TCONS_00025477 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025477
Unique NameTCONS_00025477
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1813

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025477 ID=TCONS_00025477|Name=TCONS_00025477|organism=Clytia hemisphaerica|type=transcript|length=1813bp
TCATGGTTGTAATGAAACGAATCatgaacATTTGGAAATTGTTATCAAAC
TAGAAGATGAATCAATCGGATATCCAGATGACGAAAATATGGAACCATTC
AAAAACCATGAAAGTGAATTATTTGNATTGAACAAGAAGAAGATCATGGT
TgcgatgaaattgaaatgaatcaTGAATATTTGGAAATTGTTATCAAACT
AGAAGATGAATCAATCGGATATCCAGATGACGAAAATATGGAACCATTCA
AAAACCATGAAAGtgaattatttgaaaattcttgtaGAGATGTAAAGGGG
AACGATGTTACATCACCCGAAGAAACAAACCCCAAAAATTATGAACTTAG
CATTAAACTTGAAGACGATTCAAAACCTCCATCTGATAAGAATCGAAGTG
CAAAATCAATAGAATATTTGGGAAATCGAAATTCAGAAAATATTAATGCT
GGTACGAATTATTTTGATCAGTTCTCCGTAAATGAAGAAATTAATTCAAA
GATCGGGGAGGAAATCACTATTAAGTTTGAAGATGGGTTGGATAGCTTTC
ACAACCATGAAAATGCAAATTTAGAGGAATGTTTTGAGGCTATCAAGACT
GACAATTCTAATAATGACGATTTGACAAGTGTAGATGGTTTTGATTACGA
TCAAAGTATTAAACCTTTCAAGTGTAATGAATGTGGTGAACGATTTTACC
AAGAAAGCACTCTAACTCGACACAAAAGGATCCATAAAGAATGTAAGTAT
AGATGCAAACAATGTGATAAATGTTATAATAGTAAAAATAATCTTATGca
acatcaaaaacattttcatgaAGGTTTGAGACCCTTCAGGTGTGACGAGT
GCCATAAAGCCTTTTGTCGCAAAAATCACTTAACAATCCATAAAAGAACA
GTTCATGAAGGTATAAAGGCATttgaatgtcaagaatgtggtaaatcatN
GTGCCATAAAGCCTTTTGTCGCAAAAATTACTTAACAATCCATAAAAGAA
CAATTCATGAAGGTATAAAGGCATttgaatgtcaagaatgtggtaaatca
tTTGGAAGAAAATCGGCCGTAACCTCGCATAAAAGAACTGTTCATGAAGG
CATAAAGCCTTTTAATTGTCAAGAGTGTAGTAAATCTTTTGGACTTAAGA
CGACCTTAACTTCTCATCAAAGAACTGTTCATGAAGGTGTAAAGGCCTtc
aaatgtcaagaatgtggtaaatcttttggaCACAAGACGAACTTAACTTC
TCATCAAAGAACTGTTCATGAAGGTGTAAAGGCCTTCAAATGTCAAGAAT
GTCGTAAATGTTTTTCTACAAAGAGTTCTTTGAAAAGGCATCAAAGAACA
GTCCatgataaagctttttaagcgtcaGAAATAAGGAAAAAGAATTGAGA
GAAAGGTTCGTTAAAGAAACataaaagaataaataaatgaataaatttcA
TTGATGTGAAATGTCATTGATgtgttagattttttttcactttaNGAAAA
AGAATTGAGAGAAAGGTTCGTTAAAGAAACatgaaagaataaataaatga
ataaatttcATTGATGTGAAATGTCATTGAtgtgttgattttttttcact
ttaatcCACAGACACGTCGAAAGGAAGTTCAAGAAGAGATTGAATGTTTC
AATGTGTGAAAAGTGTTGCAAATTTAATTGAAGATAAACAAGGAGCGCAG
GCTATTAGCGATGGGAGAATTTTATTAtctttaaatataaaaacttcAAC
GAATCTTGTCATTGATAACGAGCTACTGAGCCTTCAACGGCACTTTCTAC
Gggaaaattgaaa
Run BLAST on NCBI

transcript from alignment at sc0000536:221422..225722+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025477 ID=TCONS_00025477|Name=TCONS_00025477|organism=Clytia hemisphaerica|type=transcript|length=4301bp|location=Sequence derived from alignment at sc0000536:221422..225722+ (Clytia hemisphaerica)
TCATGGTTGTAATGAAACGAATCatgaacattttgaaattgtaaTCAAAC
TGGAAGATCAATCAATTGGTTATCCAGATGACGAAAATAGGGAaccattc
aaaaattgtgaaagAAAACTAGTTTAAATTTTTCTAGAAATGTAAAGTGA
AACGGTGTTACATCATCCgaaaaaactgacaaaattatgAAATCACCATT
AAATTTGAAGATGAGTCAAAAGCTCAAGCTAATAAGGatgaaagtctaaa
attaatgaatatttcagaaaataaaaattcaaaaaataataatgattGTA
CGAATCATTTTGATCAGTTCTCCGTAAATGAAGAAATTGTCTCACAGATT
GGGGAGAGAATCACTATCAAATTTGAAGATGAATTCTTTCAAAACCATGA
AAATGAACGTCTACAGGAATGAGGCAGACAAGATCGAAAATCCAAACATT
GATCAAATAATGAATAGTTTGATTAAGGAACATCAAAGAACTCTACATGA
TAAACCTtttaaatgtcaagaatgtggtaagtGTTTTGTTACAAAGAGTT
GTTTGGTGAGGCACCAAAAAACAGTCCATCAAGGTATAAAGGCATTTGAG
TGTCAGCAATGTTGTAAATCTTttggaaataaaacaaaattaacTCTGCA
CCAAAGAACAGTTCATGAAGgtataaagctttttaaatgtcaagaatgtT
ATAAATCATTTGGACATTAATCGACCCTTACTACGCATCAAAGAACAGTC
CATGAAGGTATTAAGGCATTTTAATGTCAAACATGTGCTAAAAGTTTTGG
GCAGAAAACGACCTTAACTTTTCAACAAAGAACAGTTCATGAAGGTATAA
AGCCCTATAAATGTCAAGAACGTTGCAAGTTTTTGGACATAAAACGACCT
TAACTTCGCATCAAAGAACTGTCCATCAAGGTATGAAGACCtttaaatgt
caagaatgtggtaaatctcttgctacaaaaatttatttgaagaaACCCCT
GAATGAACAGTCCATGCTTAAGCCTTTTGAGTGTCAACTATGGAagtttt
tttgatgagaaaGGTTCGTTAaggaaacatcaaagaaaagtgCACGATAA
AATTAAACCTTTTCAATGTCATGGATGTGGTCAGTTTTtgcatttaaaat
tttttacagACGCTTCAAAAGGATGTTCACgagaaaatgaaagtttttac
ACGTGAAAAGTGTTGCAAATCTTTAGCATGGaaaattaatttgaagaccc
GCCAAGGAAAAGCCCACAAGGCGATGAGAACATTTTTGGATCTAAAACAA
CAATTTCATTGAATCTTAATGTCATCGATAAAGAGCTACCTACGGTGCCT
TCAacagatttttttacttgaaagcTGGAACAGATGATAATTCGCTGTAA
acctttcttaaaaaacatTCTAATTTGTAATCAATTACCAAATTTAAACA
GCTAcctttttgggcaatttttctaaatcatacacgtttttttttttatt
agaacctagtttataagaacatggaggctgaaattcgtcgaaaaattaag
aacatcgtaagaacatgcccagcctcagtttGGAAAAAAATGCTAAGAAA
CTACaatattttcctcttttcaagcagttttaactgaacttagagatgga
ttttctaaaatcgagagtcaaatattgtccaaattctaccaattttaagt
gctccttattttgcatgatattgtcgatttagaggagtctgaaaagttaa
gaacgcatttaagaacattctaggctgaaaattgctaaaaaaataagcac
atcaaggctcagccaaattttaggtgttctaataaaaaaaaaagtgtgta
ggTGTATTTTGAGTATGATGAAGTTTTAGTGATGTCAACACAAGCAAGTT
TTGTCTCTTTAATACATGTAACATATAAGGGTGAACGTTTTTGAAtcaaa
aatctttctcaaaTATTTATATTGTTAAAttggttatttttttttttttt
caatattttgtgcATTCCCCCATTCCTTAATGAGTAATAACAAAGAGAGG
TTGGACCTTAATCTCAAATAAAGATATTTCTGAGTGGAATATACTCAAAA
AAAGTTTATGATTTAAattcttgtagaaaagtgctatgatcttcattttt
gtaaTGTGGATGCTTTAATATTACAGCGTCATAAATTCGAAACGAATTAT
CAAATaatatttattcagtcaaaaacTACAGTTTAAATCTTTATTATTTC
cgaactttttttatatttttatttttatttttatcatcatttttatttca
actcCACGCATGTTTAACTTTTCAACAAGCGCTAAACCAAAATCATTTCG
AAACACTTCTTTAGACATTTTCAACATAATAATTTCAATACTGTTACTGT
ATCTTTCTTTTATCTTAgagtattttgtttaaaaaatgaatgaGATTGAA
GAAATAAAGATAAAAGTTGAACAAGAAGAAGATCATGGTTGTGATGAAAT
TGAAACGAATCATGAACATTTGGAAATTGTTATCAAACTAGAAGATGAAT
CAATCGGATATCCAGATGACGAAAATATGGAACCATTCAAAAACCATGAA
AGTGAATTATTTGNATTGAACAAGAAGAAGATCATGGTTgcgatgaaatt
gaaatgaatcaTGAATATTTGGAAATTGTTATCAAACTAGAAGATGAATC
AATCGGATATCCAGATGACGAAAATATGGAACCATTCAAAAACCATGAAA
GtgaattatttgaaaattcttgtaGAGATGTAAAGGGGAACGATGTTACA
TCACCCGAAGAAACAAACCCCAAAAATTATGAACTTAGCATTAAACTTGA
AGACGATTCAAAACCTCCATCTGATAAGAATCGAAGTGCAAAATCAATAG
AATATTTGGGAAATCGAAATTCAGAAAATATTAATGCTGGTACGAATTAT
TTTGATCAGTTCTCCGTAAATGAAGAAATTAATTCAAAGATCGGGGAGGA
AATCACTATTAAGTTTGAAGATGGGTTGGATAGCTTTCACAACCATGAAA
ATGCAAATTTAGAGGAATGTTTTGAGGCTATCAAGACTGACAATTCTAAT
AATGACGATTTGACAAGTGTAGATGGTTTTGATTACGATCAAAGTATTAA
ACCTTTCAAGTGTAATGAATGTGGTGAACGATTTTACCAAGAAAGCACTC
TAACTCGACACAAAAGGATCCATAAAGAATGTAAGTATAGATGCAAACAA
TGTGATAAATGTTATAATAGTAAAAATAATCTTATGcaacatcaaaaaca
ttttcatgaAGGTTTGAGACCCTTCAGGTGTGACGAGTGCCATAAAGCCT
TTTGTCGCAAAAATCACTTAACAATCCATAAAAGAACAGTTCATGAAGGT
ATAAAGGCATttgaatgtcaagaatgtggtaaatcatNGTGCCATAAAGC
CTTTTGTCGCAAAAATTACTTAACAATCCATAAAAGAACAATTCATGAAG
GTATAAAGGCATttgaatgtcaagaatgtggtaaatcatTTGGAAGAAAA
TCGGCCGTAACCTCGCATAAAAGAACTGTTCATGAAGGCATAAAGCCTTT
TAATTGTCAAGAGTGTAGTAAATCTTTTGGACTTAAGACGACCTTAACTT
CTCATCAAAGAACTGTTCATGAAGGTGTAAAGGCCTtcaaatgtcaagaa
tgtggtaaatcttttggaCACAAGACGAACTTAACTTCTCATCAAAGAAC
TGTTCATGAAGGTGTAAAGGCCTTCAAATGTCAAGAATGTCGTAAATGTT
TTTCTACAAAGAGTTCTTTGAAAAGGCATCAAAGAACAGTCCatgataaa
gctttttaagcgtcaGAAATAAGGAAAAAGAATTGAGAGAAAGGTTCGTT
AAAGAAACataaaagaataaataaatgaataaatttcATTGATGTGAAAT
GTCATTGATgtgttagattttttttcactttaNGAAAAAGAATTGAGAGA
AAGGTTCGTTAAAGAAACatgaaagaataaataaatgaataaatttcATT
GATGTGAAATGTCATTGAtgtgttgattttttttcactttaatcCACAGA
CACGTCGAAAGGAAGTTCAAGAAGAGATTGAATGTTTCAATGTGTGAAAA
GTGTTGCAAATTTAATTGAAGATAAACAAGGAGCGCAGGCTATTAGCGAT
GGGAGAATTTTATTAtctttaaatataaaaacttcAACGAATCTTGTCAT
TGATAACGAGCTACTGAGCCTTCAACGGCACTTTCTACGggaaaattgaa
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014298XLOC_014298Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025477-exon-sc0000536-1491911889:221422..221450TCONS_00025477-exon-sc0000536-1491911889:221422..221450Clytia hemisphaericaexon
TCONS_00025477-exon-sc0000536-1510915933:221422..221450TCONS_00025477-exon-sc0000536-1510915933:221422..221450Clytia hemisphaericaexon
TCONS_00025477-exon-sc0000536-1575043694:221422..221450TCONS_00025477-exon-sc0000536-1575043694:221422..221450Clytia hemisphaericaexon
TCONS_00025477-exon-sc0000536-1491911889:223939..225722TCONS_00025477-exon-sc0000536-1491911889:223939..225722Clytia hemisphaericaexon
TCONS_00025477-exon-sc0000536-1510915933:223939..225722TCONS_00025477-exon-sc0000536-1510915933:223939..225722Clytia hemisphaericaexon
TCONS_00025477-exon-sc0000536-1575043694:223939..225722TCONS_00025477-exon-sc0000536-1575043694:223939..225722Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000536supercontigsc0000536:221422..225722 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0517684	0	0	0	0	0.134023	0.207504	0	0	0	0.059433	0	0	0	0	0	4.07941e-07	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00025477 vs. Swiss-Prot (Human)
Match: ZN33B (Zinc finger protein 33B OS=Homo sapiens GN=ZNF33B PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 2.597e-59
Identity = 126/260 (48.46%), Postives = 167/260 (64.23%), Query Frame = 1 
Query:  661 KPFKCNECGERFYQESTLTRHKRIHK-ECKYRCKQCDKCYNSKNNLMQHQKHFHEGLRPFRCDECHKAFCRKNHLTIHKRTVHEGIKAFECQECGKSXCHKAFCRKNYLTIHKRTIHEGIKAFECQECGKSFGRKSAVTSHKRTVHEGIKPFNCQECSKSFGLKTTLTSHQRTVHEGVKAFKCQECGKSFGHKTNLTSHQRTVHEGVKAFKCQECRKCFSTKSSLKRHQRT-VHDKAF*ASEIRKKN*EKGSLKKHKRIN 1434
            KPF+CNECG+ F  +S LT H+R H  E  Y+C  C K +  K++L +HQ+  H G +P+ C EC K+FC  +HLT+H+RT H G K FEC ECGKS     FC+K++LT H+RT H G K +EC  CGK+F  KS +T H + +H G+KP+ C EC K+F LK+ LT HQRT H G K F C ECGK F HK+ L+ H RT H G K ++C EC K F  KS L +H RT   +K +  +E  K   +K  L +H+RI+
Sbjct:  383 KPFECNECGKAFSHKSALTLHQRTHTGEKPYQCNACGKTFYQKSDLTKHQR-THTGQKPYECYECGKSFCMNSHLTVHQRT-HTGEKPFECLECGKS-----FCQKSHLTQHQRT-HIGDKPYECNACGKTFYHKSVLTRH-QIIHTGLKPYECYECGKTFCLKSDLTIHQRT-HTGEKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQRIH 631

HSP 2 Score: 187.578 bits (475), Expect = 1.361e-50
Identity = 123/283 (43.46%), Postives = 164/283 (57.95%), Query Frame = 1 
Query:  661 KPFKCNECGERFYQESTLTRHKRIHKECK-YRCKQCDKCYNSKNNLMQHQKHFHEGLRPFRCDECHKAFCRKNHLTIHKRTVHEGIKAFECQECGK-----------------------SXCHKAFCRKNYLTIHKRTIHEGIKAFECQECGKSFGRKSAVTSHKRTVHEGIKPFNCQECSKSFGLKTTLTSHQRTVHEGVKAFKCQECGKSFGHKTNLTSHQRTVHEGVKAFKCQECRKCFSTKSSLKRHQRT-VHDKAF*ASEIRKKN*EKGSLKKHKRIN 1434
            KP++CN CG+ FY +S LTRH+ IH   K Y C +C K +  K++L  HQ+  H G +PF C EC K F  K+ L+ H RT H G K +EC ECGK                       + C K FC+K+ LT H+R IH G K +EC ECGK+F  KSA+  H+RT H   KP+ C EC KSF +K+ L  H+R  H G K ++C ECGKSF HK++LT H R  H G K+ +C EC K F  KS L +HQR+   +K +  +  RK   +K +L  H+R +
Sbjct:  495 KPYECNACGKTFYHKSVLTRHQIIHTGLKPYECYECGKTFCLKSDLTIHQR-THTGEKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQR-IHIGEKPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHERK-HTGEKPYECNECGKSFSHKSSLTVHHR-AHTGEKSCQCNECGKIFYRKSDLAKHQRSHTGEKPYECNTCRKTFSQKSNLIVHQRTH 771

HSP 3 Score: 115.161 bits (287), Expect = 1.510e-26
Identity = 76/169 (44.97%), Postives = 100/169 (59.17%), Query Frame = 1 
Query:  844 DECHKAFCRKNHLTIHKRTVHEGIKAFECQECGKSXCHKAFCRKNYLTIHKRTIHEGIKAFECQECGKSFGRKSAVTSHKRTVHEGIKPFNCQECSKSFGLKTTLTSHQRTVHEGVKAFKCQECGKSFGHKTNLTSHQRTVHEGVKAFKCQECRKCFSTKSSLKRHQRT 1350
             +C K  C K+ L+ H       +K ++C E G +     F RK  L+  ++   +G K FEC ECGK+F  KS +T H+R VH G K F C +C K+F  K+ LT HQR+ H G K F+C ECGK+F HK+ LT HQRT H G K ++C  C K F  KS L +HQRT
Sbjct:  278 SDCEKFLCVKSTLSKHDGVP---VKHYDCGESGNN-----FRRKLCLSQLQKG-DKGEKHFECNECGKAFWEKSHLTRHQR-VHTGEKHFQCNQCGKTFWEKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFYQKSDLTKHQRT 434
The following BLAST results are available for this feature:
BLAST of TCONS_00025477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN33B2.597e-5948.46Zinc finger protein 33B OS=Homo sapiens GN=ZNF33B ... [more]
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