TCONS_00025532 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025532
Unique NameTCONS_00025532
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025532 ID=TCONS_00025532|Name=TCONS_00025532|organism=Clytia hemisphaerica|type=transcript|length=1514bp
cgttcacgcaagttttttcaattcacgcattcacaaaattttttttcaat
tttcacacaTTCACGCAACCAAAAAAGCCCATTCACACATTCACGCAGAC
CGCTGGGGGAGCCCTCTAATAGCAGCTCTGTCAGAGGCGTAGCCAGGAGT
TGAAGGGTATGTTTTTTCATTGCAGATAATAAACGAGCTGCTGAAGCTAC
ACTCCCAAAAGTGGATATCTTTATTGAAAAAGCCATTGATGGAAAAAGGG
CTAGAAAGAAGAAATCAGAAAACATGTACGAATATGATGATGAGGACGAG
TCAGCGAAAGAAAAAAAACAGAAATTAAGTGAGAATAAAGAAAATAACAC
TGGAATTCTGAAGACTGTTACAAGCAAAAAGAAAAATGGCAATCAACAAG
TATCAGTGAAAGCAGATGATAAACTTGGAAAGAAAAAAAAGGTGAACGTT
AATGCAGATGCTCAGAAAGCAACACACCAAGATTTTATGACTGAAATAAA
AACAATGAAAGAAAAATTGAATGCTGCTAAAATACCAATCGAACAAACCA
AATCCTGATCAAGAAGTAGATGGACATTACGGCCAACTGTCAAAGGAGCA
AATTaaaaaagtcaaagagATTGGTAAAACTTGTGTGAATTACAAGGGTG
GAATAAACCGGATGATGGATGTTGTGTTCACTGAACAAGAAATGATTTCT
TGTACACCTTGTGGTCAGGCaagtcaaaaaaataaagaggCGAGAGGGGC
ATTACCATCTGATGGAATGAATATAATTTATAAATACATCAGAAAAAGAT
TTCCTGACGAATTTCCGGATGGGGAAAATAATTCCAAAATGCACAGTCAG
ATGACAAATCATTTGAAGGTTGTGGTTAGAGCCTTCAATTCAAGAATGAG
Gccgtcaaaaaattgagaattattttcagttgttttttgagctattttca
tttttaggttTACACTGTTCTTTTGGTATGACAtaagtaaattttgaaaa
tttaagagCTCTTGTGAAAAAATGATTCTTAAAACTATATTACTCTACCA
GAGACtactttttcttattattttaatCATTAGAAGCCTATTCCTGCCAC
CCAATATTCATTTTGTTACTGCAGAGTTATCTATTCTATATataaacttt
tcaatttcacaaCGTTTTAACTGGTCAATGTaatatttaaaaattacaat
CACCCAACATGATACAGTAATATTTTATATTTCCTATTTTATTGATGAAA
AACCCTTACTATAGGTCCATTTTGCTGTAAATATTTTGTTCTACATCTTG
TTTTTAGTACTCACTTTTTGATTGCCCTtatatttctttatattttttta
ttctatacatatttctttcactttcattctcttgttatatatttttccta
ttttaatttttataactATTTCTTTTATCTATTTAgaattgttttttaat
tttagcatCATATCTGttttaacaaacttttaaaGAATCTGGTACTAGTA
TTTTGTTGCTTTAA
Run BLAST on NCBI

transcript from alignment at sc0000539:769..6026+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025532 ID=TCONS_00025532|Name=TCONS_00025532|organism=Clytia hemisphaerica|type=transcript|length=5258bp|location=Sequence derived from alignment at sc0000539:769..6026+ (Clytia hemisphaerica)
cgttcacgcaagttttttcaattcacgcattcacaaaattttttttcaat
tttcacacaTTCACGCAACCAAAAAAGCCCATTCACACATTCACGCAGAC
CGCTGGGGGAGCCCTCTAATAGCAGCTCTGTCAGAGGCGTAGCCAGGAGT
TGAAGGGTATGTTTTTTCATTGCAGATAATAAACGAGCTGCTGAAGCTAC
ACTCCCAAAAGTGGATATCTTTATTGAAAAAGCCATTGATGGAAAAAGGG
CTAGAAAGAAGAAATCAGAAAACATGTACGAATATGGTAAGATTATTTGA
GATGTGCAATAGAAATAAAGAGATTAGCAGGGAAAAATCTTAATAAAAAG
ATTTTGTGCTATGTGTTATGACTCAAATTTTCTTTTAAGCTGGACTTCAG
TGTTGCATTTGCTCCTGCACTTTTTATTTCTTTTTTTCTACTCAGATGAT
GAGGACGAGTCAGCGAAAGAAAAAAAACAGAAATTAGTAAGAAAATATTC
TTCAATAGAAATTATGTTAACGTACAAATTATTGAATTTCATGCCAAGAT
TCATTTTCTGAAACTAAGGTAAGTCCCAGTAAATTTGCTATTTTTGTGAT
CAATATCAGGGTTTTCAGGTCCATATATATGATCTCATTATGATATCCAT
AATAATTGTTTCCAAAATTAAGTAATCATGATCACAATCCTTCTTGAATA
TTTAGATTTTTTAATTTTCGCTCAAGCCAAATTTCTGTTTTTACGCGTCT
ATATTTTAATAATAGCATCTTTTTTATCACAGAGTGAGAATAAAGAAAAT
AACACTGGAATTCTGAAGACTGTTACAAGCAAAAAGAAAAATGTAAGAAA
ACAAGCTTAAATTTTGTTTTGTTTAAGAAATGAATTAATAGCAGACCTAT
GGCCATGAACAAAGCCTGCATGTGCTAAAGTAGCACTCTATGAAAAATAT
ATAACAGATTATGACGTGCTATTAGCACTCCTAAAGAGGGTTTTGTTCAA
ACTTGTATATTTTAGGAGTGATATTTTAGCAGTTGCAAATCATTTTACGT
GTGTGTCAGCGTGTGCGAGAGCATGCCAGGTCAGGCCTGTAATAGAAATA
TACTGATGAACAGTAAGATTTTTATACTTAATAAATTTATGAAACCCACA
TTTTGCACTTCATAGTTTCAAATCATTCATTCATTTTTTCTAGGGCAATC
AACAAGTATCAGTGAAAGCAGATGATAAACTTGGAAAGAAAAAAAAGGTA
ACATTGTAAAACTACATTCAGAGTTTGGTATAAAAAAACAAAACACCAGT
TTTGAATTATTGAAGCAGTCATTCATTTATTTCCATTTTACAAGGTGAAC
GTTAATGCAGATGCTCAGAAAGCAACACACCAAGATTTTATGACTGAAAT
AAAAACAGTAAATACATTTTGTAAATTATCTTTGTATAGCTCAGGTTTTG
TTCAAACTTTTATAGTTGAAAGTAGCCTCTTTTTTGAGTTTTCTCCCCTT
TTTTTATAGCATAAAAAGGTATTTTGTTTCTTCGAATAAGGGAATTATAC
TTGAACAATAGATGTATTTTGTTTTTGATTGGAATTTATCCTAAAGGTTT
GTTTTTTTTACTTAAAGATATGCATGATTAAAGGACTAGGAGTTTACTTT
TTTTTACAGATGAAAGAAAAATTGAATGCTGCTAAAATACCAATCGAACA
AACCAGTGAGTTTTACTATTTGTTTTGAAAGTGCAGTTGATGCTCTCTGA
TTCGATCTTTAAGGGGaattaataaaaatatactttGTCAGATGGTTTTA
AACTCAAAACTGCTTGAAGGTTTTCTATATGAATATTATATACACAAGTA
TGTAACAAATGCATCCAAAAAACTTTACACAACAGTGCATTCACAAGATG
ATAGACAATTAGTATGCATgagttaccttaagggaataaattaatgcgag
aaTTAATTTATGCGGAATAAGTTAATGCGAGTAACCCCCAAAAAATTATA
TGTTTTGCGGAACAAATTAATGCGAAAAGGCCCATTTTAAGGAGTTTTGC
GGAATTAGTTTGGGCGCTTTTTAAGTAAGAGAATAATGTCAAATATGGGA
ATACAAGTGCTTAATTTATGCACTGGAGTCCAAAAAATGAATATTTGGGA
TTTACACCTCCAAAAtcagcaatattttagaaaaaaatgcgGAATTTATT
AATGCGAATGGCGAATGGccgaaattttttaatttttgcggaatttcaaA
TTTGCATTAATTAATTCCGTATTAATtcattcccttaaggtaacatATAA
CAATAAAATAATACAATAACATAACATGACATCACTATGACAACATTGAG
ACACTTTCAAAACATGACAATTGACAATGCTACCGACAACTTAATACATC
ACAACAAAAACGTGCAATTTACAGACCAACATTTAACATTGATAATTTAC
AGAATAAAGTCACAATATATAAACAAATGCTACTATAATGTACTAGACTT
AATTAATGATGGCTTGGATACTGAAAAGACGTGCAAaagctgcaaacaaa
aaaagagACTGGAAACAAAGGAAAACACTGACCAAACAGAAAAACACTGA
CCAAACAGAAAAACACTGACCATACAGAAAAACACTGACCATACAGAAAA
ACACTGACCAAATAGAAAAACACAGAAAGAgctgaaaaccccaaaaatag
gGAAAACCCCATACATCCTGAGGAGAACCATAACAGTCACTGTGTCTCAG
CCACtacaaaaatagctatttcNctgaaaaccccaaaaataggGAAAACC
CCAAACATCCTGAGGAGAACCATAACAGTCACTGTGTCTCAGCCACTACA
AAAATAGCTATTTTTTTTAAGGTGTTAACTCTGATACAGAAAACGACGAG
GAGCTACTGAATGTCAGCACATTGTCTCCCAACAAAGTGTCATGTGAGAG
TAGCGATCATGTAGCTGAACCTGCCTCACCAAAGAGAACGACAATGACTA
GACAGACACAAGGTCATGAAAAGGTACAACATAACCTGATACCTTCGATG
ACCAAAAGTCCTGAAAAGACAAACAATACCATTCTACAGCCCATTCGAAG
GACTTCGCCAAGAAAAAAAGCCCATAATAGCCTACAGACACTATCTTTTC
TATCATTGACCAAAGGTCCTGAAAAGGCACAACATAACCTGATACCTTCG
ATGACCAAAAGTCCTGAAAAGACAAACTTTACCACTCTACAGCCCATTCA
AAGGACTTCGCCAAGAAAAAAAGCCCATAATAGCCTACCAAGGCCTTCAA
TTAACTTAAATAATTTTGAACAACAACCTTGGCAACAGCAAACACAAAAG
CAAGTTACAAACAGCACTCCAACGTCTAATAATTTTTTGGGAATAAACCC
ACTTGGTTTTTTAGAGAGTAGTACCAGTAGTACTGGGTCTCCTGGCTTTG
TTAATGAATTAAACAACAATTATGGATATTGGAATAATTCAAATAACAAT
ACACCATCAAATTCTGTTACCAATAACCAAAGAATGTATAATTCTCAATC
CTTGACATCTTTGTGCGAGATTGTCAACGGTCTTCAAGCAAGGGTCAAGG
CTCTTGAAGATGAAAATTCAAACCTGAAGACAGTTGTACATATGTTGATG
GAGAAAAGCCAAAACGATAACAGACCAAATGTAAATAGCCACTTTAATCT
TGTTATTTTGTTacatttgtctcaaaatctcaaaaaattttcccataTTG
CACTTGGTAATGTGTaacaattattgttatttaagAATCCTGATCAAGAA
GTAGATGGACATTACGGCCAACTGTCAAAGGAGCAAATTGTAAgttttaa
aaaacataaaattatttcacagcaaattttacaatttggAAATAGTTGAT
AGTCAACATTAACATAATTATTATTGACATTTACAGAAATGTTTCTAATT
ATAACGTTTTTAACAAATCTTTGTCAACTTGTCATTctatttatttagaa
aaaagtcaaagagATTGGTAAAACTTGTGTGAATTACAAGGGTGGAATAA
ACCGGATGATGGATGTTGTGTTCACTGAACAAGAAATGATTTCTTGTACA
CCTTGTGGTCAGGCaagtcaaaaaaataaagaggCGAGAGGGGCATTACC
ATCTGATGGAATGAATATAATTTATAGTAAgagtagtttttttttaattt
gagtgaagatctgtttttttttaagcacAAGAAAGATATGATTTTGTGAA
TTAGAATAACTTGAATAAACACACATCACTTTATATGGCTTCCTGANTTT
AAGCACAAGAAAGATATGATTTTGTGAATTAGAATAACTTGAATAAACAC
ACACCACTTTATATGGCTTCCTGTgtgtatctttttttttaatttagcaa
CTAGAATATCTGTTGGACAGCGcaatttctatttatttttggCCTTACTC
CTGCTTACTCTTGTGCTTTTGTGTAGATTATAATAAAGATTGTTATATTA
TATTAATTCAAAGACTTTATTTATAGAATACATCAGAAAAAGATTTCCTG
ACGAATTTCCGGATGGGGAAAATAATTCCAAAATGCACAGTCAGATGACA
AATCATTTGAAGGTTGTGGTTAGAGCCTTCAATTCAAGAATGAGGccgtc
aaaaaattgagaattattttcagttgttttttgagctattttcattttta
ggttTACACTGTTCTTTTGGTATGACAtaagtaaattttgaaaatttaag
agCTCTTGTGAAAAAATGATTCTTAAAACTATATTACTCTACCAGAGACt
actttttcttattattttaatCATTAGAAGCCTATTCCTGCCACCCAATA
TTCATTTTGTTACTGCAGAGTTATCTATTCTATATataaacttttcaatt
tcacaaCGTTTTAACTGGTCAATGTaatatttaaaaattacaatCACCCA
ACATGATACAGTAATATTTTATATTTCCTATTTTATTGATGAAAAACCCT
TACTATAGGTCCATTTTGCTGTAAATATTTTGTTCTACATCTTGTTTTTA
GTACTCACTTTTTGATTGCCCTtatatttctttatatttttttattctat
acatatttctttcactttcattctcttgttatatatttttcctattttaa
tttttataactATTTCTTTTATCTATTTAgaattgttttttaattttagc
atCATATCTGttttaacaaacttttaaaGAATCTGGTACTAGTATTTTGT
TGCTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014339XLOC_014339Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025532-exon-sc0000539-1491911889:769..1054TCONS_00025532-exon-sc0000539-1491911889:769..1054Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1510915933:769..1054TCONS_00025532-exon-sc0000539-1510915933:769..1054Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1575043694:769..1054TCONS_00025532-exon-sc0000539-1575043694:769..1054Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1491911889:1214..1254TCONS_00025532-exon-sc0000539-1491911889:1214..1254Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1510915933:1214..1254TCONS_00025532-exon-sc0000539-1510915933:1214..1254Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1575043694:1214..1254TCONS_00025532-exon-sc0000539-1575043694:1214..1254Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1491911889:1551..1610TCONS_00025532-exon-sc0000539-1491911889:1551..1610Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1510915933:1551..1610TCONS_00025532-exon-sc0000539-1510915933:1551..1610Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1575043694:1551..1610TCONS_00025532-exon-sc0000539-1575043694:1551..1610Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1491911889:1962..2015TCONS_00025532-exon-sc0000539-1491911889:1962..2015Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1510915933:1962..2015TCONS_00025532-exon-sc0000539-1510915933:1962..2015Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1575043694:1962..2015TCONS_00025532-exon-sc0000539-1575043694:1962..2015Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1491911889:2113..2175TCONS_00025532-exon-sc0000539-1491911889:2113..2175Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1510915933:2113..2175TCONS_00025532-exon-sc0000539-1510915933:2113..2175Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1575043694:2113..2175TCONS_00025532-exon-sc0000539-1575043694:2113..2175Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1491911889:2428..2473TCONS_00025532-exon-sc0000539-1491911889:2428..2473Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1510915933:2428..2473TCONS_00025532-exon-sc0000539-1510915933:2428..2473Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1575043694:2428..2473TCONS_00025532-exon-sc0000539-1575043694:2428..2473Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1491911889:4554..4607TCONS_00025532-exon-sc0000539-1491911889:4554..4607Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1510915933:4554..4607TCONS_00025532-exon-sc0000539-1510915933:4554..4607Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1575043694:4554..4607TCONS_00025532-exon-sc0000539-1575043694:4554..4607Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1491911889:4767..4944TCONS_00025532-exon-sc0000539-1491911889:4767..4944Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1510915933:4767..4944TCONS_00025532-exon-sc0000539-1510915933:4767..4944Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1575043694:4767..4944TCONS_00025532-exon-sc0000539-1575043694:4767..4944Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1491911889:5295..6026TCONS_00025532-exon-sc0000539-1491911889:5295..6026Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1510915933:5295..6026TCONS_00025532-exon-sc0000539-1510915933:5295..6026Clytia hemisphaericaexon
TCONS_00025532-exon-sc0000539-1575043694:5295..6026TCONS_00025532-exon-sc0000539-1575043694:5295..6026Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000539supercontigsc0000539:769..6026 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.14281	0.0636166	0	15.2086	14.8431	13.097	13.5063	5.02678	7.36597	1.49792	3.9899	4.48685	3.51692	0	0	0.163267	0.0709814	0	0	0	0	0	0	3.90207	3.16108	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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