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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025572 ID=TCONS_00025572|Name=TCONS_00025572|organism=Clytia hemisphaerica|type=transcript|length=667bp
AAAACTTCTTTCTTGATCTATTTTTCATCATGATCAAAATTTGTACACTT
GCAATCATTGTTGTTTTTACTTGTCAAGCAAATGCTAAAAATGAGATTCT
GGGCATCCCACCCAATAACCATGGCATTGAGCCTCAAATCACCAAGCTTG
AAGCTTTCAAGCCAAGTGACGTTGGATTGATTGGAAACATTGGTCGGTTG
TCCACAGAATGGTCATTATCTTTCGATTTCATCTGTAGAGAATACCCAAA
TAGTCGGTTAGCACTTTTAGTGGCAACAACTGGAGCAGCTTATCGCTTTT
TTGGAAGTCGTGTGCCAACAATATATCTCCATACGGATAAAGAAATCTCG
ATTTATAGTTATAATTCGGGACCAAGTGAAAAAATCGTAATTTTTACTGT
TAATTTGAATCAAACCTACTCTTTTGAAATCGATCACCGCTATGTAGCAA
ACGGAGAATACCGTTACACTTTTATTGTTAACGGAGTTGAGATATCTTCC
ATCCCAAACCNATACCGTTACACTTTTATTGTTAACGGAGTTGAGATATC
TTCTATCCCAAACCCACAAGGCCGTCAAATACACAATGTCAACTTGTTTG
GTGGAGCAGGAGGAGAAGACGTCGATGTTGAGCTTTCGAACGTCAAACAT
ACAAACTTTCTCTGAAT Run BLAST on NCBI transcript from alignment at sc0000539:51628..60713- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025572 ID=TCONS_00025572|Name=TCONS_00025572|organism=Clytia hemisphaerica|type=transcript|length=9086bp|location=Sequence derived from alignment at sc0000539:51628..60713- (Clytia hemisphaerica)
AAAACTTCTTTCTTGATCTATTTTTCATCATGATCAAAATTTGTACACTT
GCAATCATTGTTGTTTTTACTTGTCAAGCAAATGCTAAAAATGAGGTAAG
GAGCGAAATGTCCGGGCATTTTCATAAATTTTAGGGAGTTCATTTTTTTG
TAAATGATTTAGAAATTCTTATTAGAACTTGCATGAGCGTACGTAATCTT
CATACGCTGTGATACTCACGGTACACTATTAATTTTGGTTATTAAATTGT
AATTACGAAAGTTTTGGTCCATAGCGTAGACAGGGGTGAAGAACGATCGG
AGTTAGAGAGCACATCTTTACGACAAAGCACTTACCTATTCGTGGTCTAA
AAATATAATTATTATGTCTTTAAAATCTGCTCTCCTTAGCAAATATTCCT
TCATCCCCTGTCTACGCTACAGAATTAGTGACATTAATGCTAACATATTT
TCATGGTCTTTTGAAACGATCGTTTTCAGATTCTGGGCATCCCACCCAAT
AACCATGGCATTGAGCCTCAAATCACCAAGCTTGAAGGTAAGAAAAATAG
TTGTTAGAAAAAAATGATATTTTTTGATAAATGATCAGTATGGCTAGCTG
GAAAAAGAATGTGTCAACCTCTCCTACCCAGAGCCACTTGTAACACTTTT
TTAGTTAAATGCTATTTTCTATTCAGTTTAAAAAGCATGTTAAAGAAAAG
GATTGCAGAAATCTGTGCAGATTTCCCTTCAAAAAAGAAGTTGGATTTTT
TGTCATCAATCAATTGACTTGTGATTTCAAGAAATCTTTTCCATTGTTTT
TGCTTTTGTAAAACTTATAATCTCAATTCTCAAAAGAGTGCTCGACCATA
AAAAATTGATTGCTGCAATGACGCAGAGAAATATCGAAAACAAATCAATC
ATATGAAATACAGGGTGTCCTGAAGAAAAAGTATCGAGTTCGAACATGAT
TCTGAGTAGAAGGTTGTTGCGTGTGTTTAACAAAATGTAAGAAAATGCAT
ACCAACATAATAATTGTTTTTACAACAGTCATTAGGATTAAAACTTTTCA
TGACGTTAAGGTTATTGAGAATAGTTTTTTGCAAAAGTTATTTATAAAAA
ATGTCTCATGACAATTAATATGACACAGAGAGAAACTTTGATAAACATTG
CAAATTTAGAACTTTCTTTCTATAGAATTGGTATATGACTTGATACTTTT
TTTCGGGACACCCTGTAGCCTAATTTTCCTTAAAACGGACATTTCAATTT
CTATTTAAGCTTTCAAGCCAAGTGACGTTGGATTGATTGGAAACATTGGT
CGGTTGTCCACAGAATGGTCATTATCTTTTGATTTCATCTGTAGAGAATA
CCCAGATAACTGGTATTCGCTTTTAGTGGCAACCACTGGAGCAACTCATC
ACCGTTTTGGAGGTCGTGTGCCAAGAATATATCTTCATTTGAAAAAAATC
TGGATTTTTAGCCATCTTGGTTCGTCAACAAATTACGGTATCATAAAGTA
TGATGTTAACCTAAATCAAATCTACTCATTTGAAATCAATCACCGCTATG
TAGCAAACGGGGAATACCGTTACACTTTTATTGTTAACGGAGTTGAGATA
TCTTCTATCCCAAACACACCAGGCCGTCAAATACACAATGTCAACTTGTT
TGGTGGAGCAGGAGGGCCAGACTTAGATGTCGAGCTTTCGAACGTCAAAC
ATACAAACTTTCTTTGAATTTCAAGCCTTTGAACAACAAGCTTGAGCACA
CTATTTAGGCTCTAAACTTTAATTGTTCTAGACTTAATTGCTATGTTTCT
TGTGTGTTGTGGAAACTCTACTGTATTCAAAATATTCTAACATGGTGCTT
AAATTTTTTCCAGTCATTGCAGCCAATAAACTTACGTAGCTTCAGCTCAA
GGGGATAGGGGTTTAGAGGTCCTTTCAGGAACCATATCAAAAGAGTGAAA
AGGTTTGATCTACCTTATCGGCCCTTTTTACACGGGCCCTTATTGGCGTT
ATTTTTGGACTCGTGGCGTAATATGGGCCGGCGTTAAAAGGGCCAAGTGT
TGATGGAGAAAACTGCTCCATCGTAATGAACATTTAATTGCCCGTGCTGT
TTATGTTTCTATGTTTTAATTGGTATTCCCTGTGGAGTCTTTTAGTCTTC
ATGTGTCTCTTGAGTCCTCTTTTGTTTAGTGTCCCTTTTGTTTTAAGTGT
CTTTTGTATTCATTTGTAATTCCTCTAGGGAAATTAGGATATGTTTATTA
ACTGTAAATTTTGTAGATAGCAATTAGTTCAACACTGAGGTCGTGTTCAG
ACCAAGGTTTAAAGCAATTAGGTCTACATGTTTCTTTTATATTCCTTTTG
TATTCAACGGCACGCTCCTCATTAGTTAAACCAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNATCGATGATGACAAAAGAAAAGTGATTATA
ATTGAATTCCCATATCAACAAAATACTACTTAAACCTTAAACTTAAACTT
TCAGGTCTGAACACGACCTGAGAGACCTGAGTGAGTGTCTTGTGTGTGAG
AGGTGCGTTTTACTGAAGTTTAATTTACTGTCGTTTTATTTCGGTTCTTT
TTGGTTTTGTTACATTTTAAGTTGGTTTAAGTTCAAGAATTGGTGTTTGC
ATTTTACATTTTCTGTTCTCCATTTTCTGTTTGGTTTCCTTAGGTTAGGT
TCATTTTTGTCCATTAAGGCTGAGATATTTCGACCAGTCAAATTATTCAA
AACATCTTCGTTCTCTCCACTCACACCAAGATTTAGCAATTTTAACCTAA
AAGCGGCGTTAATTCTTTATCATTATTTCTCAATTTAAAGGATTTTAGGT
ATGATTCGAAGACGAAAATTATCCATTGTTTTTACTCCATATTTAAAACT
TCAGTGAAATATTTAATATATATTTAAAAATCAGTGATTTTCGATGGGAT
TTTCAACAGTTTACTACTGAAAAATGACATTTTAACGTAAATTTTAGTCA
TTATTTACTAATTTGAAGCATAAGTAGCCATTTTTATAAGTTTTGGCGTT
ATTTACGGCCCTAATTGGCGTAAGCCCAGAATTAGGCTGTGGCGGAATAA
AGACTGGCGTTAAATTAGGGCCGGCGTGAAAAGGGCCGATAAGGTATCTT
GAACTAATTATCTTTTTAAGATAAATGACTTTTTTGAAGTGTCTCTAGCG
TTGGGTTTCCGAAAAACTGCAAGAAAACAAAAAAAGCGCTAGGTTTAATC
TAGACGATGCTATCGTCTGTTTAAAGTAAATGCGAGAAAGAGTTAGGGCG
TCAGGGCGGTTTAAGGGAAAAAATTGACGGCAGAGAGTTTGGAACAAACG
CACTGTAAACACCTCCGCCACTGCTTACTCCACCCGAATTTATCACGCCT
CTCCTAAACTATTCCCTTTTTTAGTGATCTTGTGTAGACGATAGGATCGT
CTAGGTTTAATCTAGCATTCATAATATTCTGTTTTACATATCTTGTAAAT
ATTGATTTGTTTCTTACAAATTTGGAATATGAATTTTAATCCAGTCTAAA
TAAAAATTGACTAGTATATAACTAGCATAATATTTACATAAGGTGTGAAC
AAAACTTGCTACTCCTTCTAAGCGCCCATCGTCCATCAGGGTGAGAACAA
TTAAAATCACGTGTCCAAAACAAACTTGTAAAACAATTGAAACAATCTAA
ATCAGCCATAACTGTTTTTATTTTTTATTTTGACATGTGACATTTTTTGT
ATTGATATTGTATTCCGCTGTATACGATTTGTTTACAAATTTCGTCAGTA
CTTTGATGTCCCTTTAAGTTCTGGTGTCATGCTGATGTTGTTGTTATTTA
GTTGAAAAAAATCTCAATAGACGATATCGGCTTTCTGAATTCTCCCCGAA
TGATTACCCATGATGCATTGTTAGGGTTTGGGTTATCGTCCGTGAATTTT
TTTGCGCAATGCATCATGGGTAGTCATTCGGGGAGAATTCGGTAAAGCCG
ATATCGTCTATTCGAAAATGATTATAGCTTTTGCAAAGCATAAAAGAAAT
ATCACTCCATAAGACTAAATCTGCTACACAGTTTTTTCCATAAAAACAAG
AACTATATAAGAATATAATGCTTCGATGACAAATATATTAAGAACAAATT
ATCAAGAACATTTTAAGTCTTTCCAGACCCTAAAACAGCCAATTTCGTAG
GAAAATAAAGAAAAAAACTAACGAAAAAGTGAAGATAATAACATGTTGAG
AGCATTTTTAGTCTTAAAACTAAAAAAGTTAAGAACATCCGAAGGCTTCA
AAAGTTTTGGATATCCTTATAAAAAAAGGTGTATCAAATCAATAAACCGG
ATTGAATAATCGCCATAAGTTTCAATGTAGCTGAATTTCCAGTTGAATAA
TTTATTGGTATTTTTTCCTCGTCAGCAGGCTTTCACTCGGAGAAAGCATT
GAGTTTAAATCCCAAAGGGCTAGAGTAGAATCTCTAACCTTTCCCAGGCA
AGAAAAAGTGACGCCACTTATTTCCTATCCAGAACGAACCTAAAACGCGC
CGTAGTCATGACGACAGATTCCTTTCCTTTGTTTTCGAGGACTACAATCA
TGATGTTCAAAATCCATTGAGAATTTAGCTTACTTGCTCGTTTTTCGAAA
TTTGAAGTTCGCGGCAAGAGTTCGCTTTTTGATTAATTGATAAATTTACT
CGAGTATTTAAATCCGAGAGGGGTTTTTAGACTACTAGGCTATATTTTGA
ACCCTATTGGATCATTCTCGAACTTTTGGATCCGTAGATCGTAAGCTCCT
AAGCGCTAAAACTCAGAGTGAAAACTCTACTCTTCCAACCTAATTTAGAG
CGCTTCCAAACTGTTTGTGGTTAAAAGATTTCGTAGGGATTTCCCTTTTT
TCTCAAATATTACGACTGTGATTGTACATTTTTTAAATCTGGCGATAGAT
TTTAGTTTCGCAATCCAGCGTTTGTGTAAAAGCCACGCACGAGCGCTCAG
GATGGGAATAAAGTAGGGTCATTTCCCATCCTGGAGTCTTGAGTCTAGCC
CTTCGGGCTTGGAAGTCAATGGGAAGGAACTTGTGAATCAAACTGACGCT
CCGTTCCCTGAAGGAGCTTATTTTAAAACTCGGCACGACTGAGCAAAAAT
TGTCTTTTGGTGATGACTAAAAGTATGTAATAATATATTAAAGTTATCAT
GACATTGTCATCAAAAAATTGAAAAATTTTAAAATGAATAATCGTTAAAA
AATTCCAATTTATAGTAAAAACGGAAAATTGTTATTTTGATTTTGAAAAC
TTCTTTCTTGATCTAATTTTCATCATGATCAAAATTTGTACACTTGCAAT
TATTGTAGTTTTTTCCTGTCAAGCAAATGCTGAATGTAAGGTGAGGAAGG
ATAATCCAAACTTGTACACAACGTTGTATCGACGTTCATCTAACGCTACT
TGGACGTTGTGAACATGAACAAACGTTGTCCATGATTAGTACAGGGTCGT
CCGGAAAAATAATACCACTTCTATAGAAATAAAGTTCTTGTGTGTGTTTC
ACTAAATTTGCAATGTTTATCTCTGTGTCATATTTATTGTCATGATTTAT
TGTCATCTTTTATGAATAACTTTTACAAAAAAAATTCTCAATATCTTTAA
TGTTTTGATTTTATTCACATCTGACGATTGCTAGGCCCGGGGGGGGGGGG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCGGGTTGCTAGGAG
AGCATGAAACTCGGAGTTATGTACAATTTTTAACTTGTCAAGGAAATATA
TTATTTAACTTTAACGTCATGAAAATCGAAAGAAAGTTAAATATTTTTAA
TCATGACTGTTGTAAAAACAATTTTTGTATTGTTATATATTTTCTTACAT
TTTGTTAAACAAACGCAACAACCTTCTACTCAGAATCATTTTTCAACACC
GTACTTTTTTTCTGGACACCCTGTATAGTCAACCTCGTTTCCAGGCCCTA
CCAATTCTTTTTATGAGAAACTATCCAATAAAAAACATCATTATTTCTAG
CCGCCGCTTCAGTAGCCTTTTTCCCATTTTGAGAAAGCCAAATACATTAA
CCAGCACACTCACTCACCCACTCCAGACAATGGGAGTGTTTTCCACTGAC
TGCTTAAGCTAACAGGATTAATGTAAACTTTTGATAAAACGATGAATAGC
CATAAAACTATTTATATAATTTTTGGATAAAAAGAGATGGTTGCACATTA
TTATTTTCTTTTCAGAAAAATATTCTATTCCCAAAACAACACAGAGGAAA
AGCCGTTAAATCTTTTCCATTTTATATGTCGCAATTTTCGGGTAAATAGA
GAGAAAATACCCCAAAATTTTCGTACTCGTTTCTCTTGCCTAATTTTTAA
TAAAGATATTTATTTTTTATAGGACCTCCAAAATAAAAACGTTATAATAT
ATGTCTCCCCAGTCTGCCCAAATTTTAGTCGTGCAATTTCATGCACTTTT
GATATGCTTTTTCTTAGATTTTGGGCATTCCTCCAAATAACCATGGCATT
GAGCCTCAAATCACCAGACTTGAAGGTAAGAACAAAGAACTACTGCCAAA
AAGTAGTAAGAACAAAATTATATTCAAACTTTGTACCACAATTGATTGAT
TATGGTTGGCTTGAAATATGCTTCAAATTGGAACCTTCATATATAATTTT
GAGTGCAACGACTGCCTCTTTTTGAAACCGTTACCAAGGTGATCAAATGC
CTCAAGTCTTTAAATGTTACTTCATTCATGAACTCCACTCAGAATCGTTT
CCTACAGTATGAAATATTTCGAAATCAAGATAACCGTTGCTCTTGACGTA
ATCTATGAAAATATCTATAAGAGAGAGGTGCTCTTACTGGAAAATGCTAA
GACAAATCACTACCTAAGGAATAAACCCAAAGCCGAAGAAAACTTGCAAA
CGGTTTTTTTTGCCAAAAAGAGTTTACAGTCGGTAGAGTTTGCCAGTCCA
GTTTGCCAGTCTGTTTCTTTGAAACCCTCCCGCCGATTCTTTCTCTGTAT
ACCACCATAACGTCAGACTGCAATATTTTCCCACCTTAACTATGACTGTA
ACGAACGCTAGCATCTTCTATGTCCTTACATGCGCAACCTTTAAAAGACT
TTTTGTTCACTTTATTACCTGCAGCAGTTTTGAATGGGTTCCTCCCAGTG
GTTGGCTGAATGAGCTTTTTTGGTTGCACGCATGCGTGAATTGAAAAAAA
AAACTTAATTAAATGAACGTGAAAATCCACTTTTTTAATTGTGTGAATGC
GTGAATCTGTACTGTTTTTAGTATAAATACGTGAAATTTTCCACCGATTA
TGAACAAATTTTCCCGATTTTTCCCAAAAAGTTTCCCGATTTTCTAAAAA
AATCTGGTTTGCGTTGTAGCCTATCTCTATCCCAACATGCGACTTTTTAT
CACTTTGCGAGCAAAATTACCATGAAAATGCATTTCTGAAACAACATTTA
TTTCCTTGAATTGCAGTCTAGAAGCTTTGCATTCTTCTTTATTTGACACG
AATATTTCAATTTCCATTTAAGCGTTCAAGCCAAGTGAGGTTGGATTAAT
AGGGAACATTGGTCGGTTGTCCACAGAATGGTCATTATCTTTCGATTTCA
TCTGTAGAGAATACCCAAATAGTCGGTTAGCACTTTTAGTGGCAACAACT
GGAGCAGCTTATCGCTTTTTTGGAAGTCGTGTGCCAACAATATATCTCCA
TACGGATAAAGAAATCTCGATTTATAGTTATAATTCGGGACCAAGTGAAA
AAATCGTAATTTTTACTGTTAATTTGAATCAAACCTACTCTTTTGAAATC
GATCACCGCTATGTAGCAAACGGAGAATACCGTTACACTTTTATTGTTAA
CGGAGTTGAGATATCTTCCATCCCAAACCNATACCGTTACACTTTTATTG
TTAACGGAGTTGAGATATCTTCTATCCCAAACCCACAAGGCCGTCAAATA
CACAATGTCAACTTGTTTGGTGGAGCAGGAGGAGAAGACGTCGATGTTGA
GCTTTCGAACGTCAAACATACAAACTTTCTCTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025572-exon-sc0000539-1575043694:60619..60713 | TCONS_00025572-exon-sc0000539-1575043694:60619..60713 | Clytia hemisphaerica | exon |
| TCONS_00025572-exon-sc0000539-1575043694:60177..60234 | TCONS_00025572-exon-sc0000539-1575043694:60177..60234 | Clytia hemisphaerica | exon |
| TCONS_00025572-exon-sc0000539-1575043694:59420..59454 | TCONS_00025572-exon-sc0000539-1575043694:59420..59454 | Clytia hemisphaerica | exon |
| TCONS_00025572-exon-sc0000539-1575043694:51628..52106 | TCONS_00025572-exon-sc0000539-1575043694:51628..52106 | Clytia hemisphaerica | exon |
| TCONS_00025572-exon-sc0000539-1510915933:60619..60713 | TCONS_00025572-exon-sc0000539-1510915933:60619..60713 | Clytia hemisphaerica | exon |
| TCONS_00025572-exon-sc0000539-1510915933:60177..60234 | TCONS_00025572-exon-sc0000539-1510915933:60177..60234 | Clytia hemisphaerica | exon |
| TCONS_00025572-exon-sc0000539-1510915933:59420..59454 | TCONS_00025572-exon-sc0000539-1510915933:59420..59454 | Clytia hemisphaerica | exon |
| TCONS_00025572-exon-sc0000539-1510915933:51628..52106 | TCONS_00025572-exon-sc0000539-1510915933:51628..52106 | Clytia hemisphaerica | exon |
| TCONS_00025572-exon-sc0000539-1491911889:60619..60713 | TCONS_00025572-exon-sc0000539-1491911889:60619..60713 | Clytia hemisphaerica | exon |
| TCONS_00025572-exon-sc0000539-1491911889:60177..60234 | TCONS_00025572-exon-sc0000539-1491911889:60177..60234 | Clytia hemisphaerica | exon |
| TCONS_00025572-exon-sc0000539-1491911889:59420..59454 | TCONS_00025572-exon-sc0000539-1491911889:59420..59454 | Clytia hemisphaerica | exon |
| TCONS_00025572-exon-sc0000539-1491911889:51628..52106 | TCONS_00025572-exon-sc0000539-1491911889:51628..52106 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000539 | supercontig | sc0000539:51628..60713 - |
Blast
The following BLAST results are available for this feature:
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