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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025527 ID=TCONS_00025527|Name=TCONS_00025527|organism=Clytia hemisphaerica|type=transcript|length=1132bp
CGATTTAAGCGTCTTGTCATGGGTGCTGGACCTGCCAGTCAAGAGTTCCA
CGAGCGTTTGCGGCAAAGTATTGTAGACCTCGTTGGTGTGGAACAGATTG
AAGATGATTTGCTAGTTTACGGAGAGACCCAGCATGAGCATGACCTCCAT
TTGAGTGCTCTACTTGATCGATTACAATCCCTTGGCTTAACACTTAGAGG
AGAGAAATGTGTGTGGAGTGCTCCAGAAGTTATTTGCTTTGGGTATAAGT
TTTCCAGCGAAGGTATGTCTGCAGATCCATCGAAAGTAGAGACTATCGTC
AGACTCGCACCACCAACCAACGCAGCGGAAGTAAAAAGTTTCTTGCAGAT
GTGTCAATATAACGCCCTCTTTATGTTTGGAGAGCCAGAGACTTACAGTG
ACATTACAGCACCGTTAAGAAATCTAACGCGCAAGAAAGTTCCATTCCAC
TGGGATCAAGCTTGTCAGGACGCATTCGACAAACTGATTGCCGTGATTGC
TCTCGCTCATGAAGGGCATCAAGGCGCATCAAAAATGAAGCGTTATCTCC
GATCGAAAGTTTGGTTTCCCAACATGGACAAGCTTGTGGAGAACTTTGNG
GTAGCCCACACCGCCTATGTCGAACACAAGGACCCAAAAGAAGCGGTTCA
CAGATATCTTCTTTCGTACCGGGCGACTCCTCATTCAGCCACTGGAAAGT
CACCGGCGGAGATGTTGTTCAATCGACAAATTGCAGCCTCTGTTCCAATG
ATGAAAAAGAAGGAACAAGGTCGATCCGTTCTCGAGAAAGATACAAGTTA
CAAGGCCGCCATGGCCAAATACCATGACCAACGACGACACGCGAAGCCCA
TTGACATCGACCTAGGGGACAAAGTCCTTCGCCCTCAAAAGAAGTCTACC
GTCAAGACTCCTTTCGACCCATCACCATTGACGNNNNNNNNNNNNNNNNN
NNNTGACTGTGGTGAAAAAGAAAGGTTATATGCTCACCGCCGAAACATCG
AAAGGCAAATTTGTTACCCGTGCAGCAAACAAGTTCAAGAAAGTCCATGA
GCGCGATCCGTTTTTCAGACGCGCACGTCAACACGAAATTACGTCGACGC
CGACTCGGATGATGATTTTCCGTTTCGTCATC Run BLAST on NCBI protein sequence of TCONS_00025527-protein >TCONS_00025527-protein ID=TCONS_00025527-protein|Name=TCONS_00025527-protein|organism=Clytia hemisphaerica|type=polypeptide|length=349bp
RFKRLVMGAGPASQEFHERLRQSIVDLVGVEQIEDDLLVYGETQHEHDLH
LSALLDRLQSLGLTLRGEKCVWSAPEVICFGYKFSSEGMSADPSKVETIV
RLAPPTNAAEVKSFLQMCQYNALFMFGEPETYSDITAPLRNLTRKKVPFH
WDQACQDAFDKLIAVIALAHEGHQGASKMKRYLRSKVWFPNMDKLVENFX
VAHTAYVEHKDPKEAVHRYLLSYRATPHSATGKSPAEMLFNRQIAASVPM
MKKKEQGRSVLEKDTSYKAAMAKYHDQRRHAKPIDIDLGDKVLRPQKKST
VKTPFDPSPLTXXXXXXXDCGEKERLYAHRRNIERQICYPCSKQVQESP Run BLAST on NCBI transcript from alignment at sc0000538:148550..149681 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025527 ID=TCONS_00025527|Name=TCONS_00025527|organism=Clytia hemisphaerica|type=transcript|length=1132bp|location=Sequence derived from alignment at sc0000538:148550..149681 (Clytia hemisphaerica)
GATGACGAAACGGAAAATCATCATCCGAGTCGGCGTCGACGTAATTTCGT
GTTGACGTGCGCGTCTGAAAAACGGATCGCGCTCATGGACTTTCTTGAAC
TTGTTTGCTGCACGGGTAACAAATTTGCCTTTCGATGTTTCGGCGGTGAG
CATATAACCTTTCTTTTTCACCACAGTCANNNNNNNNNNNNNNNNNNNNC
GTCAATGGTGATGGGTCGAAAGGAGTCTTGACGGTAGACTTCTTTTGAGG
GCGAAGGACTTTGTCCCCTAGGTCGATGTCAATGGGCTTCGCGTGTCGTC
GTTGGTCATGGTATTTGGCCATGGCGGCCTTGTAACTTGTATCTTTCTCG
AGAACGGATCGACCTTGTTCCTTCTTTTTCATCATTGGAACAGAGGCTGC
AATTTGTCGATTGAACAACATCTCCGCCGGTGACTTTCCAGTGGCTGAAT
GAGGAGTCGCCCGGTACGAAAGAAGATATCTGTGAACCGCTTCTTTTGGG
TCCTTGTGTTCGACATAGGCGGTGTGGGCTACCNCAAAGTTCTCCACAAG
CTTGTCCATGTTGGGAAACCAAACTTTCGATCGGAGATAACGCTTCATTT
TTGATGCGCCTTGATGCCCTTCATGAGCGAGAGCAATCACGGCAATCAGT
TTGTCGAATGCGTCCTGACAAGCTTGATCCCAGTGGAATGGAACTTTCTT
GCGCGTTAGATTTCTTAACGGTGCTGTAATGTCACTGTAAGTCTCTGGCT
CTCCAAACATAAAGAGGGCGTTATATTGACACATCTGCAAGAAACTTTTT
ACTTCCGCTGCGTTGGTTGGTGGTGCGAGTCTGACGATAGTCTCTACTTT
CGATGGATCTGCAGACATACCTTCGCTGGAAAACTTATACCCAAAGCAAA
TAACTTCTGGAGCACTCCACACACATTTCTCTCCTCTAAGTGTTAAGCCA
AGGGATTGTAATCGATCAAGTAGAGCACTCAAATGGAGGTCATGCTCATG
CTGGGTCTCTCCGTAAACTAGCAAATCATCTTCAATCTGTTCCACACCAA
CGAGGTCTACAATACTTTGCCGCAAACGCTCGTGGAACTCTTGACTGGCA
GGTCCAGCACCCATGACAAGACGCTTAAATCG Coding sequence (CDS) from alignment at sc0000538:148550..149681 >TCONS_00025527 ID=TCONS_00025527|Name=TCONS_00025527|organism=Clytia hemisphaerica|type=CDS|length=1050bp|location=Sequence derived from alignment at sc0000538:148550..149681 (Clytia hemisphaerica)
TCATGGACTTTCTTGAACTTGTTTGCTGCACGGGTAACAAATTTGCCTTT
CGATGTTTCGGCGGTGAGCATATAACCTTTCTTTTTCACCACAGTCANNN
NNNNNNNNNNNNNNNNNCGTCAATGGTGATGGGTCGAAAGGAGTCTTGAC
GGTAGACTTCTTTTGAGGGCGAAGGACTTTGTCCCCTAGGTCGATGTCAA
TGGGCTTCGCGTGTCGTCGTTGGTCATGGTATTTGGCCATGGCGGCCTTG
TAACTTGTATCTTTCTCGAGAACGGATCGACCTTGTTCCTTCTTTTTCAT
CATTGGAACAGAGGCTGCAATTTGTCGATTGAACAACATCTCCGCCGGTG
ACTTTCCAGTGGCTGAATGAGGAGTCGCCCGGTACGAAAGAAGATATCTG
TGAACCGCTTCTTTTGGGTCCTTGTGTTCGACATAGGCGGTGTGGGCTAC
CNCAAAGTTCTCCACAAGCTTGTCCATGTTGGGAAACCAAACTTTCGATC
GGAGATAACGCTTCATTTTTGATGCGCCTTGATGCCCTTCATGAGCGAGA
GCAATCACGGCAATCAGTTTGTCGAATGCGTCCTGACAAGCTTGATCCCA
GTGGAATGGAACTTTCTTGCGCGTTAGATTTCTTAACGGTGCTGTAATGT
CACTGTAAGTCTCTGGCTCTCCAAACATAAAGAGGGCGTTATATTGACAC
ATCTGCAAGAAACTTTTTACTTCCGCTGCGTTGGTTGGTGGTGCGAGTCT
GACGATAGTCTCTACTTTCGATGGATCTGCAGACATACCTTCGCTGGAAA
ACTTATACCCAAAGCAAATAACTTCTGGAGCACTCCACACACATTTCTCT
CCTCTAAGTGTTAAGCCAAGGGATTGTAATCGATCAAGTAGAGCACTCAA
ATGGAGGTCATGCTCATGCTGGGTCTCTCCGTAAACTAGCAAATCATCTT
CAATCTGTTCCACACCAACGAGGTCTACAATACTTTGCCGCAAACGCTCG
TGGAACTCTTGACTGGCAGGTCCAGCACCCATGACAAGACGCTTAAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025527-exon-sc0000538-1491911889:148550..149681 | TCONS_00025527-exon-sc0000538-1491911889:148550..149681 | Clytia hemisphaerica | exon |
| TCONS_00025527-exon-sc0000538-1510915933:148550..149681 | TCONS_00025527-exon-sc0000538-1510915933:148550..149681 | Clytia hemisphaerica | exon |
| TCONS_00025527-exon-sc0000538-1575043694:148550..149681 | TCONS_00025527-exon-sc0000538-1575043694:148550..149681 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000538 | supercontig | sc0000538:148550..149681 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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