TCONS_00025494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025494
Unique NameTCONS_00025494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025494 ID=TCONS_00025494|Name=TCONS_00025494|organism=Clytia hemisphaerica|type=transcript|length=315bp
GCGTATCCTtggtattcatgacgtaatctttactacggaaacacccgaaa
atcACCGGACGTTAGCAACCAGTCAAGAAATTGAAACAATAGAACTAGTC
CCATAAACGCCCGGCGTCTTTCGAGTGTTACCGTATTgcaaatttcaaca
aaagagAGCAAAAGAACAATAACTATGATAATAATAATGGAAAATTTGTT
ATAATAAGCCTAACTAGAATTTACGGTCAAAAAGACATAAAAAATCTTGC
TTTAAATAATATATCTTAGACTAAAACACCCCTGTACCATAGACACGATG
GGAACCCAACCATTT
Run BLAST on NCBI

transcript from alignment at sc0000536:119505..119819

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025494 ID=TCONS_00025494|Name=TCONS_00025494|organism=Clytia hemisphaerica|type=transcript|length=315bp|location=Sequence derived from alignment at sc0000536:119505..119819 (Clytia hemisphaerica)
AAATGGTTGGGTTCCCATCGTGTCTATGGTACAGGGGTGTTTTAGTCTAA
GATATATTATTTAAAGCAAGATTTTTTATGTCTTTTTGACCGTAAATTCT
AGTTAGGCTTATTATAACAAATTTTCCATTATTATTATCATAGTTATTGT
TCTTTTGCTctcttttgttgaaatttgcAATACGGTAACACTCGAAAGAC
GCCGGGCGTTTATGGGACTAGTTCTATTGTTTCAATTTCTTGACTGGTTG
CTAACGTCCGGTgattttcgggtgtttccgtagtaaagattacgtcatga
ataccaAGGATACGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014310XLOC_014310Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025494-exon-sc0000536-1491911889:119505..119819TCONS_00025494-exon-sc0000536-1491911889:119505..119819Clytia hemisphaericaexon
TCONS_00025494-exon-sc0000536-1510915933:119505..119819TCONS_00025494-exon-sc0000536-1510915933:119505..119819Clytia hemisphaericaexon
TCONS_00025494-exon-sc0000536-1575043694:119505..119819TCONS_00025494-exon-sc0000536-1575043694:119505..119819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000536supercontigsc0000536:119505..119819 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.34232	2.93675	1.51549	1.112	2.7075	4.99218	3.01143	6.44403	1.1279	3.49273	5.4242	0.445707	1.55781	0	0.950035	2.24297	0.251196	1.28734	1.77853	0.372221	1.29411	0.946832	3.06933	1.39523	2.51485	2.56508	2.75296	0.979346	1.4856	1.13519
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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