID=TCONS_00025596|Name=TCONS_00025596|organism=Clytia hemisphaerica|type=transcript|length=361bp
tattgcaccaacgcgaaaaaaacttctcgtgtccccaagcctttacaact
tgatttattttttagttcAAAAACGAAAGACAGAATGAGATTAGCTTTTA
TAATATTGATGACAGTACTGGTCATCTTGACAGCTCATATAACAAACGCT
AAGGAACAAGGTGGAAAACCCGGTGGACCTGGTGGAAAACCTCCTCCAAG
AGAAGGTGGAAAACCCCCACCAGGGAAAGGTGGAAAACCTCCTCCAAGAC
ATGGTGAAAAACCCAGAGGAGCCGATGGAAAACTTGAGAGAAccgaaaat
gaaaagaaaagagaCGAGGCCCGTAGcaaaatcaaagatgagttcaaaac
aggaaaaaaaN
Run BLAST on NCBI

transcript from alignment at sc0000540:166836..167438+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025596 ID=TCONS_00025596|Name=TCONS_00025596|organism=Clytia hemisphaerica|type=transcript|length=603bp|location=Sequence derived from alignment at sc0000540:166836..167438+ (Clytia hemisphaerica)
tattgcaccaacgcgaaaaaaacttctcgtgtccccaagcctttacaact
tgatttattttttagttcAAAAACGAAAGACAGAATGAGATTAGCTTTTA
TAATATTGATGACAGTACTGGTCATCTTGACAGCTCATATAACAAACGCT
AAGGAACAAGGTGGAAAACCCCCTCAAAGAGAAGGTGGAAAACCCGGTGG
ACCTGGTGGAAAACCTCCTCCAAGAGAAGGTGGAAAAACTCCTACAAAAG
AAGGTGGAAAACCCCTTCCAAGAGAAGGTGGAAAACNGGAAAACCCCCTC
AAAGAGAAGGTGGAAAACCCGGTGGACCTGGTGGAAAACCTCCTCCAAGA
GAAGGTGGAAAAACTCCTACAAAAGAAGGTGGAAAACCCCTTCCAAGAGA
AGGTGGAAAACCCGGTGGACCTGGTGGAAAACCTCCTCCAAGAGAAGGTG
GAAAACCCCCACCAGGGAAAGGTGGAAAACCTCCTCCAAGACATGGTGAA
AAACCCAGAGGAGCCGATGGAAAACTTGAGAGAAccgaaaatgaaaagaa
aagagaCGAGGCCCGTAGcaaaatcaaagatgagttcaaaacaggaaaaa
aaN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014364XLOC_014364Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025596-exon-sc0000540-1491911889:166836..166995TCONS_00025596-exon-sc0000540-1491911889:166836..166995Clytia hemisphaericaexon
TCONS_00025596-exon-sc0000540-1510915933:166836..166995TCONS_00025596-exon-sc0000540-1510915933:166836..166995Clytia hemisphaericaexon
TCONS_00025596-exon-sc0000540-1575043694:166836..166995TCONS_00025596-exon-sc0000540-1575043694:166836..166995Clytia hemisphaericaexon
TCONS_00025596-exon-sc0000540-1491911889:167145..167162TCONS_00025596-exon-sc0000540-1491911889:167145..167162Clytia hemisphaericaexon
TCONS_00025596-exon-sc0000540-1510915933:167145..167162TCONS_00025596-exon-sc0000540-1510915933:167145..167162Clytia hemisphaericaexon
TCONS_00025596-exon-sc0000540-1575043694:167145..167162TCONS_00025596-exon-sc0000540-1575043694:167145..167162Clytia hemisphaericaexon
TCONS_00025596-exon-sc0000540-1491911889:167256..167438TCONS_00025596-exon-sc0000540-1491911889:167256..167438Clytia hemisphaericaexon
TCONS_00025596-exon-sc0000540-1510915933:167256..167438TCONS_00025596-exon-sc0000540-1510915933:167256..167438Clytia hemisphaericaexon
TCONS_00025596-exon-sc0000540-1575043694:167256..167438TCONS_00025596-exon-sc0000540-1575043694:167256..167438Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000540supercontigsc0000540:166836..167438 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.501515	0	0.26966	0.775654	0	0.155165	7.05449	1.6004	3.5343e-09	0	0	2.3822	1.23605	0	0	0	0.898253	0.62936	0	4.61728	0	0	1.15946	0	7.40354	6.91499	0	0	1.04443	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025596 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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