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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025478 ID=TCONS_00025478|Name=TCONS_00025478|organism=Clytia hemisphaerica|type=transcript|length=1005bpRun BLAST on NCBI protein sequence of TCONS_00025478-protein >TCONS_00025478-protein ID=TCONS_00025478-protein|Name=TCONS_00025478-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp MNHEYLEIVIKLEDESIGYPDDENMEPFKNHESELFENSCRDVKGNDVTSRun BLAST on NCBI transcript from alignment at sc0000536:221422..229672+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025478 ID=TCONS_00025478|Name=TCONS_00025478|organism=Clytia hemisphaerica|type=transcript|length=8251bp|location=Sequence derived from alignment at sc0000536:221422..229672+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000536:221422..229672+ >TCONS_00025478 ID=TCONS_00025478|Name=TCONS_00025478|organism=Clytia hemisphaerica|type=CDS|length=1680bp|location=Sequence derived from alignment at sc0000536:221422..229672+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025478 vs. Swiss-Prot (Human)
Match: ZN300 (Zinc finger protein 300 OS=Homo sapiens GN=ZNF300 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 7.061e-24 Identity = 54/114 (47.37%), Postives = 76/114 (66.67%), Query Frame = 1
Query: 661 KPFKCNECGERFYQESTLTRHKRIHK-ECKYRCKQCDKCYNSKNNLMQHQKHFHEGLRPFRCDECHKAFCRKNHLTIHKRTVHEGIKAFKCRECCESFASKRNLERHQVTVHQG 999
KP++C+ECG+ F Q+S L H+RIH E Y C++C K ++ K+ L+ H + H G +P+ C EC KAFC K+HL IHKR +H G K +KC +C E+F+ K L HQ+ VH G
Sbjct: 351 KPYECSECGKAFSQKSPLIIHQRIHTGEKPYECRECGKAFSQKSQLIIHHR-AHTGEKPYECTECGKAFCEKSHLIIHKR-IHTGEKPYKCAQCEEAFSRKTELITHQL-VHTG 461 HSP 2 Score: 90.1225 bits (222), Expect = 8.064e-20 Identity = 47/114 (41.23%), Postives = 73/114 (64.04%), Query Frame = 1
Query: 661 KPFKCNECGERFYQESTLTRHKRIHK-ECKYRCKQCDKCYNSKNNLMQHQKHFHEGLRPFRCDECHKAFCRKNHLTIHKRTVHEGIKAFKCRECCESFASKRNLERHQVTVHQG 999
KP+KC +C E F +++ L H+ +H E Y C +C K ++ K+ L+ HQ+ H G +P++C EC KAFC+K+HL H+R +H G K + C EC ++F+ K +L HQ +H G
Sbjct: 435 KPYKCAQCEEAFSRKTELITHQLVHTGEKPYECTECGKTFSRKSQLIIHQR-THTGEKPYKCSECGKAFCQKSHLIGHQR-IHTGEKPYICTECGKAFSQKSHLPGHQ-RIHTG 545 HSP 3 Score: 89.7373 bits (221), Expect = 1.021e-19 Identity = 48/114 (42.11%), Postives = 73/114 (64.04%), Query Frame = 1
Query: 661 KPFKCNECGERFYQESTLTRHKRIHK-ECKYRCKQCDKCYNSKNNLMQHQKHFHEGLRPFRCDECHKAFCRKNHLTIHKRTVHEGIKAFKCRECCESFASKRNLERHQVTVHQG 999
KP++C ECG+ F ++S L H+R H E Y+C +C K + K++L+ HQ+ H G +P+ C EC KAF +K+HL H+R +H G K + C EC ++F+ K +L HQ +H G
Sbjct: 463 KPYECTECGKTFSRKSQLIIHQRTHTGEKPYKCSECGKAFCQKSHLIGHQR-IHTGEKPYICTECGKAFSQKSHLPGHQR-IHTGEKPYICAECGKAFSQKSDLVLHQ-RIHTG 573 HSP 4 Score: 89.3521 bits (220), Expect = 1.729e-19 Identity = 48/115 (41.74%), Postives = 75/115 (65.22%), Query Frame = 1
Query: 661 KPFKCNECGERFYQESTLTRHKRIHK-ECKYRCKQCDKCYNSKNNLMQHQKHFHEGLRPFRCDECHKAFCRKNHLTIHKRTVHEGIKAFKCRECCESFASKRNLERHQVTVHQGI 1002
KP+KC+ECG+ F Q+S L H+RIH E Y C +C K ++ K++L HQ+ H G +P+ C EC KAF +K+ L +H+R +H G + ++C C ++F +++ Q+TVHQ I
Sbjct: 491 KPYKCSECGKAFCQKSHLIGHQRIHTGEKPYICTECGKAFSQKSHLPGHQR-IHTGEKPYICAECGKAFSQKSDLVLHQR-IHTGERPYQCAICGKAF-----IQKSQLTVHQRI 598 HSP 5 Score: 84.7297 bits (208), Expect = 4.906e-18 Identity = 44/107 (41.12%), Postives = 67/107 (62.62%), Query Frame = 1
Query: 661 KPFKCNECGERFYQESTLTRHKRIHK-ECKYRCKQCDKCYNSKNNLMQHQKHFHEGLRPFRCDECHKAFCRKNHLTIHKRTVHEGIKAFKCRECCESFASKRNLERH 978
KP+ C CG+ F ++ L H+R H E Y C +C K ++ K++L+ HQ+ H G +P+ C EC KAF +K+ L IH+R +H G K ++CREC ++F+ K L H
Sbjct: 295 KPYDCGACGKAFSEKFHLVVHQRTHTGEKPYDCSECGKAFSQKSSLIIHQR-VHTGEKPYECSECGKAFSQKSPLIIHQR-IHTGEKPYECRECGKAFSQKSQLIIH 399 The following BLAST results are available for this feature:
BLAST of TCONS_00025478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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