TCONS_00025534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025534
Unique NameTCONS_00025534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025534 ID=TCONS_00025534|Name=TCONS_00025534|organism=Clytia hemisphaerica|type=transcript|length=1598bp
CCAAAAAAGCCCATTCACACATTCACGCAGACCGCTGGGGGAGCCCTCTA
ATAGCAGCTCTGTCAGAGGCGTAGCCAGGAGTTGAAGGGTATGTTTTTTC
ATTGCAGATAATAAACGAGCTGCTGAAGCTACACTCCCAAAAGTGGATAT
CTTTATTGAAAAAGCCATTGATGGAAAAAGGGCTAGAAAGAAGAAATCAG
AAAACATGTACGAATATGATGATGAGGACGAGTCAGCGAAAGAAAAAAAA
CAGAAATTAAGTGAGAATAAAGAAAATAACACTGGAATTCTGAAGACTGT
TACAAGCAAAAAGAAAAATGGCAATCAACAAGTATCAGTGAAAGCAGATG
ATAAACTTGGAAAGAAAAAAAAGGTGAACGTTAATGCAGATGCTCAGAAA
GCAACACACCAAGATTTTATGACTGAAATAAAAACAATGAAAGAAAAATT
GAATGCTGCTAAAATACCAATCGAACAAACCAGTGTTAACTCTGATACAG
AAAACGACGAGGAGCTACTGAATGTCAGCACATTGTCTCCCAACAAAGTG
TCATGTGAGAGTAGCGATCATGTAGCTGAACCTGCCTCACCAAAGAGAAC
GACAATGACTAGACAGACACAAGGTCATGAAAAGAATCCTGATCAAGAAG
TAGATGGACATTACGGCCAACTGTCAAAGGAGCAAATTaaaaaagtcaaa
gagATTGGTAAAACTTGTGTGAATTACAAGGGTGGAATAAACCGGATGAT
GGATGTTGTGTTCACTGAACAAGAAATGATTTCTTGTACACCTTGTGGTC
AGGCaagtcaaaaaaataaagaggCGAGAGGGGCATTACCATCTGATGGA
ATGAATATAATTTATAAATACATCAGAAAAAGATTTCCTGACGAATTTCC
GGATGGGGAAAATAATTCCAAAATGCACAGTCAGATGACAAATCATTTGA
AGGTTGTGGTTAGAGCCTTCAATTCAAGAATGAGGccgtcaaaaaattga
gaattattttcagttgttttttgagctattttcatttttaggttTACACT
GTTCTTTTGGTATGACAtaagtaaattttgaaaatttaagagCTCTTGTG
AAAAAATGATTCTTAAAACTATATTACTCTACCAGAGACtactttttctt
attattttaatCATTAGAAGCCTATTCCTGCCACCCAATATTCATTTTGT
TACTGCAGAGTTATCTATTCTATATataaacttttcaatttcacaaCGTT
TTAACTGGTCAATGTaatatttaaaaattacaatCACCCAACATGATACA
GTAATATTTTATATTTCCTATTTTATTGATGAAAAACCCTTACTATAGGT
CCATTTTGCTGTAAATATTTTGTTCTACATCTTGTTTTTAGTACTCACTT
TTTGATTGCCCTtatatttctttatatttttttattctatacatatttct
ttcactttcattctcttgttatatatttttcctattttaatttttataac
tATTTCTTTTATCTATTTAgaattgttttttaattttagcatCATATCTG
ttttaacaaacttttaaaGAATCTGGTACTAGTATTTTGTTGCTTTAA
Run BLAST on NCBI

transcript from alignment at sc0000539:837..6026+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025534 ID=TCONS_00025534|Name=TCONS_00025534|organism=Clytia hemisphaerica|type=transcript|length=5190bp|location=Sequence derived from alignment at sc0000539:837..6026+ (Clytia hemisphaerica)
CCAAAAAAGCCCATTCACACATTCACGCAGACCGCTGGGGGAGCCCTCTA
ATAGCAGCTCTGTCAGAGGCGTAGCCAGGAGTTGAAGGGTATGTTTTTTC
ATTGCAGATAATAAACGAGCTGCTGAAGCTACACTCCCAAAAGTGGATAT
CTTTATTGAAAAAGCCATTGATGGAAAAAGGGCTAGAAAGAAGAAATCAG
AAAACATGTACGAATATGGTAAGATTATTTGAGATGTGCAATAGAAATAA
AGAGATTAGCAGGGAAAAATCTTAATAAAAAGATTTTGTGCTATGTGTTA
TGACTCAAATTTTCTTTTAAGCTGGACTTCAGTGTTGCATTTGCTCCTGC
ACTTTTTATTTCTTTTTTTCTACTCAGATGATGAGGACGAGTCAGCGAAA
GAAAAAAAACAGAAATTAGTAAGAAAATATTCTTCAATAGAAATTATGTT
AACGTACAAATTATTGAATTTCATGCCAAGATTCATTTTCTGAAACTAAG
GTAAGTCCCAGTAAATTTGCTATTTTTGTGATCAATATCAGGGTTTTCAG
GTCCATATATATGATCTCATTATGATATCCATAATAATTGTTTCCAAAAT
TAAGTAATCATGATCACAATCCTTCTTGAATATTTAGATTTTTTAATTTT
CGCTCAAGCCAAATTTCTGTTTTTACGCGTCTATATTTTAATAATAGCAT
CTTTTTTATCACAGAGTGAGAATAAAGAAAATAACACTGGAATTCTGAAG
ACTGTTACAAGCAAAAAGAAAAATGTAAGAAAACAAGCTTAAATTTTGTT
TTGTTTAAGAAATGAATTAATAGCAGACCTATGGCCATGAACAAAGCCTG
CATGTGCTAAAGTAGCACTCTATGAAAAATATATAACAGATTATGACGTG
CTATTAGCACTCCTAAAGAGGGTTTTGTTCAAACTTGTATATTTTAGGAG
TGATATTTTAGCAGTTGCAAATCATTTTACGTGTGTGTCAGCGTGTGCGA
GAGCATGCCAGGTCAGGCCTGTAATAGAAATATACTGATGAACAGTAAGA
TTTTTATACTTAATAAATTTATGAAACCCACATTTTGCACTTCATAGTTT
CAAATCATTCATTCATTTTTTCTAGGGCAATCAACAAGTATCAGTGAAAG
CAGATGATAAACTTGGAAAGAAAAAAAAGGTAACATTGTAAAACTACATT
CAGAGTTTGGTATAAAAAAACAAAACACCAGTTTTGAATTATTGAAGCAG
TCATTCATTTATTTCCATTTTACAAGGTGAACGTTAATGCAGATGCTCAG
AAAGCAACACACCAAGATTTTATGACTGAAATAAAAACAGTAAATACATT
TTGTAAATTATCTTTGTATAGCTCAGGTTTTGTTCAAACTTTTATAGTTG
AAAGTAGCCTCTTTTTTGAGTTTTCTCCCCTTTTTTTATAGCATAAAAAG
GTATTTTGTTTCTTCGAATAAGGGAATTATACTTGAACAATAGATGTATT
TTGTTTTTGATTGGAATTTATCCTAAAGGTTTGTTTTTTTTACTTAAAGA
TATGCATGATTAAAGGACTAGGAGTTTACTTTTTTTTACAGATGAAAGAA
AAATTGAATGCTGCTAAAATACCAATCGAACAAACCAGTGAGTTTTACTA
TTTGTTTTGAAAGTGCAGTTGATGCTCTCTGATTCGATCTTTAAGGGGaa
ttaataaaaatatactttGTCAGATGGTTTTAAACTCAAAACTGCTTGAA
GGTTTTCTATATGAATATTATATACACAAGTATGTAACAAATGCATCCAA
AAAACTTTACACAACAGTGCATTCACAAGATGATAGACAATTAGTATGCA
TgagttaccttaagggaataaattaatgcgagaaTTAATTTATGCGGAAT
AAGTTAATGCGAGTAACCCCCAAAAAATTATATGTTTTGCGGAACAAATT
AATGCGAAAAGGCCCATTTTAAGGAGTTTTGCGGAATTAGTTTGGGCGCT
TTTTAAGTAAGAGAATAATGTCAAATATGGGAATACAAGTGCTTAATTTA
TGCACTGGAGTCCAAAAAATGAATATTTGGGATTTACACCTCCAAAAtca
gcaatattttagaaaaaaatgcgGAATTTATTAATGCGAATGGCGAATGG
ccgaaattttttaatttttgcggaatttcaaATTTGCATTAATTAATTCC
GTATTAATtcattcccttaaggtaacatATAACAATAAAATAATACAATA
ACATAACATGACATCACTATGACAACATTGAGACACTTTCAAAACATGAC
AATTGACAATGCTACCGACAACTTAATACATCACAACAAAAACGTGCAAT
TTACAGACCAACATTTAACATTGATAATTTACAGAATAAAGTCACAATAT
ATAAACAAATGCTACTATAATGTACTAGACTTAATTAATGATGGCTTGGA
TACTGAAAAGACGTGCAAaagctgcaaacaaaaaaagagACTGGAAACAA
AGGAAAACACTGACCAAACAGAAAAACACTGACCAAACAGAAAAACACTG
ACCATACAGAAAAACACTGACCATACAGAAAAACACTGACCAAATAGAAA
AACACAGAAAGAgctgaaaaccccaaaaataggGAAAACCCCATACATCC
TGAGGAGAACCATAACAGTCACTGTGTCTCAGCCACtacaaaaatagcta
tttcNctgaaaaccccaaaaataggGAAAACCCCAAACATCCTGAGGAGA
ACCATAACAGTCACTGTGTCTCAGCCACTACAAAAATAGCTATTTTTTTT
AAGGTGTTAACTCTGATACAGAAAACGACGAGGAGCTACTGAATGTCAGC
ACATTGTCTCCCAACAAAGTGTCATGTGAGAGTAGCGATCATGTAGCTGA
ACCTGCCTCACCAAAGAGAACGACAATGACTAGACAGACACAAGGTCATG
AAAAGGTACAACATAACCTGATACCTTCGATGACCAAAAGTCCTGAAAAG
ACAAACAATACCATTCTACAGCCCATTCGAAGGACTTCGCCAAGAAAAAA
AGCCCATAATAGCCTACAGACACTATCTTTTCTATCATTGACCAAAGGTC
CTGAAAAGGCACAACATAACCTGATACCTTCGATGACCAAAAGTCCTGAA
AAGACAAACTTTACCACTCTACAGCCCATTCAAAGGACTTCGCCAAGAAA
AAAAGCCCATAATAGCCTACCAAGGCCTTCAATTAACTTAAATAATTTTG
AACAACAACCTTGGCAACAGCAAACACAAAAGCAAGTTACAAACAGCACT
CCAACGTCTAATAATTTTTTGGGAATAAACCCACTTGGTTTTTTAGAGAG
TAGTACCAGTAGTACTGGGTCTCCTGGCTTTGTTAATGAATTAAACAACA
ATTATGGATATTGGAATAATTCAAATAACAATACACCATCAAATTCTGTT
ACCAATAACCAAAGAATGTATAATTCTCAATCCTTGACATCTTTGTGCGA
GATTGTCAACGGTCTTCAAGCAAGGGTCAAGGCTCTTGAAGATGAAAATT
CAAACCTGAAGACAGTTGTACATATGTTGATGGAGAAAAGCCAAAACGAT
AACAGACCAAATGTAAATAGCCACTTTAATCTTGTTATTTTGTTacattt
gtctcaaaatctcaaaaaattttcccataTTGCACTTGGTAATGTGTaac
aattattgttatttaagAATCCTGATCAAGAAGTAGATGGACATTACGGC
CAACTGTCAAAGGAGCAAATTGTAAgttttaaaaaacataaaattatttc
acagcaaattttacaatttggAAATAGTTGATAGTCAACATTAACATAAT
TATTATTGACATTTACAGAAATGTTTCTAATTATAACGTTTTTAACAAAT
CTTTGTCAACTTGTCATTctatttatttagaaaaaagtcaaagagATTGG
TAAAACTTGTGTGAATTACAAGGGTGGAATAAACCGGATGATGGATGTTG
TGTTCACTGAACAAGAAATGATTTCTTGTACACCTTGTGGTCAGGCaagt
caaaaaaataaagaggCGAGAGGGGCATTACCATCTGATGGAATGAATAT
AATTTATAGTAAgagtagtttttttttaatttgagtgaagatctgttttt
ttttaagcacAAGAAAGATATGATTTTGTGAATTAGAATAACTTGAATAA
ACACACATCACTTTATATGGCTTCCTGANTTTAAGCACAAGAAAGATATG
ATTTTGTGAATTAGAATAACTTGAATAAACACACACCACTTTATATGGCT
TCCTGTgtgtatctttttttttaatttagcaaCTAGAATATCTGTTGGAC
AGCGcaatttctatttatttttggCCTTACTCCTGCTTACTCTTGTGCTT
TTGTGTAGATTATAATAAAGATTGTTATATTATATTAATTCAAAGACTTT
ATTTATAGAATACATCAGAAAAAGATTTCCTGACGAATTTCCGGATGGGG
AAAATAATTCCAAAATGCACAGTCAGATGACAAATCATTTGAAGGTTGTG
GTTAGAGCCTTCAATTCAAGAATGAGGccgtcaaaaaattgagaattatt
ttcagttgttttttgagctattttcatttttaggttTACACTGTTCTTTT
GGTATGACAtaagtaaattttgaaaatttaagagCTCTTGTGAAAAAATG
ATTCTTAAAACTATATTACTCTACCAGAGACtactttttcttattatttt
aatCATTAGAAGCCTATTCCTGCCACCCAATATTCATTTTGTTACTGCAG
AGTTATCTATTCTATATataaacttttcaatttcacaaCGTTTTAACTGG
TCAATGTaatatttaaaaattacaatCACCCAACATGATACAGTAATATT
TTATATTTCCTATTTTATTGATGAAAAACCCTTACTATAGGTCCATTTTG
CTGTAAATATTTTGTTCTACATCTTGTTTTTAGTACTCACTTTTTGATTG
CCCTtatatttctttatatttttttattctatacatatttctttcacttt
cattctcttgttatatatttttcctattttaatttttataactATTTCTT
TTATCTATTTAgaattgttttttaattttagcatCATATCTGttttaaca
aacttttaaaGAATCTGGTACTAGTATTTTGTTGCTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014339XLOC_014339Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025534-exon-sc0000539-1491911889:837..1054TCONS_00025534-exon-sc0000539-1491911889:837..1054Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1510915933:837..1054TCONS_00025534-exon-sc0000539-1510915933:837..1054Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1575043694:837..1054TCONS_00025534-exon-sc0000539-1575043694:837..1054Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1491911889:1214..1254TCONS_00025534-exon-sc0000539-1491911889:1214..1254Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1510915933:1214..1254TCONS_00025534-exon-sc0000539-1510915933:1214..1254Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1575043694:1214..1254TCONS_00025534-exon-sc0000539-1575043694:1214..1254Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1491911889:1551..1610TCONS_00025534-exon-sc0000539-1491911889:1551..1610Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1510915933:1551..1610TCONS_00025534-exon-sc0000539-1510915933:1551..1610Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1575043694:1551..1610TCONS_00025534-exon-sc0000539-1575043694:1551..1610Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1491911889:1962..2015TCONS_00025534-exon-sc0000539-1491911889:1962..2015Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1510915933:1962..2015TCONS_00025534-exon-sc0000539-1510915933:1962..2015Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1575043694:1962..2015TCONS_00025534-exon-sc0000539-1575043694:1962..2015Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1491911889:2113..2175TCONS_00025534-exon-sc0000539-1491911889:2113..2175Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1510915933:2113..2175TCONS_00025534-exon-sc0000539-1510915933:2113..2175Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1575043694:2113..2175TCONS_00025534-exon-sc0000539-1575043694:2113..2175Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1491911889:2428..2473TCONS_00025534-exon-sc0000539-1491911889:2428..2473Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1510915933:2428..2473TCONS_00025534-exon-sc0000539-1510915933:2428..2473Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1575043694:2428..2473TCONS_00025534-exon-sc0000539-1575043694:2428..2473Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1491911889:3640..3791TCONS_00025534-exon-sc0000539-1491911889:3640..3791Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1510915933:3640..3791TCONS_00025534-exon-sc0000539-1510915933:3640..3791Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1575043694:3640..3791TCONS_00025534-exon-sc0000539-1575043694:3640..3791Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1491911889:4554..4607TCONS_00025534-exon-sc0000539-1491911889:4554..4607Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1510915933:4554..4607TCONS_00025534-exon-sc0000539-1510915933:4554..4607Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1575043694:4554..4607TCONS_00025534-exon-sc0000539-1575043694:4554..4607Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1491911889:4767..4944TCONS_00025534-exon-sc0000539-1491911889:4767..4944Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1510915933:4767..4944TCONS_00025534-exon-sc0000539-1510915933:4767..4944Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1575043694:4767..4944TCONS_00025534-exon-sc0000539-1575043694:4767..4944Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1491911889:5295..6026TCONS_00025534-exon-sc0000539-1491911889:5295..6026Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1510915933:5295..6026TCONS_00025534-exon-sc0000539-1510915933:5295..6026Clytia hemisphaericaexon
TCONS_00025534-exon-sc0000539-1575043694:5295..6026TCONS_00025534-exon-sc0000539-1575043694:5295..6026Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000539supercontigsc0000539:837..6026 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0121065	0	0.104982	0	0.433896	0	0.968056	1.55456	1.28902	0.423635	0.688179	0.992661	0.650432	0.79381	0	0	0	0	0	0	0	0.0257611	0.0585717	0	0.541659	1.4736	0.164564	0	0.0716802	0.151808
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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