TCONS_00025587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025587
Unique NameTCONS_00025587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025587 ID=TCONS_00025587|Name=TCONS_00025587|organism=Clytia hemisphaerica|type=transcript|length=4555bp
tttgaaactcgatttttaatttcaatttgatATTGCTTTGTTCTAAAAGT
ttatgacattttgaaaaatggaaacTATTTTGGTTAACTGGACATTGAAT
AGGTGATTCGTATCTTGTTTAAAAGTCTTTGAATTTAGGAGATTTGGGAA
GAACCAATTATTACAATGTTGATCCCAAAAGGTGGATTAAAGTCTCAACA
TGCCATTTACGAAGGTGTTCGAAATAAACCAGGTGCTTCTGGGAGCACTG
GTGATAGCCAAGCCATACCTTTTTCTCTCGGTAATTATTATGCACCTATT
GAAGACGAAGCCGACGAATTTGACCGCACGTTTGACGAGAACGCAGGTGA
AAATGGAGGCACGGAACAAAGCGCGCCAAGTGGTGCTTTCAATTCAAACC
ATGTTTACGATGGAAATCATAAACAGCGGGATCTATCTGCATCTGCACCA
AGAACAAAAACAGCTGATGGTAAAAAGGAACAACCTATCGTTTCCAAATC
CATCGATACCGAGGATGATTCAAAACCaggtgaagatgaaaaagaaacta
aaaagaaaagaaaacatagaaaacctAAGAATGATGAAACCGGGCTCGTC
TCTTCTAATGCGGGAGAATTGTCCGTGAAATCAACACCTAAATCTCATCG
AAAACACATACCAGAAGGAAGTGGACCTCAAACAAAGCCTAGTACTCCTC
TTTCTACTCAAACAAAAAGTCGCCAACAACAGAAAAACAATAAACTAATA
ACTGCTAAATTTAATGGTGCTAGCTCCTCAACCCTGGAAAGTGATACCAC
GAATGGATCCTCTTCGCGCCCTGGTTCTGGAAAATCTGCAAATCCTGGTT
CACGACCTATGACAGGTGGCCCTTCTAGGCCGATATCAGGTGTTTCTAGA
CCGGCCTCTGGTATAACTAGACCGAAGTCTGGCAAATCAAGACCACCCAC
TGGTTCTTCGATTGCACAAAACAATAGTGGGGAAATGAGTTTGCAAGCTG
GGCATTCGAGACCAACATCTGGAAAAACAAGTCAATCAAGACCACAAACT
GGTCAATCGAGACCAACCTCAGGAAAGATTTCATCGCATGGATTAgcaaa
caatcaaaatggtagcatGAGCGAGGTTAGGCCACGTACAAGTGAACAGG
GATCTGGTACGTCAGCCAATAGACCATTTTCAGCTAGTAGACCACAATCC
GGTGTATCAAGAAAAAGTATCACATCAATAAAAGACAGTCTTTTATCAAA
GCGCGGTGGCTCAGGTGTGCAGGACGGTGACCTATATGGGAAATCAGATG
ACGATGATTTAGAGAAATGTATGACACCTCCACGATCGGCCTCCAATAAT
CATGCGCAAAATGTGAACGCAGGAGAAACTACTCAACAATCACGTGAAAA
CAGTCGACAATCTCAACGGAAAGGTGTCGAAAAGCTTCCTCCACTAACCT
CCATTACAACTACAAACACACCTTCTCATCCGTCACAAGATGAAAACGCG
CGGCCGCTTTCGACCGCTTCACGTCCAGAAGAGGAAAGCGAGAAATCGAA
TATTGAGGAATCCGCCACACCTTTAACTGGAAGATCGACAGCGTACGAAA
CGTATCGCGATGGAAGTGATGACGAACTAAAAAGACTTGCTCTTCAAATC
GATGACAGTATATATGATCCATTAGCAtcactcgaaaatttaaagaaatc
aCGACAACGTGGATCTTCaactaaacttcaaaataacgCGCATAGTGCAA
TCTCTCTAAAGGCTGGAACTGAATCGAAAACACCAGCTAGCGTAAAtggt
tcaaaaatttcattggGCGATGAAGGGAAGATAGAAACGGAGAAATCAGA
AGGTAATGCAAATGACGACGACGACGGAGAAAATATATggaatgatgacg
tcactaaCAAACCAACCAATGAGTTTCAAGAAGCGGGAAGTTCTGATCAA
CCTCGAACTGAATCACACCAAAGAGAAGATTCTCCACAAAAACAAACTCT
TCCTTCAACTGAAAATGATTTAACAGAGTCTACGCAAGAGCCTGAAAAAT
CAGATAAACCAAGTCAAGGATTTCTGGTCAAACCTATTAATGCTGACATA
GGATCTCCTATCAAAAGTGAAGAAGACAAAGCTAAAGAAGGGCCAGGAGA
TACGCAGGGTGCTGATGGAACAAAGGCTACATATGGAGCAGGGGCTAACG
GAGCGCAGGCTACTACTGATGGTGACAAAATGAGGGCCAACACAGGAAAT
GGAGGTGGAGAGGGTGCAACAGGCGGAAGTAAAGAAAACTTTAATATTCC
CGTTGGTGACGATGACGATGAAGAAGGAACTGTTAACAATGGAGAAGATG
ACGTCACCAAATCTGCATCAGCAGAGACGGAAGATATTTATCGCAAGAAA
CCAAGATGGCATCCACCTTGGCAATTGAGACAGGAAATTGTCGCTCATCA
AGGAGCAATCCCTGAACTAGTGATCGATCCAACTAATCGCTGGTTTGCTA
CTGGATCACAAGATAAGACTATACGGTTGTGGGACATTAATACTGGAAAA
CAGAAACTGGTGATCAAAGCTCACAAACGGGAGATCCGGGCTCTTGCATT
CGGTGCAACAGGTCACCGGAAGCTCTATTCAGCAGGGGATGATCGGCAAC
TATTATGTCATGATGTCGAAGTGAATCGGGTCATACAGAAATTCAAAGGT
CAAACATCTGTCATTTACGATATGGCAATTTACCATCCCGAGAATTTATT
AATCAGTTGTGGCCGTGATAAGCTATTGAAAGTGCACGATTTGCGCACAG
AGAAGATCGTGCGTTCAATGCGTGGTCACACGAACACTGTATCACAAGTT
GTCACcaacaattttcataaaatgGTCATTAGTGCTGGTCACGATTCAAC
GATCCGGCTCTGGGACATCGGAGATGGTCGTTGTATATCAACACTCTATG
GTCACAAGAAAAGTGTGCGCGCCTTGTGCTCAGACCCCGatggaaaaaaa
ttcttatccGCATCCAGTGAGCTGATATTAGCTTGGGAGCTTCCATTGGG
AGATATGATACAAGAGATCGAGGCTAAAGATATCGCAATCAATACAATCA
CATCGAATCAATATGGTGTCGTGGTTGCCGGAGGATCTAACGGTTATATG
AATTTATGGGACTTTGATACTGGTTTTCGATTCCAACGCATCAGTCGTGC
ACGTGTGTACGAATCGCATGAAGTACCTATTTGTGTGTTCGCTTCAAAAT
TCGATAAGACTGGGAAGAAACTAATTTGTTCAGATGCGTGCAACGTTGTG
AAGATCTATGGAGAAGCATACACATCTAGGGTAGGTTCATCTGGAGTTGT
TGAACGAGTTACAGTGCAAGGGAGTCAAATGTTGATCAGTCACATTGATA
ACTCAATGAGATCGTTCAAGAACAGTGACACACGACTTTAAAATCATTTG
GTAATTATTGACCCGAAGAAAAAATTGGTTTTATTTGTAAGACACCGAAA
ATGAACTTTTTCTTCTATTATGTtcgatgaaaatgaaataaaaatagata
ttagTTTAGACATTTTTTGAATTACTGTTCAATCTAAGAAGTTAGATCGC
CGCCAAAATTCGAtccttcaagtcgtcccgtcgtactAGAAGTCGTGCCG
TCGCAATTTTCGGTAGTCGAATCATCCCAAGtttcaagtcgtcccgtcgc
actAGAAGTTCGCAGGTCTTAATTCTTTTAAGTCGAACCATACCAAGTTT
CTAAACTTGGTACATGTTCCAATCATGTACgtttaactgttttcataagt
gTTCATGTCATCCATCAGGTATATTATGGAgatgaaaatataaatataaa
ttcacATTGCACACCACACGAACATAACATTATCTccacaatattttgat
ttttgatatacgaaacaataaagttttttttcggaaTAGCCTAGAGTCCA
ACTCTTTGGGATGAGTCGACTGCCGAAATTTGCAACGATTCAAGTTCTGA
GGCAACGACTAGACTTAAAATTTGGAATGTTTCCACTTCCAAAAGATTCC
GACTTGCGAACTTCTAATGCGACCTGCGGACTTCTAGTACGACGGGATAA
CTTCTagtacgacgggacgacttgaaggaTCGAATTTTGGCGGCGATCTA
ACTTCATATCAATCTTATATTCATTCTTTCACTTCATTTTACATTCATTC
ACTCTATCATTCTTTCATTCATTCACTCTATCATTCTTTCATTCATAGAT
TTAGCTAAACAATAGATCGCTCCTTTAATCACTCactttttcattcattc
attcattcattcattcattcattcattcattcattcattcattcattcat
tcattcattcattcattcattcattcattcattcattcattcattcattc
attcattcattcattcattcattcaatcattcattcattcattcattcat
tcaatcaTTCATTCAttcattcattcattcattcattcattcattcattc
attcattcattcattcattcattcattcattcattcattcattcattcat
tcatt
Run BLAST on NCBI

transcript from alignment at sc0000540:53602..67338+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025587 ID=TCONS_00025587|Name=TCONS_00025587|organism=Clytia hemisphaerica|type=transcript|length=13737bp|location=Sequence derived from alignment at sc0000540:53602..67338+ (Clytia hemisphaerica)
tttgaaactcgatttttaatttcaatttgatATTGCTTTGTTCTAAAAGT
ttatgacattttgaaaaatggaaacTATTTTGGTTAACTGGACATTGAAT
AGGTGATTCGTATCTTGTTTAAAAGTCTTTGGTAAGTATTGGAATCTACT
TAAGTTCTACAGGAGACTCTCGTTTACTAGAATATTTCAATAATTCGAAG
TTACTCCCCCTAGTTCCCTTCAAGAAGAAACCCTCCtaatatactttcta
taatttgaatctctctgtGATTCCCCGTTCGATTTCGCATAAGTGAGAGT
CAcctgtttttcatattttcagtgAACTTACTTATCCTTTCGTTCGTTTT
CTTTTGGTACTCTCTAAAGATATATCCTAAACAGGACTGGGTGGGGGGGG
GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNggaaggggggggggggggggggggggtaggtt
ataTTAGAGTTGGAGAATCCCAGGTTTGTGTGGACCGGACCTCCGAAAAG
CGATCTTTAGAGAGACAAAACTTTGGTGAAAAAGTCACACTTAGAGAGAC
GAATTTTGAACAATATCCTAACCTTAGTGAGATTCTTTTGACACCCTTGG
AGAGACTATTTTGAATATTTGTTGCTTTTGTAACCGTTAGGACTTGGGAA
GGTTAAAAACCGACCCTCAGCATCTATTtttaagccttatgttcttaaat
accgggtgcgccacaaaaaagtttctctctttgaaaccaaatttctagaa
atctaaaaattttaaaagaaccattcctaattcattggaaagaagaaaga
tagacttaaattttgatgggtcgtttattaaattcgattgatttgatcaa
aagttatgctcaattgaataaaaatgttactttcagaaagtgctcgaaaa
cgttaaaaatcgacctatcaaattttcactttaaatttggcagtcgcaat
agcctttacatgattaagagcatttttcattaactaaacagatagatttt
gaaactgaagggtcgaaagggtttaaaatcctcatcaaaattaatttaat
ttagttttaccgGGTAGTTTGTAATATGTATGAGCGACATGGGTTTGACT
TTAATCTTACTCTTAACTTTTAGAATTTAGGAGATTTGGGAAGAACCAAT
TATTACAATGTTGATCCCAAAAGGTGGATTAAAGTCTCAACATGCCATTT
ACGAAGGTGTTCGAAATAAACCAGGTGCTTCTGGGAGCACTGGTGATAGC
CAAGCCATACCTTTTTCTCTCGGTAATTATTATGCACCTATTGAAGACGA
AGCCGACGAATTTGACCGCACGTTTGACGAGAACGCAGGTGAAAATGGAG
GCACGGAACAAAGGTAAGATTCACTTGAGGATCTTTTTATTTGGATCGGT
TTTATTTTCGTTCTTGCATGGAACTTGTTTTATTTGCTAATCCGATACCT
ATCCTGAATGGCAagttaaagtctgtctcaaaataatttgcagttgagac
aaaaaaggctttaacttttgatagaatttgaattaaataGTGGCTCTGTA
CTTAAAGAtaatttgtgagtggaatattattaatcaagtaaaacaattga
aaaaaaaaagaaaaatgaaaaatgaagaagaagaaaatcaatttcttgta
gaaatgtggtgtGATtgccattttcacaggagtgattcttcaatcttaga
tcaacATCACTgtgaaagaattttcaaaaatattcatttaatcaaaagat
atcaaacaaaaactattgctggttgactctataaagtagtaaaatacgac
aaaaaaaacagccttttgtcaaTCAACCAATAAGAAACTTTGCAAACTAG
CTTCCTAGATTGAAACAGCTGTTTCTCACTTTTCAAAATAAgaccatttt
tcaattttcatgctttgtattttcactattttcagctttttgtcgcaaaa
atagttttcattttctttacatCTAAGTTAACTAACGTATTCGTTAAGTC
TTCGTCTGGTACACCCTTGTCTCAAAGCCCCggtgtaatttttaaaaact
tttatcgAATTCCCGATcgggatagaaattcttttgGTTCGGAGCCCAAA
AATTACGATGTgatagttttggagtgcaagtttttccattgaatttgaag
tgggaatgaaatcaaagttaatCCAATAAGGCTGAAATTATGAGGTATTT
TtttcaccggggacgaaattttgggcGAATTTTCCAGGTGGGACTGCAGT
CCAATTGGGACTGCAACACACGGGTGTTCTGGTCTTGATTGCATCATCTC
TTTTTATCTCATTTAGCGCGCCAAGTGGTGCTTTCAATTCAAACCATGTT
TACGATGGAAATCATAAACAGCGGGATCTATCTGCATCTGCACCAAGAAC
AAAAACAGCTGATGGTAAAAAGGAACAACCTATCGTTTCCAAATCCATCG
ATACCGAGGATGATTCAAAACCaggtgaagatgaaaaagaaactaaaaag
aaaagaaaacatagaaaacctAAGAATGATGAAACCGGGCTCGTCTCTTC
TAATGCGGGAGAATTGTCCGTGAAATCAACACCTAAATCTCATCGAAAAC
ACATACCAGAAGGAAGTGGACCTCAAACAAAGCCTAGTACTCCTCTTTCT
ACTCAAACAAAAAGTCGCCAACAACAGAAAAACAATAAACTAATAACTGC
TAAATTTAATGGTGCTAGCTCCTCAACCCTGGAAAGTGATACCACGAATG
GATCCTCTTCGCGCCCTGGTTCTGGAAAATCTGCAAATCCTGGTTCACGA
CCTATGACAGGTGGCCCTTCTAGGCCGATATCAGGTGTTTCTAGACCGGC
CTCTGGTATAACTAGACCGAAGTCTGGCAAATCAAGACCACCCACTGGTT
CTTCGATTGCACAAAACAATAGTGGGGAAATGAGTTTGCAAGCTGGGCAT
TCGAGACCAACATCTGGAAAAACAAGTCAATCAAGACCACAAACTGGTCA
ATCGAGACCAACCTCAGGAAAGATTTCATCGCATGGATTAgcaaacaatc
aaaatggtagcatGAGCGAGGTTAGGCCACGTACAAGTGAACAGGGATCT
GGTACGTCAGCCAATAGACCATTTTCAGCTAGTAGACCACAATCCGGTGT
ATCAAGAAAAAGTATCACATCAATAAAAGGTAAATAAACATTTTAACAGC
ATTTATTCAATGAAATAGAAGCGCAAAGGGCTTACGTTTGATACTCAGTA
CCAGAGTGTCACACTTATCGTTCGTAGTGCACGCATTGtgtgcattgtct
gtttgataaaaatattcccGTACTgaaacctctgcgatgaagtatgattt
ataaatagcaacacttttCTCGTCATCTCCTCTCTTTTATccgcactcca
tcgcagcggttggtttgaaacaattcaaatctgaaaagacaatgacaaca
gaccctctacgacaatgattttttggacctaccccggtggaggtcctata
aattaacctttgtccgttcgttcgttcgtctgttcgtttgttattagctt
tcctcgtgattggacgagccagttttttctgattttttgcacaaagatgc
ataactataaaccctcgaatgtgacggagcccgattttcaaaaaaaaaaa
tttttgggcaaatttgggccaaaaaacagctaaaaaacgggttttttgga
ctttgtgaaaaattaggccgttaattttttctgattttttgcacgaagat
gcataactataatccctcgaatgtgacggagctcgattttcaaaaaaaaa
aatttttgggcaaatttgggccaaaaaacagctaaaaaacgggttttttg
gactttgtgaaaaattaggccgttaattttttctgattttttgcacgaag
atgcataactataatccctcgaatgtgacggagctcgattttcaaaaaaa
aaaatttttgggcaaatttgggccaaaaaacagctaaaaaacgggttttt
tggactttgtgaaaaattaggccgttaattttttctgattttttgcatga
acgtagggtaccatcgtaggtaaaagatggcttaagcgaattgttgcaaa
aaaattttgttggctcaaaaagcgcatgtttatctataagaagcactatt
aataagcatacatcaatattcttagtcaaattactcaattttttatgaga
tttttgctcaggagggcttacttttaaagaatatatgtgtttcgacatga
aattttggttgcttggcgtgtttttatagaataactggccaaattcaata
ttttttataagcacatTATTAATTACTTAGGTATTagcttttctcgagat
tggctcttttattctttatgattttttgcacaaagatgcataactataaa
ccctcgaatgtgacggagctcgattttcaaaaaaaaattttgggcaaatt
tgggccaaaaaacggctaagaaatgggttttttggacttgttattttctg
acttttggcatgaaagtaggtaaaagatggctcaagcagatttttataaa
aaaataatttttcagctcaaaaaacgcatatttatctataagaatcacta
ttaataagcatacatcaatgttcttaaaattactgaattttttgatgaga
tgtttttttgctctcgaagtcttgaatatgaaagaatatttcaagagcgt
gaaattttggtttctaaacgtgtttttttttataaaaaacaaacgactaa
ttttaatagatcgtcactatttgtgttctgaatgattgtttaatggtcac
gctttgtagatatcaattatatatatatgtgttaaatgcataaccaggta
ggtccataaaagtatcacttgtttaaattagccgtagatatcgggtttgt
gtacagactagTAATTTGATTGTCCTTAATAATCTACTCATATTCGTATA
TGTTAGGTTTATTCTTTGATACCATAAATCTATCAATCATTCTTTGTGTT
TTGATCTCGTCTAGACAGTCTTTTATCAAAGCGCGGTGGCTCAGGTGTGC
AGGACGGTGACCTATATGGGAAATCAGATGACGATGATTTAGAGAAATGT
ATGACACCTCCACGATCGGCCTCCAATAATCATGCGCAAAATGTGAACGG
TATGTGTCTTTGTTTcaaattattctttttttccccatttttcttCTCAT
TAACAAATAATCCAACTCTTGTCCACATCTCAAACTTCCCTCTTTCCCGT
TGGGGCCCTAAAAAGATGTCAGCGCTTTTAAGTGAGAAGGAGTTACGGAC
AGAAAATATAGTCCATTCATTTACGGACATCCTTTTCTATCCTCAACCtt
tagttgagctagaatcCGAGAATATGCCTCCGTCTTTTCGAATTACCTTG
CTCCTACGCTTGCACCAATctctaaaaaaaaagaaaacttcttCTTTACC
AAcaaccagaggaatgtaaagagatggaagaACAGCTTCTTCAGAATAAT
Agacaaacggctcgtcatataccaggtcctttgcccttaagggagtttgt
ttCGAGCTAATGGATTTCCTTTGTAgttgctttaaaaaagttgtataatt
agcgtggtatgacgaaattcttttgtttcaggtaAAAGCATGCATAAACT
ttaggggcttatattttggggagATCTCTTTTATACCAAAAGACCTATAT
TTACTTGCTCAGAATTTTCGGGCGATTCTAATGATATAACAGCATCATAA
CCGCATATTTAGATTAAAAGCTAAAGTGcacgaaaataagaaatcaaatc
tgtctttgatgaatttctatcaaattttttagaaataatttggtatcatt
ataatgagaatttttcagactacaagttagtgtaaaatttgttactggat
aaagtttaaaaagtaatggatcaaaaacgaaaaacataaaaCCACTTTTA
TAAACACAGCATATAGAAACCAGCCCTCTTCGCATGGCGAGAcgtttttt
tctgaactttttgTAACGACCAAGTTAAATCTAAAACTAAGGAGTTTTCA
AAAGACACAATCAGACACTTTCTCTATTCCATCCCATTTCTCTGCAACAA
CAGTACAACATTTTACAGACTTCTAGAGATAGACAAGAAACAGACTTCAG
AGTAGTATAGGAAAAACATCATTTATCTTCAAGCAGGAGAAACTACTCAA
CAATCACGTGAAAACAGTCGACAATCTCAACGGAAAGGTGTCGAAAAGCT
TCCTCCACTAACCTCCATTACAACTACAAACACACCTTCTCATCCGTCAC
AAGATGAAAACGCGCGGCCGCTTTCGACCGCTTCACGTCCAGAAGAGGAA
AGCGAGAAATCGAATATTGAGGAATCCGCCACACCTTTAACTGGAAGATC
GACAGGTAAGTGTagtctttataagaacaaactatataggaatataaggc
tttgatgtccataatattgagaacaagttaagaacattttaaggctttat
ggaacCTATgacaaaaatggtcaaattaagaacattttttggcttaaaac
tcaaacaaATAATCACATTTTCTAAAACAAATCAATCAAATataatttaa
agaaataatttttactaTTATCCTACAGCGTACGAAACGTATCGCGATGG
AAGTGATGACGAACTAAAAAGACTTGCTCTTCAAATCGATGACAGTATAT
ATGATCCATTAGCAtcactcgaaaatttaaagaaatcaCGACAACGTGGA
TCTTCaactaaacttcaaaataacgCGCATAGTGCAATCTCTCTAAAGGC
TGGAACTGAATCGAAAACACCAGCTAGCGTAAAtggttcaaaaatttcat
tggGTAAGAAGATTCGTATTTTAGAGACTATAATATTTACTGGTTGGTTA
TATCACTATAACCATTTTTCCAAcgaatgttttagttcgaattgcagaaa
gattcgaataaaaaagaatgagcttttccagaaaaaaaccgcaCAACCCC
TGTTGTGGAGGtccatcattttgtggctggaaatgctgtaaccccctgga
attccaggcaatttcaggtttaaacccctctggaagtCTGATAaattagt
aggatttaaaaggctacccccatggaattccagttatttttgacagattt
ttgtatctccctatggaattccgccacatatcaaacattaccccccttgg
aacggaaatggacctcctcaacagggggtatacggtttttttcagcaaaa
gccCAATTGAGACCAGAGAGAGTCGACTGCAGACTTGCCATAATCATata
gtacaattttttttagtatCGAAACTTTATCTTaaccaatttcttttttt
ttatatttcttgcTTTCTTTCTCTCTCGTAGGCGATGAAGGGAAGATAGA
AACGGAGAAATCAGAAGGTAATGCAAATGACGACGACGACGGAGAAAATA
TATggaatgatgacgtcactaaCAAACCAACCAATGAGTTTCAAGAAGCG
GGAAGTTCTGATCAACCTCGAACTGGTAATACGATAGAGATTCTTTAACT
CAAACCTTTAAACTCGAtatccttaactcgaacaaattctcTCGTCTCTT
cagttactttaatgggataaattctcgcggggattaaatttcgcggttga
gctcatccgcgaaattttaagatttcgcggggattaattttcgcggatgc
cACTATTGGGGGGCAATATTTTCTCGATTTtatgacttttactgtcaaat
catgcatattggttgttgaaatacacattatttgcgcctctttgatgcaa
gtaaccactcaaatagtatttatttgacatattttgagttttgtttagaa
atatttcgcggatgggcctttctcaaatttccaatgggacttattttcac
ggatgacacccaaatccgcgaaacccgcgaaaattaatccccgcgaaaat
ttatcccattaaagtaacagtgctttataaaccttactcgataactcgaa
atttcctcaaCTAAAATATATTTGCGTTTTTTCCGTGCGGGTTCGACTTA
TTGAGACTCGGTATCGAAAAAAGGGCCAATAATTTTTCAAGGACAACTTG
TGTATTTTAGACTTCTTAAGCTTTACAATGACCATGACTAAATCTTAAAA
TGGATTTTCTATCCTTCGAGAGGATCTTTAACATAGTCTTCCTACTCGAA
CCTTTTTTAACTTATACGATTACTACCCTTATTTTTCGAATAATTGGTTA
TTAAACCCTTCAAACCCGAATGACATGTATCCACGTTCAAATTAGCCAAT
ATACCAAGTTCCAGACTAGAGGCTATAGCTCCTGACCTATCGTGAataaa
aatacctttccaacGATAACAAAACTATTGTCTAACTCTCAAGTTACAAC
CTTTTGTGCCAGTTTGAAGTTTTGGATTTCAGaaaaaagttgcgcgctgg
aaaggttgcATATGAATAACGTGAAATATTTATTCTCATGTCAGAATCAC
ACCAAAGAGAAGATTCTCCACAAAAACAAACTCTTCCTTCAACTGAAAAT
GATTTAACAGAGTCTACGCAAGAGCCTGAAAAATCAGATAAACCAAGTCA
AGGATTTCTGGTCAAACCTATTAATGCTGACATAGGATCTCCTATCAAAA
GTGAAGAAGACAAAGCTAAAGAAGGGCCAGGAGATACGCAGGGTGCTGAT
GGAACAAAGGCTACATATGGAGCAGGGGCTAACGGAGCGCAGGCTACTAC
TGATGGTGACAAAATGAGGGTAAGAATGGCTAGTAACATTTTATGTGCTA
TTTGACCGTGACAATTATATCGATTCGCGTAAACGTGAACAATTGGCAGA
AACACTTTGGCAGGAATATGTTATGTCGAATCACCAGATCAGAAGTTCAG
AAATCATGAATTATGAAAATAACGTCACAGTCGCCGCACGTTCTAGCAAA
ATCTGTGAGTTTAGTGGTGTCAGACCCCTCGATTGGTAAATTGTATCTAT
AAAGTTAACGGGATTGAGAGTTTCTGCAGTTGacattctctctaattcga
ttttcaatggTCAGtggattttcttcgaattagagaaagattcgaattac
agagaataTTTTATACCATTTTTCAGTTGAGAGCAGCGATCTTttagttc
aaattatagaaagattcaaattacagAAGCTCGAGTTAAGAGTATTTCTG
TGATGAGGAggttgattatttttttctttctatgtCATAGGCCAACACAG
GAAATGGAGGTGGAGAGGGTGCAACAGGCGGAAGTAAAGAAAACTTTAAT
ATTCCCGTTGGTGACGATGACGATGAAGAAGGAACTGTTAACAATGGAGA
AGATGACGTCACCAAATCTGCATCAGCAGAGACGGAAGATATTTATCGCA
AGAAACCAAGATGGCATCCACCTTGGCAATTGAGACAGGTATTTAGATGC
CATCATAGGTTTAGATTGGCAGCTTCACCTGCATCTTTCTTGCTATGATG
TGTTACATCAAGGGGAAGACATCTCAATAGAATTTACCTATCTCCCTTAA
AGTTAATCAATTGAAAGTCTAAGAAGAAACCTTTATCTCGGTTTTTGGAT
TGACACAGGTTTTACACATTACAGGGTCATAGAACtttgattttgagttt
ttggtTTTGACCTTTTTGGTTTTGACCTTTTTTGAATGCCcttaacattt
ttttacaatgaCAATTCTATTTGCAGGAAATTGTCGCTCATCAAGGAGCA
ATCCCTGAACTAGTGATCGATCCAACTAATCGCTGGTTTGCTACTGGATC
ACAAGATAAGACTATACGGGTAAGAATTCACCCTTTTTCATTTTAGAAGA
ACAAATAAATTCTGGCTCAGGCTGgattgttgtttatttttttttaattt
ttagacttaaatGATCTTACGATGTTGAGAAATCTAAGGCTCAGGATTTT
TTCAGGAggttttaatttgttcttaggttttgccCAGATTTTTACTTATA
CAAAAGAAAACTATATAATTTCGATGTGGGAGCCGTCTAAGAAACTATTT
TCGTAGATTTCAATGAGATTTCATATCTCAACTTTCCTTCACTCATGGCA
ATTGAAGGATTCTACCAGGTCTCAAACTATCTGATTATACATTTGACATT
ATTATTTCCTTGGTTCAAGGCACTGCTTTAGTTGTTGGTGCTGTAGCTTG
CCAAAACATTAGCGTTGTTTCAGCGTCAATCTAAACGTTAGGATGTTATG
AAAGTTATGTGGACAAATtctaacatttcaaaataatacCGTATTATGTA
GTCAGCTCtgggcttttaggccttactctttaGTAGGAGTTTTGTGGTCG
AAACTAAGGAAGATATGGTATAGCCTAAGTATTCTGAAGCTTTTGacaaa
caatttattttatgtttttgttataATTCCAGTTGTGGGACATTAATACT
GGAAAACAGAAACTGGTGATCAAAGCTCACAAACGGGAGATCCGGGCTCT
TGCATTCGGTGCAACAGGTCACCGGAAGCTCTATTCAGCAGGGGATGATC
GGCAACTATTATGTCATGATGTCGAAGTGAATCGGGTAAGCTATAATATT
TCATTTAAGGGGTTGTTTTTGGAATGGAATCTTGAAAATCCATGAAACAT
AATGCTTTTTTCAGAGTGCTTTTTCAAAGAATTATATGAATTTAAGTGAG
CAAACGCAATGCATTTTTACaatgaaatctttttgaataatgttcaaaat
atatttacagcagcaaatgatttcaaattttaaaagccattaaaaaagga
aaactgATAAATTCTAAATGAAACTTCTTATAATTCTAATTATATATGTG
TAGTCCCAAAGAGTAGAAAGATTgttgttaaaattgaaaaattaaaattt
atatgGTAGTAAAGTCAGTCTAAGTTAACGTTTCAGATCgtagaaaattt
gattttgaattttggacAAATCCGCCAAATATTTTTtgcgccaaaatttc
ttcccttaagctAATATTAAAAGGTCGAGAAAAATTCAAATCGGATACCA
TAATCttatttataaaagaaaaatcttttgtccCTTTTCAAAACAGGTCA
TACAGAAATTCAAAGGTCAAACATCTGTCATTTACGATATGGCAATTTAC
CATCCCGAGAATTTATTAATCAGTTGTGGCCGTGATAAGCTATTGAAAGT
GCACGATTTGCGCACAGAGAAGATCGTGCGTTCAATGCGTGGTCACACGA
ACACTGTATCACAAGTTGTCACcaacaattttcataaaatggtAAGTACC
TTATTTTCTCCTTCCCAACCTCTAGTTGAGCCTCAATTATTTTCGTAATT
TTAAGTTTGACATGTTTCAGATGCTCTATGTCCTTTGATTTAGATATCTT
CTTTCTTTAGATCTGTGAATTTATTATGAAGAaactacacacttttttat
aagaatatactatgtaagaatattttaagaatattcttaGATCATATTCC
CCAAACAGTGAAGAATATCcttgatgaaatggaaaaacactaTATTCTTA
TATTAATGTATGCTCCTAGCATGAAGGAATAGagaaatgtaagaaaaaag
caaaacatttCAACCTCCTATTTTAATCTTTTCCCTTCCCCATTTAACAG
GTCATTAGTGCTGGTCACGATTCAACGATCCGGCTCTGGGACATCGGAGA
TGGTCGTTGTATATCAACACTCTATGGTCACAAGAAAAGTGTGCGCGCCT
TGTGCTCAGACCCCGatggaaaaaaattcttatccGCATCCAGTGAGCTG
ATATTAGCTTGGGAGCTTCCATTGGGAGATATGATACAAGAGATCGAGGC
TAAAGATATCGCAATCAATACAATCACATCGAATCAATATGGTGTCGTGG
TTGCCGGAGGTAAGTACATCGTTAATTTCAGTATTGACTTTTCTGACCGT
ACCATTTGCTTGTTTATCCCCTTGTATAACTTATTTTTGGAATTTGAAAG
CTTCATGCTTCAGTTTAAGAACAAACGAATGAAAAGCTATCACTCAGGTA
CATGTATCATTTTATTAATAAGACCTCTCACAATTTtgtgttctttttta
taaattttccaTCGTATTTTATGTATTAAAAGGAGTTTAAAGGAGGCCTA
ACAATGGTAGGCAAACGTGCCAAAACGACCTGCCAGGCTTCAAAATCGCC
AATTGtcacaaatatttttcaatttttgttttattcaaTGATATTTTCAC
CCAATTTTTATTCAGGATCTAACGGTTATATGAATTTATGGGACTTTGAT
ACTGGTTTTCGATTCCAACGCATCAGTCGTGCACGTGTGTACGAATCGCA
TGAAGTACCTATTTGTGTGTTCGCTTCAAAATTCGATAAGACTGGGAAGA
AACTAATTTGTTCAGATGCGTGCAACGTTGTGAAGATCTATGGAGAAGCA
TACACATCTAGGGTAGGTTCATCTGGAGTTGTTGAACGAGTTACAGTGCA
AGGGAGTCAAATGTTGATCAGTCACATTGATAACTCAATGAGATCGTTCA
AGAACAGTGACACACGACTTTAAAATCATTTGGTAATTATTGACCCGAAG
AAAAAATTGGTTTTATTTGTAAGACACCGAAAATGAACTTTTTCTTCTAT
TATGTtcgatgaaaatgaaataaaaatagatattagTTTAGACATTTTTT
GAATTACTGTTCAATCTAAGAAGTTAGATCGCCGCCAAAATTCGAtcctt
caagtcgtcccgtcgtactAGAAGTCGTGCCGTCGCAATTTTCGGTAGTC
GAATCATCCCAAGtttcaagtcgtcccgtcgcactAGAAGTTCGCAGGTC
TTAATTCTTTTAAGTCGAACCATACCAAGTTTCTAAACTTGGTACATGTT
CCAATCATGTACgtttaactgttttcataagtgTTCATGTCATCCATCAG
GTATATTATGGAgatgaaaatataaatataaattcacATTGCACACCACA
CGAACATAACATTATCTccacaatattttgatttttgatatacgaaacaa
taaagttttttttcggaaTAGCCTAGAGTCCAACTCTTTGGGATGAGTCG
ACTGCCGAAATTTGCAACGATTCAAGTTCTGAGGCAACGACTAGACTTAA
AATTTGGAATGTTTCCACTTCCAAAAGATTCCGACTTGCGAACTTCTAAT
GCGACCTGCGGACTTCTAGTACGACGGGATAACTTCTagtacgacgggac
gacttgaaggaTCGAATTTTGGCGGCGATCTAACTTCATATCAATCTTAT
ATTCATTCTTTCACTTCATTTTACATTCATTCACTCTATCATTCTTTCAT
TCATTCACTCTATCATTCTTTCATTCATAGATTTAGCTAAACAATAGATC
GCTCCTTTAATCACTCactttttcattcattcattcattcattcattcat
tcattcattcattcattcattcattcattcattcattcattcattcattc
attcattcattcattcattcattcattcattcattcattcattcattcat
tcattcaatcattcattcattcattcattcattcaatcaTTCATTCAttc
attcattcattcattcattcattcattcattcattcattcattcattcat
tcattcattcattcattcattcattcattcattcatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014359XLOC_014359Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025587-exon-sc0000540-1491911889:53602..53732TCONS_00025587-exon-sc0000540-1491911889:53602..53732Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1510915933:53602..53732TCONS_00025587-exon-sc0000540-1510915933:53602..53732Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1575043694:53602..53732TCONS_00025587-exon-sc0000540-1575043694:53602..53732Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1491911889:54775..55014TCONS_00025587-exon-sc0000540-1491911889:54775..55014Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1510915933:54775..55014TCONS_00025587-exon-sc0000540-1510915933:54775..55014Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1575043694:54775..55014TCONS_00025587-exon-sc0000540-1575043694:54775..55014Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1491911889:55968..56830TCONS_00025587-exon-sc0000540-1491911889:55968..56830Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1510915933:55968..56830TCONS_00025587-exon-sc0000540-1510915933:55968..56830Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1575043694:55968..56830TCONS_00025587-exon-sc0000540-1575043694:55968..56830Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1491911889:58666..58800TCONS_00025587-exon-sc0000540-1491911889:58666..58800Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1510915933:58666..58800TCONS_00025587-exon-sc0000540-1510915933:58666..58800Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1575043694:58666..58800TCONS_00025587-exon-sc0000540-1575043694:58666..58800Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1491911889:59835..60056TCONS_00025587-exon-sc0000540-1491911889:59835..60056Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1510915933:59835..60056TCONS_00025587-exon-sc0000540-1510915933:59835..60056Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1575043694:59835..60056TCONS_00025587-exon-sc0000540-1575043694:59835..60056Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1491911889:60280..60504TCONS_00025587-exon-sc0000540-1491911889:60280..60504Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1510915933:60280..60504TCONS_00025587-exon-sc0000540-1510915933:60280..60504Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1575043694:60280..60504TCONS_00025587-exon-sc0000540-1575043694:60280..60504Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1491911889:61033..61176TCONS_00025587-exon-sc0000540-1491911889:61033..61176Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1510915933:61033..61176TCONS_00025587-exon-sc0000540-1510915933:61033..61176Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1575043694:61033..61176TCONS_00025587-exon-sc0000540-1575043694:61033..61176Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1491911889:62146..62420TCONS_00025587-exon-sc0000540-1491911889:62146..62420Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1510915933:62146..62420TCONS_00025587-exon-sc0000540-1510915933:62146..62420Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1575043694:62146..62420TCONS_00025587-exon-sc0000540-1575043694:62146..62420Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1491911889:62892..63089TCONS_00025587-exon-sc0000540-1491911889:62892..63089Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1510915933:62892..63089TCONS_00025587-exon-sc0000540-1510915933:62892..63089Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1575043694:62892..63089TCONS_00025587-exon-sc0000540-1575043694:62892..63089Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1491911889:63378..63470TCONS_00025587-exon-sc0000540-1491911889:63378..63470Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1510915933:63378..63470TCONS_00025587-exon-sc0000540-1510915933:63378..63470Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1575043694:63378..63470TCONS_00025587-exon-sc0000540-1575043694:63378..63470Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1491911889:64084..64236TCONS_00025587-exon-sc0000540-1491911889:64084..64236Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1510915933:64084..64236TCONS_00025587-exon-sc0000540-1510915933:64084..64236Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1575043694:64084..64236TCONS_00025587-exon-sc0000540-1575043694:64084..64236Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1491911889:64748..64942TCONS_00025587-exon-sc0000540-1491911889:64748..64942Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1510915933:64748..64942TCONS_00025587-exon-sc0000540-1510915933:64748..64942Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1575043694:64748..64942TCONS_00025587-exon-sc0000540-1575043694:64748..64942Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1491911889:65302..65560TCONS_00025587-exon-sc0000540-1491911889:65302..65560Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1510915933:65302..65560TCONS_00025587-exon-sc0000540-1510915933:65302..65560Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1575043694:65302..65560TCONS_00025587-exon-sc0000540-1575043694:65302..65560Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1491911889:65917..67338TCONS_00025587-exon-sc0000540-1491911889:65917..67338Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1510915933:65917..67338TCONS_00025587-exon-sc0000540-1510915933:65917..67338Clytia hemisphaericaexon
TCONS_00025587-exon-sc0000540-1575043694:65917..67338TCONS_00025587-exon-sc0000540-1575043694:65917..67338Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000540supercontigsc0000540:53602..67338 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0369897	0.0616779	0.0866595	0.087978	0.225562	0.159447	0.209559	0.941782	0.46109	1.75616e-09	0.445726	0.654237	0.373672	0.713396	0.000627552	0.392504	0.619261	0.405982	0.22169	0.2015	0.000261877	0.388358	0.000144352	0.971204	0.31479	2.57891	0.271499	0.197436	0.140392	0.146262
Blast
[Close]
BLAST of TCONS_00025587 vs. Swiss-Prot (Human)
Match: PLRG1 (Pleiotropic regulator 1 OS=Homo sapiens GN=PLRG1 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 3.713e-71
Identity = 118/306 (38.56%), Postives = 185/306 (60.46%), Query Frame = 1 
Query: 2398 KPRWHPPWQLRQEIVAHQGAIPELVIDPTNRWFATGSQDKTIRLWDINTGKQKLVIKAHKREIRALAFGATGHRKLYSAGDDRQLLCHDVEVNRVIQKFKGQTSVIYDMAIYHPENLLISCGRDKLLKVHDLRTEKIVRSMRGHTNTVSQVVTNNFHKMVISAGHDSTIRLWDIGDGRCISTLYGHKKSVRALCSDPDGKKFLSASSELILAWELPLGDMIQEIEAKDIAINTITSNQYGVVVAGGSNGYMNLWDFDTGFRFQRISRARVYESHEVPICVFASKFDKTGKKLICSDACNVVKIYGE 3315
            KP+WHPPW+L + I  H G +  + ++P N+WF TGS D+TI++WD+ +GK KL +  H   +R +   +T    L+S G+D+Q+ C D+E N+VI+ + G  S +Y + ++   ++L++C RD   ++ D+RT+  V ++ GHTN V+ V        +I+  HD+TIRLWD+  G+   TL  HKKSVRA+   P    F S S + I  W+ P G  IQ +   +  INT+T N  GV+V+G  NG M+LWD+ TG+ FQR+  A    S +    +FA  FD++  +L+ ++A   +K+Y E
Sbjct:  187 KPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIV-STRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGSFIQNLSGHNAIINTLTVNSDGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACAFDQSESRLLTAEADKTIKVYRE 491
The following BLAST results are available for this feature:
BLAST of TCONS_00025587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLRG13.713e-7138.56Pleiotropic regulator 1 OS=Homo sapiens GN=PLRG1 P... [more]
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