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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025521 ID=TCONS_00025521|Name=TCONS_00025521|organism=Clytia hemisphaerica|type=transcript|length=2719bp
TTTAGCAGGGGTTCAATAACcttaaaactaaataaaaagaaTTGATAAAT
ATCATCTGAAAATCATACTGGTGGACAACACAATTGGCAAAGATGAGCAT
CATCTCCAATGTAAGTCTCTATGTACACGACAAAAATTTAGTCGACGGAA
ATTTGAAATCGAAGTCTACATCAGATCTTCATAAACAGACGGCTCCCCAT
ACCGCCGTATCAAAAGATGAACCAATACAACAAAACCATTTTATAAACGC
CCATCCTAAACCACCTACGGTGGCGTCAAATGGAAATACCACCCTCCAAA
TACCAACAATCGTTACAACTTCAAGCACAAATCCAGCCTCCCCTGCTGCT
TCGCCTTTGCTTCAGAGAAGTTCAAGATTTTTAGCGGGACTTTCAGGAAA
TGGTACGCAATTTAATGCCAATCAATTTACATTTAATGGCCGTAAACGAA
GTATGAGCCACTctgatttctcaaatttctacgATTAGTTAGTTGGTAGA
TTTGGAAAATTGTGGAAAAATTGGTACGTTTGAGATTACAGAGGGTCAAA
AATTATGGACTACGAGTATTGAATTTTATCCAAAgtttaaaagaagaaat
cttCGCATTGCCAACTACAACTAAACGCTAGAGGCTACTGTTAAACTTTG
GGACAAAGCTAGTTTCCTTTGTAAAGATAAATAACCAAAACGAAACTAGG
AACACAGGGGGGGGGGNCCGTAAACGAAGTATGAGCCACTctgatttctc
aaatttctacgATTAGTTAGTTGGTAGATTTGGAAAATTGCGTGGAAAAA
TTGGTACGATTGAGATTACAGAGGGTCAAAAATTATGGACTACGAGTAAT
GAATTTTAGCCAAAgtttaaaagaagaaatcttCGCATTGTCAACTGCAA
CTAAACGCTAGAGGCTACTGTTAAACTTTGGAACAAAGCTAGTTTCCTTT
GTAAAGATAAATAACCAAAACGAAACTAGGAACACGGAAATGATAATTAT
TTTAACTTGGGATTTTACATATTTTatgataatttcaatttcattaaatt
AAGAATTCGAGACTACGTACTTTGTACAGGGGCGTTTCAAGGTTTACGGT
GACACGGTATAGGCCTTTTTTCTGtccggtatttcgatattttgaaggaa
aatgtacaaaattCCGGTATTTGAAATGCTGCCGGTGACggtaaattgcc
taaaaatgCTTCGGTGTTTCggtaaattcaaaatatttctgaaTTGCATT
TTCATAAAACAACTTTTAAAAATCGCCTGTGGCgcaaaactttcataaaa
tttagaaaatgacaCCCCTGATTTCTAATTCCATCAACTTTGACACAGTA
TGCCACTTCAGCCCCAAAGCAGTAGCGTGGCGACAAGGGGTAAGAGGGGC
AACAGCTCCCCTCCAGTGGCGACTGTTCGAGGGGGCGCCGAATGTTCCAT
CCACTATCCTTTGAACAATAAATTTTCACAACCTTCGATTAGAAAGTGAT
ACTATCTGTTAAAGCACTTGCAAATGTCTATTTTTTTGGTTAGAgtagaa
tttgataaaaaatcattaacgattatcaaaaccaaaatgGACGGACTAAA
CCAATTGATGGAGCCCCTTTCCCTATTTTTACATTGCAAAACGAATTTTT
AGCCATAAGAGAGGACTTTTGGATTAGCTAAAAAAATCTTCGCGCTGTGC
GGATTGCCTTTTCTCGATTCGCTTCCTCAGTCTTGATAAAGCAGCCATGC
TAATGCTTTTCCCCCCAAAGGAAGGTGATGAGATAGGTACTGAATAATTC
TTCCGATGAACTCAAATGAGAACTTCAACATTTCTATGAAAAGATGCTAT
TGAGACACtctgatatatAGTAGAACAGTCTAAAACATAGTGCTTTtagt
caaataaaaaagtgtgaaaatcgaaattttctcctTTCGGCACAAACCAT
GGTTGCACCTCCTCACTCAGCCCAAGCCACTAAACTTTGCTTCCTCTAAG
CTATTTGGACGTTGAAATTAAATCGTTCGTCTGATGAAGATAACAGTCGA
AAAATGAAAGTTACAACAGGGTATCCCTTGCTTCTTATTTCATCAACAAT
TCTTGCAGTTGAAATGCCTTTCCTCACGAATAAGGCTTAACATAGATTCT
AAAAATTGTCGGTGACGCTAATTGGAGTTTATTTTGTCCGGTATTTCGGG
AAAAAATTGTCGGTAATCTGGTATTGAGTACCCGTGAAACCCCCCTGTAA
ATGTTCATGCTTTGCTTAAACTTTCTTAGTTGTATAATTTTATGGAATAC
TTATTTTTCGGTGATACttatttttggtaaattttcaaTGCATTAATCCT
TTGCATTAGATGTTTAACGTTTGCATTATTGTACATACACCTTTCTATGG
AAAAATTCATTTGAAATGAATATTCGAAAACTATCATATTGTTAATAATT
TCACACTTTATTtactttcaataaaatttcgtattttgattAATCCTAGT
TCCTggtatgattttgattttgataaaggATTTAGTGGTAAAAAAAGTTA
ATGGGGATTAAAAATATGATCTTTGCATGACGATGCTTAGAATATAGCAT
GCTATCAAGCTTGTAAATTGTTTATTTATATGATAAAAGTCAGCACTTGA
GGTATTTTAACACTCAATTTTAACATTATTTAGAAACCAGTCAGTAACAT
GATGGCTTATCCAAaacag Run BLAST on NCBI protein sequence of TCONS_00025521-protein >TCONS_00025521-protein ID=TCONS_00025521-protein|Name=TCONS_00025521-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MSIISNVSLYVHDKNLVDGNLKSKSTSDLHKQTAPHTAVSKDEPIQQNHF
INAHPKPPTVASNGNTTLQIPTIVTTSSTNPASPAASPLLQRSSRFLAGL
SGNGTQFNANQFTFNGRKRSMSHSDFSNFYD Run BLAST on NCBI transcript from alignment at sc0000538:63993..66711 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025521 ID=TCONS_00025521|Name=TCONS_00025521|organism=Clytia hemisphaerica|type=transcript|length=2719bp|location=Sequence derived from alignment at sc0000538:63993..66711 (Clytia hemisphaerica)
ctgttTTGGATAAGCCATCATGTTACTGACTGGTTTCTAAATAATGTTAA
AATTGAGTGTTAAAATACCTCAAGTGCTGACTTTTATCATATAAATAAAC
AATTTACAAGCTTGATAGCATGCTATATTCTAAGCATCGTCATGCAAAGA
TCATATTTTTAATCCCCATTAACTTTTTTTACCACTAAATcctttatcaa
aatcaaaatcataccAGGAACTAGGATTaatcaaaatacgaaattttatt
gaaagtaAATAAAGTGTGAAATTATTAACAATATGATAGTTTTCGAATAT
TCATTTCAAATGAATTTTTCCATAGAAAGGTGTATGTACAATAATGCAAA
CGTTAAACATCTAATGCAAAGGATTAATGCAttgaaaatttaccaaaaat
aaGTATCACCGAAAAATAAGTATTCCATAAAATTATACAACTAAGAAAGT
TTAAGCAAAGCATGAACATTTACAGGGGGGTTTCACGGGTACTCAATACC
AGATTACCGACAATTTTTTCCCGAAATACCGGACAAAATAAACTCCAATT
AGCGTCACCGACAATTTTTAGAATCTATGTTAAGCCTTATTCGTGAGGAA
AGGCATTTCAACTGCAAGAATTGTTGATGAAATAAGAAGCAAGGGATACC
CTGTTGTAACTTTCATTTTTCGACTGTTATCTTCATCAGACGAACGATTT
AATTTCAACGTCCAAATAGCTTAGAGGAAGCAAAGTTTAGTGGCTTGGGC
TGAGTGAGGAGGTGCAACCATGGTTTGTGCCGAAaggagaaaatttcgat
tttcacacttttttatttgactaAAAGCACTATGTTTTAGACTGTTCTAC
TatatatcagaGTGTCTCAATAGCATCTTTTCATAGAAATGTTGAAGTTC
TCATTTGAGTTCATCGGAAGAATTATTCAGTACCTATCTCATCACCTTCC
TTTGGGGGGAAAAGCATTAGCATGGCTGCTTTATCAAGACTGAGGAAGCG
AATCGAGAAAAGGCAATCCGCACAGCGCGAAGATTTTTTTAGCTAATCCA
AAAGTCCTCTCTTATGGCTAAAAATTCGTTTTGCAATGTAAAAATAGGGA
AAGGGGCTCCATCAATTGGTTTAGTCCGTCcattttggttttgataatcg
ttaatgattttttatcaaattctacTCTAACCAAAAAAATAGACATTTGC
AAGTGCTTTAACAGATAGTATCACTTTCTAATCGAAGGTTGTGAAAATTT
ATTGTTCAAAGGATAGTGGATGGAACATTCGGCGCCCCCTCGAACAGTCG
CCACTGGAGGGGAGCTGTTGCCCCTCTTACCCCTTGTCGCCACGCTACTG
CTTTGGGGCTGAAGTGGCATACTGTGTCAAAGTTGATGGAATTAGAAATC
AGGGGtgtcattttctaaattttatgaaagttttgcGCCACAGGCGATTT
TTAAAAGTTGTTTTATGAAAATGCAAttcagaaatattttgaatttaccG
AAACACCGAAGcatttttaggcaatttaccGTCACCGGCAGCATTTCAAA
TACCGGaattttgtacattttccttcaaaatatcgaaataccggaCAGAA
AAAAGGCCTATACCGTGTCACCGTAAACCTTGAAACGCCCCTGTACAAAG
TACGTAGTCTCGAATTCTTaatttaatgaaattgaaattatcatAAAATA
TGTAAAATCCCAAGTTAAAATAATTATCATTTCCGTGTTCCTAGTTTCGT
TTTGGTTATTTATCTTTACAAAGGAAACTAGCTTTGTTCCAAAGTTTAAC
AGTAGCCTCTAGCGTTTAGTTGCAGTTGACAATGCGaagatttcttcttt
taaacTTTGGCTAAAATTCATTACTCGTAGTCCATAATTTTTGACCCTCT
GTAATCTCAATCGTACCAATTTTTCCACGCAATTTTCCAAATCTACCAAC
TAACTAATcgtagaaatttgagaaatcagAGTGGCTCATACTTCGTTTAC
GGNCCCCCCCCCCTGTGTTCCTAGTTTCGTTTTGGTTATTTATCTTTACA
AAGGAAACTAGCTTTGTCCCAAAGTTTAACAGTAGCCTCTAGCGTTTAGT
TGTAGTTGGCAATGCGaagatttcttcttttaaacTTTGGATAAAATTCA
ATACTCGTAGTCCATAATTTTTGACCCTCTGTAATCTCAAACGTACCAAT
TTTTCCACAATTTTCCAAATCTACCAACTAACTAATcgtagaaatttgag
aaatcagAGTGGCTCATACTTCGTTTACGGCCATTAAATGTAAATTGATT
GGCATTAAATTGCGTACCATTTCCTGAAAGTCCCGCTAAAAATCTTGAAC
TTCTCTGAAGCAAAGGCGAAGCAGCAGGGGAGGCTGGATTTGTGCTTGAA
GTTGTAACGATTGTTGGTATTTGGAGGGTGGTATTTCCATTTGACGCCAC
CGTAGGTGGTTTAGGATGGGCGTTTATAAAATGGTTTTGTTGTATTGGTT
CATCTTTTGATACGGCGGTATGGGGAGCCGTCTGTTTATGAAGATCTGAT
GTAGACTTCGATTTCAAATTTCCGTCGACTAAATTTTTGTCGTGTACATA
GAGACTTACATTGGAGATGATGCTCATCTTTGCCAATTGTGTTGTCCACC
AGTATGATTTTCAGATGATATTTATCAAttctttttatttagttttaagG
TTATTGAACCCCTGCTAAA Coding sequence (CDS) from alignment at sc0000538:63993..66711 >TCONS_00025521 ID=TCONS_00025521|Name=TCONS_00025521|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0000538:63993..66711 (Clytia hemisphaerica)
CTAATcgtagaaatttgagaaatcagAGTGGCTCATACTTCGTTTACGGC
CATTAAATGTAAATTGATTGGCATTAAATTGCGTACCATTTCCTGAAAGT
CCCGCTAAAAATCTTGAACTTCTCTGAAGCAAAGGCGAAGCAGCAGGGGA
GGCTGGATTTGTGCTTGAAGTTGTAACGATTGTTGGTATTTGGAGGGTGG
TATTTCCATTTGACGCCACCGTAGGTGGTTTAGGATGGGCGTTTATAAAA
TGGTTTTGTTGTATTGGTTCATCTTTTGATACGGCGGTATGGGGAGCCGT
CTGTTTATGAAGATCTGATGTAGACTTCGATTTCAAATTTCCGTCGACTA
AATTTTTGTCGTGTACATAGAGACTTACATTGGAGATGATGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025521-exon-sc0000538-1491911889:63993..66711 | TCONS_00025521-exon-sc0000538-1491911889:63993..66711 | Clytia hemisphaerica | exon |
| TCONS_00025521-exon-sc0000538-1510915933:63993..66711 | TCONS_00025521-exon-sc0000538-1510915933:63993..66711 | Clytia hemisphaerica | exon |
| TCONS_00025521-exon-sc0000538-1575043694:63993..66711 | TCONS_00025521-exon-sc0000538-1575043694:63993..66711 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000538 | supercontig | sc0000538:63993..66711 . |
Blast
The following BLAST results are available for this feature:
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