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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025476 ID=TCONS_00025476|Name=TCONS_00025476|organism=Clytia hemisphaerica|type=transcript|length=1706bp
tgaagaaataaagataaaaattgaaCAAGAAGAAGATCATGGTTgcgatg
aaattgaaatgaatcaTGAATATTTGGAAATTGTTATCAAACTAGAAGAT
GAATCAATCGGATATCCAGATGACGAAAATATGGAACCATTCAAAAACCA
TGAAAGtgaattatttgaaaattcttgtaGAGATGTAAAGGGGAACGATG
TTACATCACCCGAAGAAACAAACCCCAAAAATTATGAACTTAGCATTAAA
CTTGAAGACGATTCAAAACCTCCATCTGATAAGAATCGAAGTGCAAAATC
AATAGAATATTTGGGAAATCGAAATTCAGAAAATATTAATGCTGGTACGA
ATTATTTTGATCAGTTCTCCGTAAATGAAGAAATTAATTCAAAGATCGGG
GAGGAAATCACTATTAAGTTTGAAGATGGGTTGGATAGCTTTCACAACCA
TGAAAATGCAAATTTAGAGGAATGTTTTGAGGCTATCAAGACTGACAATT
CTAATAATGACGATTTGACAAGTGTAGATGGTTTTGATTACGATCAAAGT
ATTAAACCTTTCAAGTGTAATGAATGTGGTGAACGATTTTACCAAGAAAG
CACTCTAACTCGACACAAAAGGATCCATAAAGAATGTAAGTATAGATGCA
AACAATGTGATAAATGTTATAATAGTAAAAATAATCTTATGcaacatcaa
aaacattttcatgaAGGTTTGAGACCCTTCAGGTGTGACGAGTGCCATAA
AGCCTTTTGTCGCAAAAATCACTTAACAATCCATAAAAGAACAGTTCATG
AAGGTATAAAGGCATttgaatgtcaagaatgtggtaaatcatNGTGCCAT
AAAGCCTTTTGTCGCAAAAATTACTTAACAATCCATAAAAGAACAATTCA
TGAAGGTATAAAGGCATttgaatgtcaagaatgtggtaaatcatTTGGAA
GAAAATCGGCCGTAACCTCGCATAAAAGAACTGTTCATGAAGGCATAAAG
CCTTTTAATTGTCAAGAGTGTAGTAAATCTTTTGGACTTAAGACGACCTT
AACTTCTCATCAAAGAACTGTTCATGAAGGTGTAAAGGCCTtcaaatgtc
aagaatgtggtaaatcttttggaCACAAGACGAACTTAACTTCTCATCAA
AGAACTGTTCATGAAGGTGTAAAGGCCTTCAAATGTCAAGAATGTCGTAA
ATGTTTTTCTACAAAGAGTTCTTTGAAAAGGCATCAAAGAACAGTCCatg
ataaagctttttaagcgtcaGAAATAAGGAAAAAGAATTGAGAGAAAGGT
TCGTTAAAGAAACataaaagaataaataaatgaataaatttcATTGATGT
GAAATGTCATTGATgtgttagattttttttcactttaNGAAAAAGAATTG
AGAGAAAGGTTCGTTAAAGAAACatgaaagaataaataaatgaataaatt
tcATTGATGTGAAATGTCATTGAtgtgttgattttttttcactttaatcC
ACAGACACGTCGAAAGGAAGTTCAAGAAGAGATTGAATGTTTCAATGTGT
GAAAAGTGTTGCAAATTTAATTGAAGATAAACAAGGAGCGCAGGCTATTA
GCGATGGGAGAATTTTATTAtctttaaatataaaaacttcAACGAATCTT
GTCATTGATAACGAGCTACTGAGCCTTCAACGGCACTTTCTACGggaaaa
ttgaaa Run BLAST on NCBI transcript from alignment at sc0000536:221386..225722+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025476 ID=TCONS_00025476|Name=TCONS_00025476|organism=Clytia hemisphaerica|type=transcript|length=4337bp|location=Sequence derived from alignment at sc0000536:221386..225722+ (Clytia hemisphaerica)
tgaagaaataaagataaaaattgaaCAAGAAGAAGGTCATGGTTGTAATG
AAACGAATCatgaacattttgaaattgtaaTCAAACTGGAAGATCAATCA
ATTGGTTATCCAGATGACGAAAATAGGGAaccattcaaaaattgtgaaag
AAAACTAGTTTAAATTTTTCTAGAAATGTAAAGTGAAACGGTGTTACATC
ATCCgaaaaaactgacaaaattatgAAATCACCATTAAATTTGAAGATGA
GTCAAAAGCTCAAGCTAATAAGGatgaaagtctaaaattaatgaatattt
cagaaaataaaaattcaaaaaataataatgattGTACGAATCATTTTGAT
CAGTTCTCCGTAAATGAAGAAATTGTCTCACAGATTGGGGAGAGAATCAC
TATCAAATTTGAAGATGAATTCTTTCAAAACCATGAAAATGAACGTCTAC
AGGAATGAGGCAGACAAGATCGAAAATCCAAACATTGATCAAATAATGAA
TAGTTTGATTAAGGAACATCAAAGAACTCTACATGATAAACCTtttaaat
gtcaagaatgtggtaagtGTTTTGTTACAAAGAGTTGTTTGGTGAGGCAC
CAAAAAACAGTCCATCAAGGTATAAAGGCATTTGAGTGTCAGCAATGTTG
TAAATCTTttggaaataaaacaaaattaacTCTGCACCAAAGAACAGTTC
ATGAAGgtataaagctttttaaatgtcaagaatgtTATAAATCATTTGGA
CATTAATCGACCCTTACTACGCATCAAAGAACAGTCCATGAAGGTATTAA
GGCATTTTAATGTCAAACATGTGCTAAAAGTTTTGGGCAGAAAACGACCT
TAACTTTTCAACAAAGAACAGTTCATGAAGGTATAAAGCCCTATAAATGT
CAAGAACGTTGCAAGTTTTTGGACATAAAACGACCTTAACTTCGCATCAA
AGAACTGTCCATCAAGGTATGAAGACCtttaaatgtcaagaatgtggtaa
atctcttgctacaaaaatttatttgaagaaACCCCTGAATGAACAGTCCA
TGCTTAAGCCTTTTGAGTGTCAACTATGGAagtttttttgatgagaaaGG
TTCGTTAaggaaacatcaaagaaaagtgCACGATAAAATTAAACCTTTTC
AATGTCATGGATGTGGTCAGTTTTtgcatttaaaattttttacagACGCT
TCAAAAGGATGTTCACgagaaaatgaaagtttttacACGTGAAAAGTGTT
GCAAATCTTTAGCATGGaaaattaatttgaagacccGCCAAGGAAAAGCC
CACAAGGCGATGAGAACATTTTTGGATCTAAAACAACAATTTCATTGAAT
CTTAATGTCATCGATAAAGAGCTACCTACGGTGCCTTCAacagatttttt
tacttgaaagcTGGAACAGATGATAATTCGCTGTAAacctttcttaaaaa
acatTCTAATTTGTAATCAATTACCAAATTTAAACAGCTAcctttttggg
caatttttctaaatcatacacgtttttttttttattagaacctagtttat
aagaacatggaggctgaaattcgtcgaaaaattaagaacatcgtaagaac
atgcccagcctcagtttGGAAAAAAATGCTAAGAAACTACaatattttcc
tcttttcaagcagttttaactgaacttagagatggattttctaaaatcga
gagtcaaatattgtccaaattctaccaattttaagtgctccttattttgc
atgatattgtcgatttagaggagtctgaaaagttaagaacgcatttaaga
acattctaggctgaaaattgctaaaaaaataagcacatcaaggctcagcc
aaattttaggtgttctaataaaaaaaaaagtgtgtaggTGTATTTTGAGT
ATGATGAAGTTTTAGTGATGTCAACACAAGCAAGTTTTGTCTCTTTAATA
CATGTAACATATAAGGGTGAACGTTTTTGAAtcaaaaatctttctcaaaT
ATTTATATTGTTAAAttggttattttttttttttttcaatattttgtgcA
TTCCCCCATTCCTTAATGAGTAATAACAAAGAGAGGTTGGACCTTAATCT
CAAATAAAGATATTTCTGAGTGGAATATACTCAAAAAAAGTTTATGATTT
AAattcttgtagaaaagtgctatgatcttcatttttgtaaTGTGGATGCT
TTAATATTACAGCGTCATAAATTCGAAACGAATTATCAAATaatatttat
tcagtcaaaaacTACAGTTTAAATCTTTATTATTTCcgaactttttttat
atttttatttttatttttatcatcatttttatttcaactcCACGCATGTT
TAACTTTTCAACAAGCGCTAAACCAAAATCATTTCGAAACACTTCTTTAG
ACATTTTCAACATAATAATTTCAATACTGTTACTGTATCTTTCTTTTATC
TTAgagtattttgtttaaaaaatgaatgaGATTGAAGAAATAAAGATAAA
AGTTGAACAAGAAGAAGATCATGGTTGTGATGAAATTGAAACGAATCATG
AACATTTGGAAATTGTTATCAAACTAGAAGATGAATCAATCGGATATCCA
GATGACGAAAATATGGAACCATTCAAAAACCATGAAAGTGAATTATTTGN
ATTGAACAAGAAGAAGATCATGGTTgcgatgaaattgaaatgaatcaTGA
ATATTTGGAAATTGTTATCAAACTAGAAGATGAATCAATCGGATATCCAG
ATGACGAAAATATGGAACCATTCAAAAACCATGAAAGtgaattatttgaa
aattcttgtaGAGATGTAAAGGGGAACGATGTTACATCACCCGAAGAAAC
AAACCCCAAAAATTATGAACTTAGCATTAAACTTGAAGACGATTCAAAAC
CTCCATCTGATAAGAATCGAAGTGCAAAATCAATAGAATATTTGGGAAAT
CGAAATTCAGAAAATATTAATGCTGGTACGAATTATTTTGATCAGTTCTC
CGTAAATGAAGAAATTAATTCAAAGATCGGGGAGGAAATCACTATTAAGT
TTGAAGATGGGTTGGATAGCTTTCACAACCATGAAAATGCAAATTTAGAG
GAATGTTTTGAGGCTATCAAGACTGACAATTCTAATAATGACGATTTGAC
AAGTGTAGATGGTTTTGATTACGATCAAAGTATTAAACCTTTCAAGTGTA
ATGAATGTGGTGAACGATTTTACCAAGAAAGCACTCTAACTCGACACAAA
AGGATCCATAAAGAATGTAAGTATAGATGCAAACAATGTGATAAATGTTA
TAATAGTAAAAATAATCTTATGcaacatcaaaaacattttcatgaAGGTT
TGAGACCCTTCAGGTGTGACGAGTGCCATAAAGCCTTTTGTCGCAAAAAT
CACTTAACAATCCATAAAAGAACAGTTCATGAAGGTATAAAGGCATttga
atgtcaagaatgtggtaaatcatNGTGCCATAAAGCCTTTTGTCGCAAAA
ATTACTTAACAATCCATAAAAGAACAATTCATGAAGGTATAAAGGCATtt
gaatgtcaagaatgtggtaaatcatTTGGAAGAAAATCGGCCGTAACCTC
GCATAAAAGAACTGTTCATGAAGGCATAAAGCCTTTTAATTGTCAAGAGT
GTAGTAAATCTTTTGGACTTAAGACGACCTTAACTTCTCATCAAAGAACT
GTTCATGAAGGTGTAAAGGCCTtcaaatgtcaagaatgtggtaaatcttt
tggaCACAAGACGAACTTAACTTCTCATCAAAGAACTGTTCATGAAGGTG
TAAAGGCCTTCAAATGTCAAGAATGTCGTAAATGTTTTTCTACAAAGAGT
TCTTTGAAAAGGCATCAAAGAACAGTCCatgataaagctttttaagcgtc
aGAAATAAGGAAAAAGAATTGAGAGAAAGGTTCGTTAAAGAAACataaaa
gaataaataaatgaataaatttcATTGATGTGAAATGTCATTGATgtgtt
agattttttttcactttaNGAAAAAGAATTGAGAGAAAGGTTCGTTAAAG
AAACatgaaagaataaataaatgaataaatttcATTGATGTGAAATGTCA
TTGAtgtgttgattttttttcactttaatcCACAGACACGTCGAAAGGAA
GTTCAAGAAGAGATTGAATGTTTCAATGTGTGAAAAGTGTTGCAAATTTA
ATTGAAGATAAACAAGGAGCGCAGGCTATTAGCGATGGGAGAATTTTATT
AtctttaaatataaaaacttcAACGAATCTTGTCATTGATAACGAGCTAC
TGAGCCTTCAACGGCACTTTCTACGggaaaattgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025476-exon-sc0000536-1491911889:221386..221420 | TCONS_00025476-exon-sc0000536-1491911889:221386..221420 | Clytia hemisphaerica | exon |
| TCONS_00025476-exon-sc0000536-1510915933:221386..221420 | TCONS_00025476-exon-sc0000536-1510915933:221386..221420 | Clytia hemisphaerica | exon |
| TCONS_00025476-exon-sc0000536-1575043694:221386..221420 | TCONS_00025476-exon-sc0000536-1575043694:221386..221420 | Clytia hemisphaerica | exon |
| TCONS_00025476-exon-sc0000536-1491911889:224052..225722 | TCONS_00025476-exon-sc0000536-1491911889:224052..225722 | Clytia hemisphaerica | exon |
| TCONS_00025476-exon-sc0000536-1510915933:224052..225722 | TCONS_00025476-exon-sc0000536-1510915933:224052..225722 | Clytia hemisphaerica | exon |
| TCONS_00025476-exon-sc0000536-1575043694:224052..225722 | TCONS_00025476-exon-sc0000536-1575043694:224052..225722 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000536 | supercontig | sc0000536:221386..225722 + |
Blast
BLAST of TCONS_00025476 vs. Swiss-Prot (Human)
Match: ZN33B (Zinc finger protein 33B OS=Homo sapiens GN=ZNF33B PE=1 SV=2) HSP 1 Score: 213.386 bits (542), Expect = 1.110e-59 Identity = 126/259 (48.65%), Postives = 166/259 (64.09%), Query Frame = 2
Query: 554 KPFKCNECGERFYQESTLTRHKRIHK-ECKYRCKQCDKCYNSKNNLMQHQKHFHEGLRPFRCDECHKAFCRKNHLTIHKRTVHEGIKAFECQECGKSXCHKAFCRKNYLTIHKRTIHEGIKAFECQECGKSFGRKSAVTSHKRTVHEGIKPFNCQECSKSFGLKTTLTSHQRTVHEGVKAFKCQECGKSFGHKTNLTSHQRTVHEGVKAFKCQECRKCFSTKSSLKRHQRT-VHDKAF*ASEIRKKN*EKGSLKKHKRI 1324
KPF+CNECG+ F +S LT H+R H E Y+C C K + K++L +HQ+ H G +P+ C EC K+FC +HLT+H+RT H G K FEC ECGKS FC+K++LT H+RT H G K +EC CGK+F KS +T H + +H G+KP+ C EC K+F LK+ LT HQRT H G K F C ECGK F HK+ L+ H RT H G K ++C EC K F KS L +H RT +K + +E K +K L +H+RI
Sbjct: 383 KPFECNECGKAFSHKSALTLHQRTHTGEKPYQCNACGKTFYQKSDLTKHQR-THTGQKPYECYECGKSFCMNSHLTVHQRT-HTGEKPFECLECGKS-----FCQKSHLTQHQRT-HIGDKPYECNACGKTFYHKSVLTRH-QIIHTGLKPYECYECGKTFCLKSDLTIHQRT-HTGEKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQRI 630 HSP 2 Score: 187.578 bits (475), Expect = 7.595e-51 Identity = 123/282 (43.62%), Postives = 163/282 (57.80%), Query Frame = 2
Query: 554 KPFKCNECGERFYQESTLTRHKRIHKECK-YRCKQCDKCYNSKNNLMQHQKHFHEGLRPFRCDECHKAFCRKNHLTIHKRTVHEGIKAFECQECGK-----------------------SXCHKAFCRKNYLTIHKRTIHEGIKAFECQECGKSFGRKSAVTSHKRTVHEGIKPFNCQECSKSFGLKTTLTSHQRTVHEGVKAFKCQECGKSFGHKTNLTSHQRTVHEGVKAFKCQECRKCFSTKSSLKRHQRT-VHDKAF*ASEIRKKN*EKGSLKKHKRI 1324
KP++CN CG+ FY +S LTRH+ IH K Y C +C K + K++L HQ+ H G +PF C EC K F K+ L+ H RT H G K +EC ECGK + C K FC+K+ LT H+R IH G K +EC ECGK+F KSA+ H+RT H KP+ C EC KSF +K+ L H+R H G K ++C ECGKSF HK++LT H R H G K+ +C EC K F KS L +HQR+ +K + + RK +K +L H+R
Sbjct: 495 KPYECNACGKTFYHKSVLTRHQIIHTGLKPYECYECGKTFCLKSDLTIHQR-THTGEKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQR-IHIGEKPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHERK-HTGEKPYECNECGKSFSHKSSLTVHHR-AHTGEKSCQCNECGKIFYRKSDLAKHQRSHTGEKPYECNTCRKTFSQKSNLIVHQRT 770 HSP 3 Score: 114.775 bits (286), Expect = 1.219e-26 Identity = 76/169 (44.97%), Postives = 100/169 (59.17%), Query Frame = 2
Query: 737 DECHKAFCRKNHLTIHKRTVHEGIKAFECQECGKSXCHKAFCRKNYLTIHKRTIHEGIKAFECQECGKSFGRKSAVTSHKRTVHEGIKPFNCQECSKSFGLKTTLTSHQRTVHEGVKAFKCQECGKSFGHKTNLTSHQRTVHEGVKAFKCQECRKCFSTKSSLKRHQRT 1243
+C K C K+ L+ H +K ++C E G + F RK L+ ++ +G K FEC ECGK+F KS +T H+R VH G K F C +C K+F K+ LT HQR+ H G K F+C ECGK+F HK+ LT HQRT H G K ++C C K F KS L +HQRT
Sbjct: 278 SDCEKFLCVKSTLSKHDGVP---VKHYDCGESGNN-----FRRKLCLSQLQKG-DKGEKHFECNECGKAFWEKSHLTRHQR-VHTGEKHFQCNQCGKTFWEKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFYQKSDLTKHQRT 434
The following BLAST results are available for this feature:
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