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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025523 ID=TCONS_00025523|Name=TCONS_00025523|organism=Clytia hemisphaerica|type=transcript|length=2116bp
TCCCTGTGTACATCAGCAAAAACTATTGAATTTTCTTAGGTCAATAAACA
TAAGCATCAAAAGTTTCTTCATTAAAATCGTAACAGTCAAAAAAGTAATC
TTAAGAATCATTcaagaaatcatgaaaatcataaaacattGAAATAGGTC
GTAAATAATGAGGTATTATATTGTTATAATATTCAGCATCATCATTATCC
TTCAATCTAGGTTCGAACAAACAATAATCCTCCCTCCAAAGCTTGCGATC
AGCCATTGCAGTACCCAGTTCTTCAATCTCTAGATGTGTTACTCGTCTCT
AAAGTCAAGGATAACATTTAATGAAAAGTATGTTGTAGTAAAATAACACA
CAGCAAAATCGAATCGGTCAAAACCAGACTGCATAAAACAATGATGCTTA
CCTTAACCAGCGGTAGCCATTTTTCATCTTGTGATCCCAGAAACTGTTTC
TACGTAGAGCACCATACGCATAATCCACATAGCCAGGTAGTTCATGCATT
GtgctctggtctgtaaaatgtaTTTCTTTGCCGATATGTGAATAACCTGA
ATTCTTTGGTGGAACGACTGTAGCAATATCCCTTCCAAACGTTACCCTTA
GATTCATTCCTCGAACAGCTCGATTGACATTATTAGCAAATATAACATTT
CCAGGTCTAGGTGAACCGAAAGTTACATAATCAACAAGATAACCTCTCAT
TGAAAGTTCATAAGCTGCCAGAGCCGCTTTAGCTCCTCCCAAAGAATGCC
CTGTGGCCAATATTTTTGCTTTTGGGTGTTTCCTGGTTAAAATGTCAACT
TTTTCAAGCATTGGTTTGCGTACAATACTATAAGAGTTCAGAAACCCAGT
GTGAACCTGGCATCCACCACAACCGCTATAAGACTTTTTAACGACCAGTG
CATCAGTAAGTCGATCTTCCCAAGTATCTGTTCCTCTAAAAGCAACTACA
ATGAAGTCGTATCTGTACTCCACGAAGCCATAAACTGTTTTGCCTTCACT
GTGTTTTCTGTGGTACGTTTCTTCAGAGAGTAATGCAGCTTTATGGATCA
GCGTTTTGATCATTCTGTTGTTACTCTCGGGAATGGGTTCAAGCGAAGGA
ATTGGACAGAAATGTTTTCTTGGGCATTTGAGACATTCATCAGAGCCTTC
TGGAGAGTAATACTTATAATGACAGATAATGGGAAAACCATGAATACATT
TACTACCAGCAGGGCAAAGCTCACATTTGGATGCGCCTTCTTTCAGATTG
TATGTACCAGGCTTGCACCATTTACATGCCACTCGACCAGGTTGGTCTTG
GTATTTTCGTGGTGGGCACTTCAAGGGATGATTGACCCAGTACTTTGGAC
AATAATGTCCTTTAGGGCATGTCTTACATTTTACAGCACCTTCAACGTCA
CTGTACGTCCCTTCACCGCATCTCTTGCAGTCTGCGCGTTGATTACCGAA
ATAGATGAACGATGGTTGATATTGTCCTAAGCCGCACGGCGTACATCGAG
TAGACCTCCTTTTGTCGGTGTAGGTACCTGCTTCGCAAATCTTGCACGTG
GTTTGACCAACTTCGTCTTGGTATTGTCCCCAGTAACATGGTGTTGCGTA
TTTATTCACCCAGGAATGACACCAATGCCCAACAGGGCATGTCTTACATT
CCAGTGCGCCAATTTGATCACTGTATTTACCTTTTCCACAAGGCTGACAA
CCAAGCGGATTTGCAATTTGCGGGTTATGGTATCCTCTACGACATTTTAT
TGGCTTGTTAAAAAAGTCACAGCTATGACCTGCTGGGCATGGTTTACATT
CCGTGGCCCCTCTGACATCACTGTAATAACCCTTTTCACAATCCATACAA
TGCTTATCGCAATTTGGTCTATTTGAGTAGCGCCCTTTGCTACATGGTTG
ACATTTGAGTTCACCATTACACCACCTAGAACCATAACCAGTACGGTCAT
TACACCTGGTACATCGGAAACCAGGAGAACATGGATTCTCACACGAGCAT
TCGTCAGCATACAATCCATAAACGGTgataaaaattatcaacaaaaTAAT
TATTATGGACCTCATGTTATTTACTCGTTTTGCctttttggttttgattt
tactttttgatCGTTT Run BLAST on NCBI protein sequence of TCONS_00025523-protein >TCONS_00025523-protein ID=TCONS_00025523-protein|Name=TCONS_00025523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=572bp
KRSKSKIKTKKAKRVNNMRSIIIILLIIFITVYGLYADECSCENPCSPGF
RCTRCNDRTGYGSRWCNGELKCQPCSKGRYSNRPNCDKHCMDCEKGYYSD
VRGATECKPCPAGHSCDFFNKPIKCRRGYHNPQIANPLGCQPCGKGKYSD
QIGALECKTCPVGHWCHSWVNKYATPCYWGQYQDEVGQTTCKICEAGTYT
DKRRSTRCTPCGLGQYQPSFIYFGNQRADCKRCGEGTYSDVEGAVKCKTC
PKGHYCPKYWVNHPLKCPPRKYQDQPGRVACKWCKPGTYNLKEGASKCEL
CPAGSKCIHGFPIICHYKYYSPEGSDECLKCPRKHFCPIPSLEPIPESNN
RMIKTLIHKAALLSEETYHRKHSEGKTVYGFVEYRYDFIVVAFRGTDTWE
DRLTDALVVKKSYSGCGGCQVHTGFLNSYSIVRKPMLEKVDILTRKHPKA
KILATGHSLGGAKAALAAYELSMRGYLVDYVTFGSPRPGNVIFANNVNRA
VRGMNLRVTFGRDIATVVPPKNSGYSHIGKEIHFTDQSTMHELPGYVDYA
YGALRRNSFWDHKMKNGYRWLR Run BLAST on NCBI transcript from alignment at sc0000538:83974..86089 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025523 ID=TCONS_00025523|Name=TCONS_00025523|organism=Clytia hemisphaerica|type=transcript|length=2116bp|location=Sequence derived from alignment at sc0000538:83974..86089 (Clytia hemisphaerica)
AAACGatcaaaaagtaaaatcaaaaccaaaaagGCAAAACGAGTAAATAA
CATGAGGTCCATAATAATTAttttgttgataatttttatcACCGTTTATG
GATTGTATGCTGACGAATGCTCGTGTGAGAATCCATGTTCTCCTGGTTTC
CGATGTACCAGGTGTAATGACCGTACTGGTTATGGTTCTAGGTGGTGTAA
TGGTGAACTCAAATGTCAACCATGTAGCAAAGGGCGCTACTCAAATAGAC
CAAATTGCGATAAGCATTGTATGGATTGTGAAAAGGGTTATTACAGTGAT
GTCAGAGGGGCCACGGAATGTAAACCATGCCCAGCAGGTCATAGCTGTGA
CTTTTTTAACAAGCCAATAAAATGTCGTAGAGGATACCATAACCCGCAAA
TTGCAAATCCGCTTGGTTGTCAGCCTTGTGGAAAAGGTAAATACAGTGAT
CAAATTGGCGCACTGGAATGTAAGACATGCCCTGTTGGGCATTGGTGTCA
TTCCTGGGTGAATAAATACGCAACACCATGTTACTGGGGACAATACCAAG
ACGAAGTTGGTCAAACCACGTGCAAGATTTGCGAAGCAGGTACCTACACC
GACAAAAGGAGGTCTACTCGATGTACGCCGTGCGGCTTAGGACAATATCA
ACCATCGTTCATCTATTTCGGTAATCAACGCGCAGACTGCAAGAGATGCG
GTGAAGGGACGTACAGTGACGTTGAAGGTGCTGTAAAATGTAAGACATGC
CCTAAAGGACATTATTGTCCAAAGTACTGGGTCAATCATCCCTTGAAGTG
CCCACCACGAAAATACCAAGACCAACCTGGTCGAGTGGCATGTAAATGGT
GCAAGCCTGGTACATACAATCTGAAAGAAGGCGCATCCAAATGTGAGCTT
TGCCCTGCTGGTAGTAAATGTATTCATGGTTTTCCCATTATCTGTCATTA
TAAGTATTACTCTCCAGAAGGCTCTGATGAATGTCTCAAATGCCCAAGAA
AACATTTCTGTCCAATTCCTTCGCTTGAACCCATTCCCGAGAGTAACAAC
AGAATGATCAAAACGCTGATCCATAAAGCTGCATTACTCTCTGAAGAAAC
GTACCACAGAAAACACAGTGAAGGCAAAACAGTTTATGGCTTCGTGGAGT
ACAGATACGACTTCATTGTAGTTGCTTTTAGAGGAACAGATACTTGGGAA
GATCGACTTACTGATGCACTGGTCGTTAAAAAGTCTTATAGCGGTTGTGG
TGGATGCCAGGTTCACACTGGGTTTCTGAACTCTTATAGTATTGTACGCA
AACCAATGCTTGAAAAAGTTGACATTTTAACCAGGAAACACCCAAAAGCA
AAAATATTGGCCACAGGGCATTCTTTGGGAGGAGCTAAAGCGGCTCTGGC
AGCTTATGAACTTTCAATGAGAGGTTATCTTGTTGATTATGTAACTTTCG
GTTCACCTAGACCTGGAAATGTTATATTTGCTAATAATGTCAATCGAGCT
GTTCGAGGAATGAATCTAAGGGTAACGTTTGGAAGGGATATTGCTACAGT
CGTTCCACCAAAGAATTCAGGTTATTCACATATCGGCAAAGAAAtacatt
ttacagaccagagcaCAATGCATGAACTACCTGGCTATGTGGATTATGCG
TATGGTGCTCTACGTAGAAACAGTTTCTGGGATCACAAGATGAAAAATGG
CTACCGCTGGTTAAGGTAAGCATCATTGTTTTATGCAGTCTGGTTTTGAC
CGATTCGATTTTGCTGTGTGTTATTTTACTACAACATACTTTTCATTAAA
TGTTATCCTTGACTTTAGAGACGAGTAACACATCTAGAGATTGAAGAACT
GGGTACTGCAATGGCTGATCGCAAGCTTTGGAGGGAGGATTATTGTTTGT
TCGAACCTAGATTGAAGGATAATGATGATGCTGAATATTATAACAATATA
ATACCTCATTATTTACGACCTATTTCaatgttttatgattttcatgattt
cttgAATGATTCTTAAGATTACTTTTTTGACTGTTACGATTTTAATGAAG
AAACTTTTGATGCTTATGTTTATTGACCTAAGAAAATTCAATAGTTTTTG
CTGATGTACACAGGGA Coding sequence (CDS) from alignment at sc0000538:83974..86089 >TCONS_00025523 ID=TCONS_00025523|Name=TCONS_00025523|organism=Clytia hemisphaerica|type=CDS|length=1719bp|location=Sequence derived from alignment at sc0000538:83974..86089 (Clytia hemisphaerica)
AAACGatcaaaaagtaaaatcaaaaccaaaaagGCAAAACGAGTAAATAA
CATGAGGTCCATAATAATTAttttgttgataatttttatcACCGTTTATG
GATTGTATGCTGACGAATGCTCGTGTGAGAATCCATGTTCTCCTGGTTTC
CGATGTACCAGGTGTAATGACCGTACTGGTTATGGTTCTAGGTGGTGTAA
TGGTGAACTCAAATGTCAACCATGTAGCAAAGGGCGCTACTCAAATAGAC
CAAATTGCGATAAGCATTGTATGGATTGTGAAAAGGGTTATTACAGTGAT
GTCAGAGGGGCCACGGAATGTAAACCATGCCCAGCAGGTCATAGCTGTGA
CTTTTTTAACAAGCCAATAAAATGTCGTAGAGGATACCATAACCCGCAAA
TTGCAAATCCGCTTGGTTGTCAGCCTTGTGGAAAAGGTAAATACAGTGAT
CAAATTGGCGCACTGGAATGTAAGACATGCCCTGTTGGGCATTGGTGTCA
TTCCTGGGTGAATAAATACGCAACACCATGTTACTGGGGACAATACCAAG
ACGAAGTTGGTCAAACCACGTGCAAGATTTGCGAAGCAGGTACCTACACC
GACAAAAGGAGGTCTACTCGATGTACGCCGTGCGGCTTAGGACAATATCA
ACCATCGTTCATCTATTTCGGTAATCAACGCGCAGACTGCAAGAGATGCG
GTGAAGGGACGTACAGTGACGTTGAAGGTGCTGTAAAATGTAAGACATGC
CCTAAAGGACATTATTGTCCAAAGTACTGGGTCAATCATCCCTTGAAGTG
CCCACCACGAAAATACCAAGACCAACCTGGTCGAGTGGCATGTAAATGGT
GCAAGCCTGGTACATACAATCTGAAAGAAGGCGCATCCAAATGTGAGCTT
TGCCCTGCTGGTAGTAAATGTATTCATGGTTTTCCCATTATCTGTCATTA
TAAGTATTACTCTCCAGAAGGCTCTGATGAATGTCTCAAATGCCCAAGAA
AACATTTCTGTCCAATTCCTTCGCTTGAACCCATTCCCGAGAGTAACAAC
AGAATGATCAAAACGCTGATCCATAAAGCTGCATTACTCTCTGAAGAAAC
GTACCACAGAAAACACAGTGAAGGCAAAACAGTTTATGGCTTCGTGGAGT
ACAGATACGACTTCATTGTAGTTGCTTTTAGAGGAACAGATACTTGGGAA
GATCGACTTACTGATGCACTGGTCGTTAAAAAGTCTTATAGCGGTTGTGG
TGGATGCCAGGTTCACACTGGGTTTCTGAACTCTTATAGTATTGTACGCA
AACCAATGCTTGAAAAAGTTGACATTTTAACCAGGAAACACCCAAAAGCA
AAAATATTGGCCACAGGGCATTCTTTGGGAGGAGCTAAAGCGGCTCTGGC
AGCTTATGAACTTTCAATGAGAGGTTATCTTGTTGATTATGTAACTTTCG
GTTCACCTAGACCTGGAAATGTTATATTTGCTAATAATGTCAATCGAGCT
GTTCGAGGAATGAATCTAAGGGTAACGTTTGGAAGGGATATTGCTACAGT
CGTTCCACCAAAGAATTCAGGTTATTCACATATCGGCAAAGAAAtacatt
ttacagaccagagcaCAATGCATGAACTACCTGGCTATGTGGATTATGCG
TATGGTGCTCTACGTAGAAACAGTTTCTGGGATCACAAGATGAAAAATGG
CTACCGCTGGTTAAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025523-exon-sc0000538-1491911889:83974..86089 | TCONS_00025523-exon-sc0000538-1491911889:83974..86089 | Clytia hemisphaerica | exon |
| TCONS_00025523-exon-sc0000538-1510915933:83974..86089 | TCONS_00025523-exon-sc0000538-1510915933:83974..86089 | Clytia hemisphaerica | exon |
| TCONS_00025523-exon-sc0000538-1575043694:83974..86089 | TCONS_00025523-exon-sc0000538-1575043694:83974..86089 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000538 | supercontig | sc0000538:83974..86089 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006629 | lipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006629 |
lipid metabolic process |
Blast
The following BLAST results are available for this feature:
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