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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025502 ID=TCONS_00025502|Name=TCONS_00025502|organism=Clytia hemisphaerica|type=transcript|length=1713bp CGCAGTATATTTACTTGATGTACTTAACaacttttcacaaaatttttctt cattttctctaAAAATCATTTGAAGatgtgaaaaaagaagaaaaacaatt tgCCCTCTGAAGTAAGATGAAGTCAAGATTATGGCCAGTGGATTTggttt ttcttgtatttttcattcaaatattTGGTGATGGATTATTGACTTATCAA GATGAAAATCTTATTGGAAACGACGTTATCAAACCAAGAATTTGCTCTGG GTTCAGTGACAATGAACATAAATCAAAATACATTTCCGAAATCGTAGCTA GTCTTGATCGCATCATAAATCACTTCTCTTTTTACACTGATCACCTGATC GCTGATGGTCTGTTTGGTTTAAGAATCGCTGAAGGCGTGTTGAAAAATAT CGTCCAATATGGAGACCGTTACAAACATCACAAAATTGAAGCATTACACT CTCGTTTATCAATGATCAATCAACTTTCATATGAAGGAATCACAAAGAGA AAATTACCTTATGATGTTCAATTCGATAAAATCATGAGGGAACCTTTTGA TCGATTGTGGCCATTCAAAAGCTTCAAAGATTTCAAGAAAGACATTGTGA AAGATTACATACATGGTATAGAcaaagattttgatgaagaCTTCAGTGAC CACTGTTTCGCGTTGTTGTTTGGGACAGCACCTCAATCGAAAGGTCGGCA ATGCGTGGTCACCAGAAAGTGTATTGAAGCAAACACCAGAGAAAAGACGG GCGATTATATGCTGACTCATCAGTTCCTTTATTTCGTTTTTGGATTCCAA TATAATTGTGACCAGCAAATAGCCAAAGCAATGGGAGGAAAACACAAGAT GGACGCGTTCTTCAGAAAGATGGCAGTAAATATAGCATATCAGTTACAAA TCAGTGGAAGTCCTAAAGATGCTTTGCTCCTGGATAGAGAACTAGAACAA GCGATGTTCTGTGCAATGTTTGGAATTGTGGAATGTACGTCACGTGATTT AACTCTTGATTTTATCAAGTATGTTGAAGCTGACGGTTGTACCAAGTTAT CGAAAGATCGAAAGACAAGAGAAAAACGCCAAGATCAATTTCTAGGTGGA TGTTCGCAACACACAGATGGATTAATGGCAGCATTCCTTTCTTTAAGTCT CAGATCTGCACTCATGCTACCCAATTGTAGTTAATGGAGAACTTAACAGA ACAATCTTTTAGGACATTTAGGATTCTATTCTGCATATCACAGCATTTTT GGCAAAAGTTCAAATCTCAAAATTACTGTCTGCAGAAACAGAGATTTCTT TTACTTTgctaatttcaaaactttgaggTTTGCCCTTGTTGTGTAGTGAG AAGGATGCTCAATCTCAAATGTTTTATGTTATCGCAAAGCAAAATAAATC TCAGTTTTCGCAGACTATTATATTGATATTTGGCTTTCTGTATCAATAGC AGCGATGTATTATAGGATATTCATACCCGGAGACGACACTGGAAGataaa tacatagaaaaaaTTTGTGACTCTCTTGGTGGTTTCAGCATAGAGGtaga aagaaaaacaggagtcgaacgtgtcggtaattggtcgttaaagtcttttg atttcttttataatatgtatcaaaagaaattctaagctcgcccgatgaaa taagactttttagtagaactcaagtttgctctgaacattctaattatCAG TATAGAAGATTCT Run BLAST on NCBI protein sequence of TCONS_00025502-protein >TCONS_00025502-protein ID=TCONS_00025502-protein|Name=TCONS_00025502-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
MKSRLWPVDLVFLVFFIQIFGDGLLTYQDENLIGNDVIKPRICSGFSDNE HKSKYISEIVASLDRIINHFSFYTDHLIADGLFGLRIAEGVLKNIVQYGD RYKHHKIEALHSRLSMINQLSYEGITKRKLPYDVQFDKIMREPFDRLWPF KSFKDFKKDIVKDYIHGIDKDFDEDFSDHCFALLFGTAPQSKGRQCVVTR KCIEANTREKTGDYMLTHQFLYFVFGFQYNCDQQIAKAMGGKHKMDAFFR KMAVNIAYQLQISGSPKDALLLDRELEQAMFCAMFGIVECTSRDLTLDFI KYVEADGCTKLSKDRKTREKRQDQFLGGCSQHTDGLMAAFLSLSLRSALM LPNCS Run BLAST on NCBI transcript from alignment at sc0000538:53119..57008+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025502 ID=TCONS_00025502|Name=TCONS_00025502|organism=Clytia hemisphaerica|type=transcript|length=3890bp|location=Sequence derived from alignment at sc0000538:53119..57008+ (Clytia hemisphaerica) CGCAGTATATTTACTTGATGTACTTAACaacttttcacaaaatttttctt
cattttctctaAAAATCATTTGAAGatgtgaaaaaagaagaaaaacaatt
tgCCCTCTGAAGTAAGATGAAGTCAAGATTATGGCCAGTGGATTTggttt
ttcttgtatttttcattcaaatattTGGTGATGGATTATTGACTTATCAA
GATGAAAATCTTATTGGAAACGACGTTATCAAACCAAGAATTTGCTCTGG
GTTCAGTGACAATGAACATAAATCAAAATACATTTCCGAAATCGTAGCTA
GTCTTGATCGCATCATAAATCACTTCTCTTTTTACACTGATCACCTGATC
GCTGATGGTCTGTTTGGTTTAAGAATCGCTGAAGGCGTGTTGAAAAATAT
CGTCCAATATGGAGACCGTTACAAACATCACAAAATTGAAGCATTACACT
CTCGTTTATCAATGATCAATCAACTTTCATATGAAGGAATCACAAAGAGA
AAATTACCTTATGATGTTCAATTCGATAAAATCATGAGGGAACCTTTTGA
TCGATTGTGGCCATTCAAAAGCTTCAAAGATTTCAAGAAAGACATTGTGA
AAGGTTTGGTATGAATTATGTTTTAAGTAAATGATCTAATTTCCTTTCAT
GCCCGGGGGGGttcaaaatgggttacggggatgcgccgctggtcagggta
ccttttttaacctccacgagtcccaggtagggtcgcaaaaaacaccaaaa
tagaaagatcagtccctcgtagggtgcctttttagaaaatttggggaaaa
agaaggaaattttagaaaactttaaaatttcagtcccattcaggatcact
ttttctacaaatttcgccaaatttttgaataaacgagtcccacgtagggt
ccatttttcgaaccttagcggagcacccccgtcggtcggtgagggtagta
ccccccccccgggtttcaCGCCGTCTAGCTCAAATTTTAGTTTACTATAA
TATTATGAACCTTTAGCCATTGATTACTTTGCAAATACTGAAAACACGCT
GGGCTGACATCGAAGCTGAACCTCTTACTAAAAGAACGAGATTGTGCTCT
ATGGCTAGCCAGTAGCAaggttaaagtttttttaaaagcGTCTTTGATAT
TATTGTTTCGGCATCAACTCAAAGAAAATTACTTTTCCTATCCGAAAATC
TTTATGGCGATAGCTGATCAATATCTTGTAATCAACCCCATCTTATCCAT
CCCTGTTTTAAAGCCACGGTGGAGATTTTCCACAatgggaaataattttt
ttatcggAATCCCAATAGGGATAAAGATTATATTCTTCCCAGCCTAAAAA
ATCCAGTAGGAATGGTCTTGGAGTGCAAAttattaccctgagtatcagag
gctaagttttcaaagaaaatagtaacctctgaagacaaataatagaaatt
ttatcgcccatgtgtcaatctaatcactgtagaaaaaatcaaagatgaag
agcaaatattaccatattaatgtctagcagactgtatcagtatgcagttt
actatttacgaattccccagaaacctccaagtgtagttgaaatgagttta
ctTCGAAAGAAaccttttacatgatccccaaatgtataacagtaattact
aaacttttaattatggaaatctcactttaattgaatcgaaataattgaca
gactttatgttatgattctctatcactgactctttttacaaagcattgat
gactttttgtaagttgtgttttcaacgacgggaataaaaatatcgactat
gatgctcatccaagatcttggatggtcgtcatggttacttttgtcttagc
tgattgcgcgatgaatagaatctcgattcgtcggcacagcgtaaatatat
gattttgagctgtgcttttcaccgTAGCAAATTAtccattgaatttcaat
tgGGATGAAATCGAAGTCATTTTGCTAATGCAGAATTGAAGGTTATTTTT
CCAACCGAGGATGAAATTGTGGTCGAAAATATTCCATGGGCGAGggtccc
accggggctgtgGCAAAAGGGTGTGATTCAGTAAGGTTAGATTCGGTTCT
TGATTTTAGGAATTTAAAACCCCGACCCAATTTCTTCCAGATTACATACA
TGGTATAGAcaaagattttgatgaagaCTTCAGTGACCACTGTTTCGCGT
TGTTGTTTGGGACAGCACCTCAATCGAAAGGTCGGCAATGCGTGGTCACC
AGAAAGTGTATTGAAGCAAACACCAGAGAAAAGACGGGCGATTATATGCT
GACTCATCAGTTCCTTTATTTCGTTTTTGGATTCCAATATAGTAAGTATA
TCTCTTTGTCTGCTGAGTTCCAAATATCGATATAAGAAAAACGGATGAAA
AGCAAgcactcttttttttaaacgTTGAGATCCCCGCCCCCTCTAATGCA
AAACAAATCATTTTAGATCTTTAATATGAATATACTACCCCGATGAAatt
gaaagagagaaaaattttgatcaccCCTTCAAACTCTTGAAGCTTCTTTC
TCTGACCATTCCTCAATAACGATAAGGCTACACAGAAAAAAACTGTTATT
ATTAACTATTGTTaacaatgaaattttaaatatcCGTTAGATTGTGACCA
GCAAATAGCCAAAGCAATGGGAGGAAAACACAAGATGGACGCGTTCTTCA
GAAAGATGGCAGTAAATATAGCATATCAGTTACAAATCAGTGGAAGTCCT
AAAGATGCTTTGCTCCTGGATAGAGAACTAGAACAAGCGATGTTCTGTGC
AATGTTTGGAATTGTGGAATGTACGTCACGTGATTTAACTCTTGATTTTA
TCAAGTATGTTGAAGCTGACGGTTGTACCAAGTTATCGAAAGATCGAAAG
ACAAGAGAAAAACGCCAAGATCAATTTCTAGGTAAGAATTGGTCCATCCT
CATCCACCCGTGTACTCCAGGCTtgatttacgttactgatggacgccTGA
GATTACCTTGGGTGTAGCAAATTCCATCTCTATGGCGCTATCAGTAAAGC
AATATGAAAAAGTCGGGATAGACTTTGTCTGAGatatattttcatttaaa
gCACAAAATTTAGCATTGGAttgttttcaatttgttttcaaattttggcc
aaatttcttCCTCGTATCGTTATAAAATTGTTGGCTATTTTCTATATTCT
TACCTATAAAGAGGAACGAGAATATAGACAAAACAGGAACATTCAAGCTA
TCTACTTTCAATTTCGTTTTAGGTGGATGTTCGCAACACACAGATGGATT
AATGGCAGCATTCCTTTCTTTAAGTCTCAGATCTGCACTCATGCTACCCA
ATTGTAGTTAATGGAGAACTTAACAGAACAATCTTTTAGGACATTTAGGA
TTCTATTCTGCATATCACAGCATTTTTGGCAAAAGTTCAAATCTCAAAAT
TACTGTCTGCAGAAACAGAGATTTCTTTTACTTTgctaatttcaaaactt
tgaggTTTGCCCTTGTTGTGTAGTGAGAAGGATGCTCAATCTCAAATGTT
TTATGTTATCGCAAAGCAAAATAAATCTCAGTTTTCGCAGACTATTATAT
TGATATTTGGCTTTCTGTATCAATAGCAGCGATGTATTATAGGATATTCA
TACCCGGAGACGACACTGGAAGataaatacatagaaaaaaTTTGTGACTC
TCTTGGTGGTTTCAGCATAGAGGtagaaagaaaaacaggagtcgaacgtg
tcggtaattggtcgttaaagtcttttgatttcttttataatatgtatcaa
aagaaattctaagctcgcccgatgaaataagactttttagtagaactcaa
gtttgctctgaacattctaattatCAGTATAGAAGATTCT Coding sequence (CDS) from alignment at sc0000538:53119..57008+ >TCONS_00025502 ID=TCONS_00025502|Name=TCONS_00025502|organism=Clytia hemisphaerica|type=CDS|length=4272bp|location=Sequence derived from alignment at sc0000538:53119..57008+ (Clytia hemisphaerica) ATGAAGTCAAGATTATGGCCAGTGGATTTggtttttcttgtatttttcat tcaaatattTGGTGATGGATTATTGACTTATCAAGATGAAAATCTTATTG GAAACGACGTTATCAAACCAAGAATTTGCTCTGGGTTCAGTGACAATGAA CATAAATCAAAATACATTTCCGAAATCGTAGCTAGTCTTGATCGCATCAT AAATCACTTCTCTTTTTACACTGATCACCTGATCGCTGATGGTCTGTTTG GTTTAAGAATCGCTGAAGGCGTGTTGAAAAATATCGTCCAATATGGAGAC CGTTACAAACATCACAAAATTGAAGCATTACACTCTCGTTTATCAATGAT CAATCAACTTTCATATGAAGGAATCACAAAGAGAAAATTACCTTATGATG TTCAATTCGATAAAATCATGAGGGAACCTTTTGATCGATTGTGGCCATTC AAAAGCTTCAAAGATTTCAAGAAAGACATTGTGAAAGATTACATACATGG TATAGAcaaagattttgatgaagaCTTCAGTGACCACTGTTTCGCGTTGT TGTTTGGGACAGCACCTCAATCGAAAGGTCGGCAATGCGTGGTCACCAGA AAGTGTATTGAAGCAAACACCAGAGAAAAGACGGGCGATTATATGCTGAC TCATCAGTTCCTTTATTTCGTTTTTGGATTCCAATATAATTGTGACCAGC AAATAGCCAAAGCAATGGGAGGAAAACACAAGATGGACGCGTTCTTCAGA AAGATGGCAGTAAATATAGCATATCAGTTACAAATCAGTGGAAGTCCTAA AGATGCTTTGCTCCTGGATAGAGAACTAGAACAAGCGATGTTCTGTGCAA TGTTTGGAATTGTGGAATGTACGTCACGTGATTTAACTCTTGATTTTATC AAGTATGTTGAAGCTGACGGTTGTACCAAGTTATCGAAAGATCGAAAGAC AAGAGAAAAACGCCAAGATCAATTTCTAGGTGGATGTTCGCAACACACAG ATGGATTAATGGCAGCATTCCTTTCTTTAAGTCTCAGATCTGCACTCATG CTACCCAATTGTAGTTAAATGAAGTCAAGATTATGGCCAGTGGATTTggt ttttcttgtatttttcattcaaatattTGGTGATGGATTATTGACTTATC AAGATGAAAATCTTATTGGAAACGACGTTATCAAACCAAGAATTTGCTCT GGGTTCAGTGACAATGAACATAAATCAAAATACATTTCCGAAATCGTAGC TAGTCTTGATCGCATCATAAATCACTTCTCTTTTTACACTGATCACCTGA TCGCTGATGGTCTGTTTGGTTTAAGAATCGCTGAAGGCGTGTTGAAAAAT ATCGTCCAATATGGAGACCGTTACAAACATCACAAAATTGAAGCATTACA CTCTCGTTTATCAATGATCAATCAACTTTCATATGAAGGAATCACAAAGA GAAAATTACCTTATGATGTTCAATTCGATAAAATCATGAGGGAACCTTTT GATCGATTGTGGCCATTCAAAAGCTTCAAAGATTTCAAGAAAGACATTGT GAAAGATTACATACATGGTATAGAcaaagattttgatgaagaCTTCAGTG ACCACTGTTTCGCGTTGTTGTTTGGGACAGCACCTCAATCGAAAGGTCGG CAATGCGTGGTCACCAGAAAGTGTATTGAAGCAAACACCAGAGAAAAGAC GGGCGATTATATGCTGACTCATCAGTTCCTTTATTTCGTTTTTGGATTCC AATATAATTGTGACCAGCAAATAGCCAAAGCAATGGGAGGAAAACACAAG ATGGACGCGTTCTTCAGAAAGATGGCAGTAAATATAGCATATCAGTTACA AATCAGTGGAAGTCCTAAAGATGCTTTGCTCCTGGATAGAGAACTAGAAC AAGCGATGTTCTGTGCAATGTTTGGAATTGTGGAATGTACGTCACGTGAT TTAACTCTTGATTTTATCAAGTATGTTGAAGCTGACGGTTGTACCAAGTT ATCGAAAGATCGAAAGACAAGAGAAAAACGCCAAGATCAATTTCTAGGTG GATGTTCGCAACACACAGATGGATTAATGGCAGCATTCCTTTCTTTAAGT CTCAGATCTGCACTCATGCTACCCAATTGTAGTTAAATGAAGTCAAGATT ATGGCCAGTGGATTTggtttttcttgtatttttcattcaaatattTGGTG ATGGATTATTGACTTATCAAGATGAAAATCTTATTGGAAACGACGTTATC AAACCAAGAATTTGCTCTGGGTTCAGTGACAATGAACATAAATCAAAATA CATTTCCGAAATCGTAGCTAGTCTTGATCGCATCATAAATCACTTCTCTT TTTACACTGATCACCTGATCGCTGATGGTCTGTTTGGTTTAAGAATCGCT GAAGGCGTGTTGAAAAATATCGTCCAATATGGAGACCGTTACAAACATCA CAAAATTGAAGCATTACACTCTCGTTTATCAATGATCAATCAACTTTCAT ATGAAGGAATCACAAAGAGAAAATTACCTTATGATGTTCAATTCGATAAA ATCATGAGGGAACCTTTTGATCGATTGTGGCCATTCAAAAGCTTCAAAGA TTTCAAGAAAGACATTGTGAAAGATTACATACATGGTATAGAcaaagatt ttgatgaagaCTTCAGTGACCACTGTTTCGCGTTGTTGTTTGGGACAGCA CCTCAATCGAAAGGTCGGCAATGCGTGGTCACCAGAAAGTGTATTGAAGC AAACACCAGAGAAAAGACGGGCGATTATATGCTGACTCATCAGTTCCTTT ATTTCGTTTTTGGATTCCAATATAATTGTGACCAGCAAATAGCCAAAGCA ATGGGAGGAAAACACAAGATGGACGCGTTCTTCAGAAAGATGGCAGTAAA TATAGCATATCAGTTACAAATCAGTGGAAGTCCTAAAGATGCTTTGCTCC TGGATAGAGAACTAGAACAAGCGATGTTCTGTGCAATGTTTGGAATTGTG GAATGTACGTCACGTGATTTAACTCTTGATTTTATCAAGTATGTTGAAGC TGACGGTTGTACCAAGTTATCGAAAGATCGAAAGACAAGAGAAAAACGCC AAGATCAATTTCTAGGTGGATGTTCGCAACACACAGATGGATTAATGGCA GCATTCCTTTCTTTAAGTCTCAGATCTGCACTCATGCTACCCAATTGTAG TTAAATGAAGTCAAGATTATGGCCAGTGGATTTggtttttcttgtatttt tcattcaaatattTGGTGATGGATTATTGACTTATCAAGATGAAAATCTT ATTGGAAACGACGTTATCAAACCAAGAATTTGCTCTGGGTTCAGTGACAA TGAACATAAATCAAAATACATTTCCGAAATCGTAGCTAGTCTTGATCGCA TCATAAATCACTTCTCTTTTTACACTGATCACCTGATCGCTGATGGTCTG TTTGGTTTAAGAATCGCTGAAGGCGTGTTGAAAAATATCGTCCAATATGG AGACCGTTACAAACATCACAAAATTGAAGCATTACACTCTCGTTTATCAA TGATCAATCAACTTTCATATGAAGGAATCACAAAGAGAAAATTACCTTAT GATGTTCAATTCGATAAAATCATGAGGGAACCTTTTGATCGATTGTGGCC ATTCAAAAGCTTCAAAGATTTCAAGAAAGACATTGTGAAAGATTACATAC ATGGTATAGAcaaagattttgatgaagaCTTCAGTGACCACTGTTTCGCG TTGTTGTTTGGGACAGCACCTCAATCGAAAGGTCGGCAATGCGTGGTCAC CAGAAAGTGTATTGAAGCAAACACCAGAGAAAAGACGGGCGATTATATGC TGACTCATCAGTTCCTTTATTTCGTTTTTGGATTCCAATATAATTGTGAC CAGCAAATAGCCAAAGCAATGGGAGGAAAACACAAGATGGACGCGTTCTT CAGAAAGATGGCAGTAAATATAGCATATCAGTTACAAATCAGTGGAAGTC CTAAAGATGCTTTGCTCCTGGATAGAGAACTAGAACAAGCGATGTTCTGT GCAATGTTTGGAATTGTGGAATGTACGTCACGTGATTTAACTCTTGATTT TATCAAGTATGTTGAAGCTGACGGTTGTACCAAGTTATCGAAAGATCGAA AGACAAGAGAAAAACGCCAAGATCAATTTCTAGGTGGATGTTCGCAACAC ACAGATGGATTAATGGCAGCATTCCTTTCTTTAAGTCTCAGATCTGCACT CATGCTACCCAATTGTAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00025502-exon-sc0000538-1491911889:53119..53721 | TCONS_00025502-exon-sc0000538-1491911889:53119..53721 | Clytia hemisphaerica | exon |
| TCONS_00025502-exon-sc0000538-1510915933:53119..53721 | TCONS_00025502-exon-sc0000538-1510915933:53119..53721 | Clytia hemisphaerica | exon |
| TCONS_00025502-exon-sc0000538-1575043694:53119..53721 | TCONS_00025502-exon-sc0000538-1575043694:53119..53721 | Clytia hemisphaerica | exon |
| TCONS_00025502-exon-sc0000538-1491911889:55259..55459 | TCONS_00025502-exon-sc0000538-1491911889:55259..55459 | Clytia hemisphaerica | exon |
| TCONS_00025502-exon-sc0000538-1510915933:55259..55459 | TCONS_00025502-exon-sc0000538-1510915933:55259..55459 | Clytia hemisphaerica | exon |
| TCONS_00025502-exon-sc0000538-1575043694:55259..55459 | TCONS_00025502-exon-sc0000538-1575043694:55259..55459 | Clytia hemisphaerica | exon |
| TCONS_00025502-exon-sc0000538-1491911889:55759..56049 | TCONS_00025502-exon-sc0000538-1491911889:55759..56049 | Clytia hemisphaerica | exon |
| TCONS_00025502-exon-sc0000538-1510915933:55759..56049 | TCONS_00025502-exon-sc0000538-1510915933:55759..56049 | Clytia hemisphaerica | exon |
| TCONS_00025502-exon-sc0000538-1575043694:55759..56049 | TCONS_00025502-exon-sc0000538-1575043694:55759..56049 | Clytia hemisphaerica | exon |
| TCONS_00025502-exon-sc0000538-1491911889:56391..57008 | TCONS_00025502-exon-sc0000538-1491911889:56391..57008 | Clytia hemisphaerica | exon |
| TCONS_00025502-exon-sc0000538-1510915933:56391..57008 | TCONS_00025502-exon-sc0000538-1510915933:56391..57008 | Clytia hemisphaerica | exon |
| TCONS_00025502-exon-sc0000538-1575043694:56391..57008 | TCONS_00025502-exon-sc0000538-1575043694:56391..57008 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000538 | supercontig | sc0000538:53119..57008 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
| IPR031751 | DUF4735 |
Blast
The following BLAST results are available for this feature:
|