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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025522 ID=TCONS_00025522|Name=TCONS_00025522|organism=Clytia hemisphaerica|type=transcript|length=2966bp
AGGCTATTATAATGAAAGGTGCAATGTATACAACAACCCGTTAGagtacc
aagaaaaagatcttaaAACCCATAAAGTATCTTGATGTGATGTATATAAT
ATTCTACTACAATGTGATATCgattattattatatacctgtaggcaaaaa
cagggttaataaatctcaataaccaatatctacctattgaatatctgctt
ataaTATGTCTATCTCAATGAAATGTCTTAGAAAGTCCACTTAAAAAGCA
ATTAAATTGCCGTACGTCGTGAAAAAGCGaataatattttcttctttcac
ATACGTCAAATGCATGTGTCCGATTAACGGGAATGCCACAATGTCCGTAT
ACTCATTGACGGTGAAGTCATACGGGCGTGAAATCCATTTTGGGTCAAGG
CTCAGCGGATGTCGTTGGAGATCGATACTGCCTTTACACTTTTCACTACC
GCAGCCCCTTAATTTCACAATGAAGCTATCGACATAAAACTTGCCCTTTA
ATTCTTTGTATCGCATTTCGACCCGTTCCATCATTAACTTTCGGTTAAGA
CAATTATCCCTCATGATAATACAGAGGCTGCTTCCGTCATATTTTTCCCA
CTTGTATTCCTCACCgtcctcatcatcatcatcggaATTTTCGACGTATT
CATAGTCTTCGTCGATTTTAAAATGATCTAATTTGTCATTATTCAAAATG
AACCGATTAAACACGTGTGTTGTACAATTATTGCTCAACTTCCACGATAT
CTGTTCATCAACATAATCTTCCCGATTCACGGACGCCGGTTTGTCCAGCT
TACGGACTATCAAAGCACTCGGGTAGTCCGCAAGACGCCAATTTCTCTCC
CGCTCGACGAGCTCAAAAAGATAAGTGTTTTCTTCGTCCTTTTCACTGCT
GTCAGGGTAAGGTAAGAATCTGCTAATACCATTTAAAGTTTCTTGGGACG
TCAAACCAGGTTCGAATTGGTATTGGAATTTCTCTAAACTTTCTTCTTCC
CGATTTTTGTTGTCCCGATATAAGCGGAAAGTACGATCCCAACCTGTCAG
CTTTTCTAGAGTACTTTCGATCCGCTCATTATGTCTATATTGATCGAACA
TGATGTGCGTCTTCCGTGCATTATCATATTCCTTTGTGATTTCAAATGAG
CATTTCTTCTCTGCGTTGACGTCGACTCCAAAGAAGTTCATCCTATAATA
CTGCGTCATGAACCTTCGATCGACACTGTAAAACAAATCGCGTATCGGTT
GTTTCACGTCCACATCCTGTTGTGTAACGACAAACAAATCACCATCCGGC
AGCTCGCCATCAGTAAAAAGGCAATGTAAAATCTCCTCCAAGGTGATCTC
TTCAGCCTGCTTTTGATCCCGGTCAAACATAATCAAGTAGTCCTTCTCGC
GGTTACTGTTGCCCAGAAGCATAATACTGTAAACGGTACTGACTAGAGCC
ATCTTTTCAGGATTATCTTCGATCAGGTTGCAACgcttaaaaataaattc
agttGTGACTCCATTATGGTGAATCAACTCGGGCACAATGACCGATGTTT
TTAACATTCGATGATACGTGTCCTCTAAGTCAGGGAAAACCTTGATGAGG
TTCCGACAATCCTTCACTTTcaactttttgataatttccATCCATACTTC
GCATGGGAAAGTAGATGAATTGACGCATGCGCGCGACAGACTATCATCAA
GTATTTCAGAATCAACTGaagaaacttttctatttttgtccTCACTCAAA
CTCCCAACACCCTGGCTATCGATATCATCTTGACTTTTCGATTTCTTAGG
ATAACAATACGTCTCATTCAAAATATGTTCTAATAATTCGCGCATGCGTT
CTTCATCGGGATAATCATAGTCATCATCATTTATGTAATATTTCCCCTCG
TCTCTCAGAGAACGATAATGATCATTGAACTCCTCACGCATGATGACATG
GGCGTTTCGGGCGCAAGCTTCGTACGCCCTCGACTCCTCTTCTGGGATGA
AATACTGAAACTGCTCTGCTTCACGCCGTTCGAACATCAAATCACattta
aggaaatattttgaGTGGTCAGTGTCTTTTGCGAGGTCTTTGTGCTTATA
TATGATATCTTGTTTAAAGAAGATGACATCCCCTGATTTAGGTTTGTAGC
TGATTGTTCTGAGAAGACCAGTGTTCTCGTATTTCttgatcaatgttttg
atgGTTTCATTCTTTCGATTGATTGCATCATCTTCAGATTGCAGCAAGAT
TGTGAATTCTACTTCACCGCCATTCAGTTCATCAGAAAGGAAAATCAAAC
AAGTGTAAAGTGAACGACGGTCATGAGTAGGACAGAATTGTGCGTCGAGT
TGGTTAGGTTTTGAGTAACGATTGGAATGTCTATGAAAAGTCAAACCATG
ATGTAATCCTTCTAGTTCCCAGCTCCCTCGTTGAACATCAAAACCTAACA
TGGCAGGCTTCTGGTTTTGGCGAACAAAATCTGTCCTCAAACTCTCCCAT
ACAGTATCTGCAAATTGTTTATCGTAAATAACGGATGTTATggttgggct
tttttcttcgtTTGTTAGAGAAAACTCCTTATTCACATTCTCCAATCGAG
CAACCATCTCTTCGCATTGCTCTGTAGATAAGACAGGTTTTGTGGATTTG
AAAACTCCACCAGCAAGTCTAATTAGTGTAGTTTCTCGCAAATTTTGAGT
CTGCTTCTCTTCGCCAAAGAGATGGAATAACTTCCCATGATTGCCGCTAC
TGAGAGGTGTGTCGCTCATCAGATAGGACTTTCCAAGTGCGTCCATGGTA
ACTTGGTAACCATCCACAAACTTGATGTTACTATACAGTGGAACTTGTGG
TTCTTCATTAACATGAAtcatttttatgttgatttttgCGGTCTGGAATG
GGAAAAGGAGAGTGATGAAATATtagtctacacgtttttttgataagaaa
aaCTTAAGAACACAAT Run BLAST on NCBI protein sequence of TCONS_00025522-protein >TCONS_00025522-protein ID=TCONS_00025522-protein|Name=TCONS_00025522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=876bp
MIHVNEEPQVPLYSNIKFVDGYQVTMDALGKSYLMSDTPLSSGNHGKLFH
LFGEEKQTQNLRETTLIRLAGGVFKSTKPVLSTEQCEEMVARLENVNKEF
SLTNEEKSPTITSVIYDKQFADTVWESLRTDFVRQNQKPAMLGFDVQRGS
WELEGLHHGLTFHRHSNRYSKPNQLDAQFCPTHDRRSLYTCLIFLSDELN
GGEVEFTILLQSEDDAINRKNETIKTLIKKYENTGLLRTISYKPKSGDVI
FFKQDIIYKHKDLAKDTDHSKYFLKCDLMFERREAEQFQYFIPEEESRAY
EACARNAHVIMREEFNDHYRSLRDEGKYYINDDDYDYPDEERMRELLEHI
LNETYCYPKKSKSQDDIDSQGVGSLSEDKNRKVSSVDSEILDDSLSRACV
NSSTFPCEVWMEIIKKLKVKDCRNLIKVFPDLEDTYHRMLKTSVIVPELI
HHNGVTTEFIFKRCNLIEDNPEKMALVSTVYSIMLLGNSNREKDYLIMFD
RDQKQAEEITLEEILHCLFTDGELPDGDLFVVTQQDVDVKQPIRDLFYSV
DRRFMTQYYRMNFFGVDVNAEKKCSFEITKEYDNARKTHIMFDQYRHNER
IESTLEKLTGWDRTFRLYRDNKNREEESLEKFQYQFEPGLTSQETLNGIS
RFLPYPDSSEKDEENTYLFELVERERNWRLADYPSALIVRKLDKPASVNR
EDYVDEQISWKLSNNCTTHVFNRFILNNDKLDHFKIDEDYEYVENSDDDD
EDGEEYKWEKYDGSSLCIIMRDNCLNRKLMMERVEMRYKELKGKFYVDSF
IVKLRGCGSEKCKGSIDLQRHPLSLDPKWISRPYDFTVNEYTDIVAFPLI
GHMHLTYVKEENIIRFFTTYGNLIAF Run BLAST on NCBI transcript from alignment at sc0000538:79316..82281 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025522 ID=TCONS_00025522|Name=TCONS_00025522|organism=Clytia hemisphaerica|type=transcript|length=2966bp|location=Sequence derived from alignment at sc0000538:79316..82281 (Clytia hemisphaerica)
ATTGTGTTCTTAAGtttttcttatcaaaaaaacgtgtagactaATATTTC
ATCACTCTCCTTTTCCCATTCCAGACCGcaaaaatcaacataaaaatgaT
TCATGTTAATGAAGAACCACAAGTTCCACTGTATAGTAACATCAAGTTTG
TGGATGGTTACCAAGTTACCATGGACGCACTTGGAAAGTCCTATCTGATG
AGCGACACACCTCTCAGTAGCGGCAATCATGGGAAGTTATTCCATCTCTT
TGGCGAAGAGAAGCAGACTCAAAATTTGCGAGAAACTACACTAATTAGAC
TTGCTGGTGGAGTTTTCAAATCCACAAAACCTGTCTTATCTACAGAGCAA
TGCGAAGAGATGGTTGCTCGATTGGAGAATGTGAATAAGGAGTTTTCTCT
AACAAacgaagaaaaaagcccaaccATAACATCCGTTATTTACGATAAAC
AATTTGCAGATACTGTATGGGAGAGTTTGAGGACAGATTTTGTTCGCCAA
AACCAGAAGCCTGCCATGTTAGGTTTTGATGTTCAACGAGGGAGCTGGGA
ACTAGAAGGATTACATCATGGTTTGACTTTTCATAGACATTCCAATCGTT
ACTCAAAACCTAACCAACTCGACGCACAATTCTGTCCTACTCATGACCGT
CGTTCACTTTACACTTGTTTGATTTTCCTTTCTGATGAACTGAATGGCGG
TGAAGTAGAATTCACAATCTTGCTGCAATCTGAAGATGATGCAATCAATC
GAAAGAATGAAACcatcaaaacattgatcaaGAAATACGAGAACACTGGT
CTTCTCAGAACAATCAGCTACAAACCTAAATCAGGGGATGTCATCTTCTT
TAAACAAGATATCATATATAAGCACAAAGACCTCGCAAAAGACACTGACC
ACtcaaaatatttccttaaatGTGATTTGATGTTCGAACGGCGTGAAGCA
GAGCAGTTTCAGTATTTCATCCCAGAAGAGGAGTCGAGGGCGTACGAAGC
TTGCGCCCGAAACGCCCATGTCATCATGCGTGAGGAGTTCAATGATCATT
ATCGTTCTCTGAGAGACGAGGGGAAATATTACATAAATGATGATGACTAT
GATTATCCCGATGAAGAACGCATGCGCGAATTATTAGAACATATTTTGAA
TGAGACGTATTGTTATCCTAAGAAATCGAAAAGTCAAGATGATATCGATA
GCCAGGGTGTTGGGAGTTTGAGTGAggacaaaaatagaaaagtttcttCA
GTTGATTCTGAAATACTTGATGATAGTCTGTCGCGCGCATGCGTCAATTC
ATCTACTTTCCCATGCGAAGTATGGATggaaattatcaaaaagttgAAAG
TGAAGGATTGTCGGAACCTCATCAAGGTTTTCCCTGACTTAGAGGACACG
TATCATCGAATGTTAAAAACATCGGTCATTGTGCCCGAGTTGATTCACCA
TAATGGAGTCACaactgaatttatttttaagcGTTGCAACCTGATCGAAG
ATAATCCTGAAAAGATGGCTCTAGTCAGTACCGTTTACAGTATTATGCTT
CTGGGCAACAGTAACCGCGAGAAGGACTACTTGATTATGTTTGACCGGGA
TCAAAAGCAGGCTGAAGAGATCACCTTGGAGGAGATTTTACATTGCCTTT
TTACTGATGGCGAGCTGCCGGATGGTGATTTGTTTGTCGTTACACAACAG
GATGTGGACGTGAAACAACCGATACGCGATTTGTTTTACAGTGTCGATCG
AAGGTTCATGACGCAGTATTATAGGATGAACTTCTTTGGAGTCGACGTCA
ACGCAGAGAAGAAATGCTCATTTGAAATCACAAAGGAATATGATAATGCA
CGGAAGACGCACATCATGTTCGATCAATATAGACATAATGAGCGGATCGA
AAGTACTCTAGAAAAGCTGACAGGTTGGGATCGTACTTTCCGCTTATATC
GGGACAACAAAAATCGGGAAGAAGAAAGTTTAGAGAAATTCCAATACCAA
TTCGAACCTGGTTTGACGTCCCAAGAAACTTTAAATGGTATTAGCAGATT
CTTACCTTACCCTGACAGCAGTGAAAAGGACGAAGAAAACACTTATCTTT
TTGAGCTCGTCGAGCGGGAGAGAAATTGGCGTCTTGCGGACTACCCGAGT
GCTTTGATAGTCCGTAAGCTGGACAAACCGGCGTCCGTGAATCGGGAAGA
TTATGTTGATGAACAGATATCGTGGAAGTTGAGCAATAATTGTACAACAC
ACGTGTTTAATCGGTTCATTTTGAATAATGACAAATTAGATCATTTTAAA
ATCGACGAAGACTATGAATACGTCGAAAATtccgatgatgatgatgagga
cGGTGAGGAATACAAGTGGGAAAAATATGACGGAAGCAGCCTCTGTATTA
TCATGAGGGATAATTGTCTTAACCGAAAGTTAATGATGGAACGGGTCGAA
ATGCGATACAAAGAATTAAAGGGCAAGTTTTATGTCGATAGCTTCATTGT
GAAATTAAGGGGCTGCGGTAGTGAAAAGTGTAAAGGCAGTATCGATCTCC
AACGACATCCGCTGAGCCTTGACCCAAAATGGATTTCACGCCCGTATGAC
TTCACCGTCAATGAGTATACGGACATTGTGGCATTCCCGTTAATCGGACA
CATGCATTTGACGTATgtgaaagaagaaaatattattCGCTTTTTCACGA
CGTACGGCAATTTAATTGCTTTTTAAGTGGACTTTCTAAGACATTTCATT
GAGATAGACATAttataagcagatattcaataggtagatattggttattg
agatttattaaccctgtttttgcctacaggtatataataataatcGATAT
CACATTGTAGTAGAATATTATATACATCACATCAAGATACTTTATGGGTT
ttaagatctttttcttggtactCTAACGGGTTGTTGTATACATTGCACCT
TTCATTATAATAGCCT Coding sequence (CDS) from alignment at sc0000538:79316..82281 >TCONS_00025522 ID=TCONS_00025522|Name=TCONS_00025522|organism=Clytia hemisphaerica|type=CDS|length=2631bp|location=Sequence derived from alignment at sc0000538:79316..82281 (Clytia hemisphaerica)
atgaTTCATGTTAATGAAGAACCACAAGTTCCACTGTATAGTAACATCAA
GTTTGTGGATGGTTACCAAGTTACCATGGACGCACTTGGAAAGTCCTATC
TGATGAGCGACACACCTCTCAGTAGCGGCAATCATGGGAAGTTATTCCAT
CTCTTTGGCGAAGAGAAGCAGACTCAAAATTTGCGAGAAACTACACTAAT
TAGACTTGCTGGTGGAGTTTTCAAATCCACAAAACCTGTCTTATCTACAG
AGCAATGCGAAGAGATGGTTGCTCGATTGGAGAATGTGAATAAGGAGTTT
TCTCTAACAAacgaagaaaaaagcccaaccATAACATCCGTTATTTACGA
TAAACAATTTGCAGATACTGTATGGGAGAGTTTGAGGACAGATTTTGTTC
GCCAAAACCAGAAGCCTGCCATGTTAGGTTTTGATGTTCAACGAGGGAGC
TGGGAACTAGAAGGATTACATCATGGTTTGACTTTTCATAGACATTCCAA
TCGTTACTCAAAACCTAACCAACTCGACGCACAATTCTGTCCTACTCATG
ACCGTCGTTCACTTTACACTTGTTTGATTTTCCTTTCTGATGAACTGAAT
GGCGGTGAAGTAGAATTCACAATCTTGCTGCAATCTGAAGATGATGCAAT
CAATCGAAAGAATGAAACcatcaaaacattgatcaaGAAATACGAGAACA
CTGGTCTTCTCAGAACAATCAGCTACAAACCTAAATCAGGGGATGTCATC
TTCTTTAAACAAGATATCATATATAAGCACAAAGACCTCGCAAAAGACAC
TGACCACtcaaaatatttccttaaatGTGATTTGATGTTCGAACGGCGTG
AAGCAGAGCAGTTTCAGTATTTCATCCCAGAAGAGGAGTCGAGGGCGTAC
GAAGCTTGCGCCCGAAACGCCCATGTCATCATGCGTGAGGAGTTCAATGA
TCATTATCGTTCTCTGAGAGACGAGGGGAAATATTACATAAATGATGATG
ACTATGATTATCCCGATGAAGAACGCATGCGCGAATTATTAGAACATATT
TTGAATGAGACGTATTGTTATCCTAAGAAATCGAAAAGTCAAGATGATAT
CGATAGCCAGGGTGTTGGGAGTTTGAGTGAggacaaaaatagaaaagttt
cttCAGTTGATTCTGAAATACTTGATGATAGTCTGTCGCGCGCATGCGTC
AATTCATCTACTTTCCCATGCGAAGTATGGATggaaattatcaaaaagtt
gAAAGTGAAGGATTGTCGGAACCTCATCAAGGTTTTCCCTGACTTAGAGG
ACACGTATCATCGAATGTTAAAAACATCGGTCATTGTGCCCGAGTTGATT
CACCATAATGGAGTCACaactgaatttatttttaagcGTTGCAACCTGAT
CGAAGATAATCCTGAAAAGATGGCTCTAGTCAGTACCGTTTACAGTATTA
TGCTTCTGGGCAACAGTAACCGCGAGAAGGACTACTTGATTATGTTTGAC
CGGGATCAAAAGCAGGCTGAAGAGATCACCTTGGAGGAGATTTTACATTG
CCTTTTTACTGATGGCGAGCTGCCGGATGGTGATTTGTTTGTCGTTACAC
AACAGGATGTGGACGTGAAACAACCGATACGCGATTTGTTTTACAGTGTC
GATCGAAGGTTCATGACGCAGTATTATAGGATGAACTTCTTTGGAGTCGA
CGTCAACGCAGAGAAGAAATGCTCATTTGAAATCACAAAGGAATATGATA
ATGCACGGAAGACGCACATCATGTTCGATCAATATAGACATAATGAGCGG
ATCGAAAGTACTCTAGAAAAGCTGACAGGTTGGGATCGTACTTTCCGCTT
ATATCGGGACAACAAAAATCGGGAAGAAGAAAGTTTAGAGAAATTCCAAT
ACCAATTCGAACCTGGTTTGACGTCCCAAGAAACTTTAAATGGTATTAGC
AGATTCTTACCTTACCCTGACAGCAGTGAAAAGGACGAAGAAAACACTTA
TCTTTTTGAGCTCGTCGAGCGGGAGAGAAATTGGCGTCTTGCGGACTACC
CGAGTGCTTTGATAGTCCGTAAGCTGGACAAACCGGCGTCCGTGAATCGG
GAAGATTATGTTGATGAACAGATATCGTGGAAGTTGAGCAATAATTGTAC
AACACACGTGTTTAATCGGTTCATTTTGAATAATGACAAATTAGATCATT
TTAAAATCGACGAAGACTATGAATACGTCGAAAATtccgatgatgatgat
gaggacGGTGAGGAATACAAGTGGGAAAAATATGACGGAAGCAGCCTCTG
TATTATCATGAGGGATAATTGTCTTAACCGAAAGTTAATGATGGAACGGG
TCGAAATGCGATACAAAGAATTAAAGGGCAAGTTTTATGTCGATAGCTTC
ATTGTGAAATTAAGGGGCTGCGGTAGTGAAAAGTGTAAAGGCAGTATCGA
TCTCCAACGACATCCGCTGAGCCTTGACCCAAAATGGATTTCACGCCCGT
ATGACTTCACCGTCAATGAGTATACGGACATTGTGGCATTCCCGTTAATC
GGACACATGCATTTGACGTATgtgaaagaagaaaatattattCGCTTTTT
CACGACGTACGGCAATTTAATTGCTTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025522-exon-sc0000538-1491911889:79316..82281 | TCONS_00025522-exon-sc0000538-1491911889:79316..82281 | Clytia hemisphaerica | exon |
| TCONS_00025522-exon-sc0000538-1510915933:79316..82281 | TCONS_00025522-exon-sc0000538-1510915933:79316..82281 | Clytia hemisphaerica | exon |
| TCONS_00025522-exon-sc0000538-1575043694:79316..82281 | TCONS_00025522-exon-sc0000538-1575043694:79316..82281 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000538 | supercontig | sc0000538:79316..82281 . |
Blast
The following BLAST results are available for this feature:
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