TCONS_00025514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025514
Unique NameTCONS_00025514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1009

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025514 ID=TCONS_00025514|Name=TCONS_00025514|organism=Clytia hemisphaerica|type=transcript|length=1009bp
TGTGAACCTGCTGAAGATTTAGCAATGAAATCGAATTGTCGATATTCCTT
CGATACTGGCACGACTTGGAAAGAGATCACACCATTTGTTTCCCAATTGA
AGTTCTTCGTACCTTCAGAGGATTTCTTTTATGGTTATTGCAacaaagtg
aaatatttttgtacatgGAACATTCAAACCTTACGATTGGATTATATCGA
AGAGTCGCTCTTCAACGAGAAACTACTTGACTTGAATACACAAGCAGTAA
CAGGGTTAGATGATATGACTTTAGTCCCACAACCTTCAGCGGACGGTGAT
GTCCCAACGCTAGGGTtgAGCTCATTGGGCATACACAAACAAAACGGTGG
AGGGAGCTGGGATCTAACCTACATCTGGTTAAATTGATGCGATTGCCATA
AGCCTCGATGACTATCCCAGGTATCCATACCACAACACAATGGTGAGGTG
AGATTTAATGGACATTAATGGTTCACACCAAATTAACACTTGGCAAAAAA
CTTCGAGACGAATCCCAGATTTTTAGGACTAATCATCCTCTCTAACGTCA
TCAACCAGAAGTAATTCAAAATACACAGAACTGGAAGGATGACGATTCTC
AGTTTTCGAATGGATAGTACAATAAGAGCTTGATATACTTCGTCGAATAG
GGTGAAAATATAAAACTGGTATCAAACTTCAAACTAAAGCTGATCTTAAT
TTCACCCAAGGACCGCTAGGGATTTTCGCTGGAAACCCCCATGATTTCGT
TAAGGTCCTACTTAGACGACACAATATATTGATgtacaatatttgacaat
atcgttttcggaccgtaatATAAGAAGTAAATAACATGTGCTctattatt
ataaaaaggaatttactttctgtaaacaatcccccatGTATTATTAGAAA
ATTGCAAatcaagctgacaatatattgtggacaccttttcaatatattgc
cggcactcAGCAATTGCCTGACATTATATTGTGAGGTGTATGTAGCCCGT
GAAATTGAT
Run BLAST on NCBI

transcript from alignment at sc0000538:200867..204611-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025514 ID=TCONS_00025514|Name=TCONS_00025514|organism=Clytia hemisphaerica|type=transcript|length=3745bp|location=Sequence derived from alignment at sc0000538:200867..204611- (Clytia hemisphaerica)
TGTGAACCTGCTGAAGATTTGTAAGTGTTTAGTTGAGATAGTTTATCAGA
AGATCTCCTGAGGGTTTTTCAACGTAAATACAACATGTGAAAATTGGTTA
TCCTGTATAGAAAACTAAAAATCTTCATCATACTTTTCGGCCTCTTCTAG
ACATAGCAAAATCTTTTTTTTCATCTTTTTGTTTATTTAATTTTGTAGAG
CAATGAAATCGAATTGTCGATATTCCTTCGATACTGGCACGACTTGGAAA
GGTAATGATACTTTTTTATAATTGCCTTCTCCTAATGTGTAAACCATTTC
TATCCGAATACTATGTCATATTAATTGGTGTGCCCCTTTTTCAGCACTGA
AAAAAGTTACTACTAGTGGTAGTGGTGCAGCAAAAATTTTCCAAAACGAT
AGATAATAGTCCCATTGAGTAACTACACGGCCCTCTGCCAACTCAGCAAA
TTGGACTTCAACACCACTCTCCCCTCTCTTTGAGGCTCAAGATCTTTTCG
AAAGCTAAAGAAATTCTTATATACATATATAGACGATTATCAAATCATGA
AGAACGGTGAAGAAAATAGTGCTCAATAACAAGTAGAGCTAAATCATTTC
ATATATTTCCTCTTTTTAATTTCTGAAGAGAAATATATGAAATGATATAG
ACGATTATGTTAGATTGAAGCAATACTGTCTATTTGTGAATTCCAATACC
CTTTCTTCTTCCTGTTACAGAGATCACACCATTTGTTTCCCAATTGAAGT
TCTTCGTACCTTCAGAGGATTTCTTTTATGGTTATTGCAACAAAGTGAAA
TATTTTTGTACATGGAACATTCAAACCTTACGATTGGATTATATCGAAGA
GTCGCTCTTCAACGAGAAACTACTTGACTTGAATACACAAGCAGTAACAG
GGTTAGATGATATGACTTTAGTCCCACAACCTTCAGCGGACGGTGATGTC
CCAACGCTAGGGTGTAAGTAATTTCTAATGTTATTTTTCCAACCTTTAAT
GCATGTTCAACTGAAAATAAATAACCGAATGTCGTTTGATAGGGTTTTAG
CCTGGGGATTTTAGTGAGAAGTTTGGAAAGCAATCTTTGATAGACTTTTA
AGGTAGGATCAAACCTTTAAAAAGTACACTTCAAAAAAACAATATTGAAT
AATATTTTAAAACGCATCAGATTGACTGATAGGTGCTGTTAAATCCTATG
CTTTCTTTGGTTATCTTGAAGTGAATTGTTTAAAATTGAGAATAATTGTT
TTTTCCTGACCAGAAAGTTCTTGAAAGAAAAACCAAAGATGATCTCTGCA
TCTCATTAATTCATCACTTCTCTCATTTTTTTTATAGTGAGCTCATTGGG
CATACACAAACAAAACGGTGGAGGGAGCTGGGATCTAACCTACATCTGGT
TAAATTGATGCGATTGTCATAAACCTCANAAGTCATATTAAAATCCTACC
AGGTGAGTGTTGGTTGAGCTGCTAGAGATTATCAAAATATTTTTCAATCT
TTATCCCAACCTAATTTTTCGGAGATTAAATCTCCAAGAACTTTGAGAAA
TCTCCAGAGAAGTTTGTTTAACATCATATACCCTCTTAAGTTTTTATCCA
AATCGGCAAATTTGCTGATAAGTAATTTTTTCGTGTTTTTTTTACATACA
GATTTTTCAAAACATTATTCGAAGTTGAGCATGAAGAGTTGGTTACATGT
GACAACCTCATCACAAGGACAAGTTCTTCTCGTTTGTGAACCTGCTGAAG
ATTTGTAAGTGTTTAATTAAGATAGTTTATCAGTTTTTCAACGTAAATAC
AACATGTGAAAATTGGTTATCTTGTATAGAAAACTAAAAATCTTCATCAT
ACTTTTCGGCCTCTTCTAGACATAGTAAAATCTTTTTTTTCATCTTTTTG
TTTATTTAATTTTGTAGAGCAATGAAATCCAATTGTCGATATTCCTTCGA
TACTGGCACGACTTGGAAAGGTAATGATACTTTTTTATAATTGCCTTCTC
ATAATGTGTAAACCGTTTCTATCCGAATACTATGGCAAATTGGTGTACCC
CTTTTTCAGCACTGAAAAAAGTTACTGCTAGTGGTAGTGGTGCAGCTAAA
ATTTTCCGAAACGATAGATAATAGTCCCATTGAGTAACTGCATGTCCCCT
CTGCCAATTCAGCAAATTGGATGGAGAAACTCCAACACCACTCTCCCCTC
TCTTTGAGGCTCAAGATCTTTTCGAAAGCTAAAGAAATTCTTATATACAT
ATATAGACGATTATCAAATCATGAAGAACGGTGAAGAAAATAGTGCTCAA
TAACAAGTAGAGCTAAATCATTTCATATATTTCCTCTTTTTAATTTCTGA
AGAGAAATATATGAAATGATATAGACGATTATGTTAGATTGAAGCAATAC
TGTCTATTTGTGAATTCCAATACCCTTTCTTCTTCCTGTTACAGAGATCA
CACCATTTGTTTCCCAATTGAAGTTCTTCGTACCTTCAGAGGATTTCTTT
TATGGTTATTGCAACAAAGTGAAATATTTTTGTACATGGAACATTCAAAC
CTTACGATTGGATTATATCGAAGAGTCGCTCTTCAACGAGAAACTACTTG
ACTTGAATACACAAGCAGTAACAGGGTTAGATGATATGACTTTAGTCCCA
CAACCTTCAGCGGACGGTGATGTCCCAACGCTAGGGTGTAAGTAATTTCT
AATGTTATTTTTCCAACCTTTAATGCATGTTCAACTGAAAATAAATAACC
GAAGGTCGTTTGAGCCTGGGGATTTTAGTGAGAAGTTTGGAAAGCAATCT
TTGATAGACTTTTAAGGTAGGATCAAACCTTTAAAAAATACAGTTCAAAA
AAACAATGTTGAATAATATTTTAAAACGCATCAGATTGACTGATAGGTGC
TGTTAAATCCTACGCTTTCTTCGGTTATCTTGAAGTGAATTGTTTAAAAT
TGAGAATAATTGTTTTTTCCTGACCAGAATGTTCTTGAAAGAAAAACCAA
AGATGATCTCTGCATCTCATTAATTCATCACTTCTCTCATTTTTTTTTAT
AGTGAGCTCATTGGGCATACACAAACAAAACGGTGGAGGGAGCTGGGATC
TAACCTACATCTGGTTAAATTGATGCGATTGCCATAAGCCTCGATGACTA
TCCCAGGTATCCATACCACAACACAATGGTGAGGTGAGATTTAATGGACA
TTAATGGTTCACACCAAATTAACACTTGGCAAAAAACTTCGAGACGAATC
CCAGATTTTTAGGACTAATCATCCTCTCTAACGTCATCAACCAGAAGTAA
TTCAAAATACACAGAACTGGAAGGATGACGATTCTCAGTTTTCGAATGGA
TAGTACAATAAGAGCTTGATATACTTCGTCGAATAGGGTGAAAATATAAA
ACTGGTATCAAACTTCAAACTAAAGCTGATCTTAATTTCACCCAAGGACC
GCTAGGGATTTTCGCTGGAAACCCCCATGATTTCGTTAAGGTCCTACTTA
GACGACACAATATATTGATGTACAATATTTGACAATATCGTTTTCGGACC
GTAATATAAGAAGTAAATAACATGTGCTCTATTATTATAAAAAGGAATTT
ACTTTCTGTAAACAATCCCCCATGTATTATTAGAAAATTGCAAATCAAGC
TGACAATATATTGTGGACACCTTTTCAATATATTGCCGGCACTCAGCAAT
TGCCTGACATTATATTGTGAGGTGTATGTAGCCCGTGAAATTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014326XLOC_014326Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025514-exon-sc0000538-1575043694:204592..204611TCONS_00025514-exon-sc0000538-1575043694:204592..204611Clytia hemisphaericaexon
TCONS_00025514-exon-sc0000538-1575043694:204361..204413TCONS_00025514-exon-sc0000538-1575043694:204361..204413Clytia hemisphaericaexon
TCONS_00025514-exon-sc0000538-1575043694:201925..202167TCONS_00025514-exon-sc0000538-1575043694:201925..202167Clytia hemisphaericaexon
TCONS_00025514-exon-sc0000538-1575043694:200867..201559TCONS_00025514-exon-sc0000538-1575043694:200867..201559Clytia hemisphaericaexon
TCONS_00025514-exon-sc0000538-1510915933:204592..204611TCONS_00025514-exon-sc0000538-1510915933:204592..204611Clytia hemisphaericaexon
TCONS_00025514-exon-sc0000538-1510915933:204361..204413TCONS_00025514-exon-sc0000538-1510915933:204361..204413Clytia hemisphaericaexon
TCONS_00025514-exon-sc0000538-1510915933:201925..202167TCONS_00025514-exon-sc0000538-1510915933:201925..202167Clytia hemisphaericaexon
TCONS_00025514-exon-sc0000538-1510915933:200867..201559TCONS_00025514-exon-sc0000538-1510915933:200867..201559Clytia hemisphaericaexon
TCONS_00025514-exon-sc0000538-1491911889:204592..204611TCONS_00025514-exon-sc0000538-1491911889:204592..204611Clytia hemisphaericaexon
TCONS_00025514-exon-sc0000538-1491911889:204361..204413TCONS_00025514-exon-sc0000538-1491911889:204361..204413Clytia hemisphaericaexon
TCONS_00025514-exon-sc0000538-1491911889:201925..202167TCONS_00025514-exon-sc0000538-1491911889:201925..202167Clytia hemisphaericaexon
TCONS_00025514-exon-sc0000538-1491911889:200867..201559TCONS_00025514-exon-sc0000538-1491911889:200867..201559Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000538supercontigsc0000538:200867..204611 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.00093004	0.0413588	0.0354646	0.149322	0	0.0144661	0.231183	0	0.00323577	0	0	0	0	0.261591	0	0.0342005	0.00919214	0	3.68773e-05	0	0.452479	0	0.136998	0	0	0.257713	0.637289	0.148623	0.101221
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top