|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025535 ID=TCONS_00025535|Name=TCONS_00025535|organism=Clytia hemisphaerica|type=transcript|length=1149bp
NNaaaataaaaaTTTTAAAATGTGATTAAAAATTTGAGCAAGTTattcaa
aaagattcaaatcGAAATTATTGATACTGGACTTGATCACTGTTCCTTTG
GCTCGGTCCCTGATTGCTTAAAGTTGAACTTCAATTCAGGTATATTTTGC
ATTAATTTTACCTTGACTTTCCTTTGTAATGaaagaggccccccagcggt
ttgcttGATGTCGTGATTAGAGATCTTtatggcgtgatggcgtgatcaag
attttggcgtgacacgtgatagggcaaaaatttgaggcgtgatgcgtgat
ttgggctatttttcgcttttttttgcgtgatgacaaattttagctatctt
cgtgatgcgtgatggagaaaatttttttgcatgatTGCGTGATTgtgggt
gccgctgggggggggctcATGACACTGGTTTTGGATAAAACTTTTCATTC
TGATGTGCCTAATAAGTACCCCTAAATAGCTAAATAGCCAGGTCTTTGAT
TACCTTATTTTTGGTAGAGGGGTACAATTTTCAGTTCCCCACAATAAAGT
CCTCATTTATTACAGACACTGAGTTTATGGAAAGGGATTTATATCTGATG
TTGACAACATTACAATAGTCATAGGGAAGGTTGTTTATGCAAGGAAATGA
TATCAATTTTTGGTTCTTATaacaaactttttataaaacggTACATCTGA
AAGACGTTTAAAAGATGCTTTATGGACGTTGATAGTTTTAAAATCCAGGG
ATAACCTTGGATATTCAAGGAGaactgatatcaatttttgGTTCTTATAA
CAAACTTTTTATAAATCGGTACATCTTAAAGACGTTTAAAAGATGCTTTA
TGGACGTTAATGGTTTTAGAATCCAGGGATAACCTTGGATATCCAAGGAT
AACACTGtttaaaatcgaaaataaaCCTGGTACAATCTGGTACAACCATG
GACTTTAAATCAAAGGATAACCTTGGATAACCCGGGATTAAAAATATGGA
TATCCCATTTCAAAAAGTCCTTTATTATCCTTAATTGTACTTGATTTCTT
GTACTTGATATCCAAGGATTTTTGCTCCCAAGGTGTACTTAATTTTGTAC
TTGATTTGTCCAAAGTATATCCTTGGATTATCCTTGATTTTGATACCAG Run BLAST on NCBI transcript from alignment at sc0000539:9881..11029+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025535 ID=TCONS_00025535|Name=TCONS_00025535|organism=Clytia hemisphaerica|type=transcript|length=1149bp|location=Sequence derived from alignment at sc0000539:9881..11029+ (Clytia hemisphaerica)
NNaaaataaaaaTTTTAAAATGTGATTAAAAATTTGAGCAAGTTattcaa
aaagattcaaatcGAAATTATTGATACTGGACTTGATCACTGTTCCTTTG
GCTCGGTCCCTGATTGCTTAAAGTTGAACTTCAATTCAGGTATATTTTGC
ATTAATTTTACCTTGACTTTCCTTTGTAATGaaagaggccccccagcggt
ttgcttGATGTCGTGATTAGAGATCTTtatggcgtgatggcgtgatcaag
attttggcgtgacacgtgatagggcaaaaatttgaggcgtgatgcgtgat
ttgggctatttttcgcttttttttgcgtgatgacaaattttagctatctt
cgtgatgcgtgatggagaaaatttttttgcatgatTGCGTGATTgtgggt
gccgctgggggggggctcATGACACTGGTTTTGGATAAAACTTTTCATTC
TGATGTGCCTAATAAGTACCCCTAAATAGCTAAATAGCCAGGTCTTTGAT
TACCTTATTTTTGGTAGAGGGGTACAATTTTCAGTTCCCCACAATAAAGT
CCTCATTTATTACAGACACTGAGTTTATGGAAAGGGATTTATATCTGATG
TTGACAACATTACAATAGTCATAGGGAAGGTTGTTTATGCAAGGAAATGA
TATCAATTTTTGGTTCTTATaacaaactttttataaaacggTACATCTGA
AAGACGTTTAAAAGATGCTTTATGGACGTTGATAGTTTTAAAATCCAGGG
ATAACCTTGGATATTCAAGGAGaactgatatcaatttttgGTTCTTATAA
CAAACTTTTTATAAATCGGTACATCTTAAAGACGTTTAAAAGATGCTTTA
TGGACGTTAATGGTTTTAGAATCCAGGGATAACCTTGGATATCCAAGGAT
AACACTGtttaaaatcgaaaataaaCCTGGTACAATCTGGTACAACCATG
GACTTTAAATCAAAGGATAACCTTGGATAACCCGGGATTAAAAATATGGA
TATCCCATTTCAAAAAGTCCTTTATTATCCTTAATTGTACTTGATTTCTT
GTACTTGATATCCAAGGATTTTTGCTCCCAAGGTGTACTTAATTTTGTAC
TTGATTTGTCCAAAGTATATCCTTGGATTATCCTTGATTTTGATACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025535-exon-sc0000539-1491911889:9881..11029 | TCONS_00025535-exon-sc0000539-1491911889:9881..11029 | Clytia hemisphaerica | exon |
| TCONS_00025535-exon-sc0000539-1510915933:9881..11029 | TCONS_00025535-exon-sc0000539-1510915933:9881..11029 | Clytia hemisphaerica | exon |
| TCONS_00025535-exon-sc0000539-1575043694:9881..11029 | TCONS_00025535-exon-sc0000539-1575043694:9881..11029 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000539 | supercontig | sc0000539:9881..11029 + |
Blast
The following BLAST results are available for this feature:
|
