TCONS_00025460 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025460
Unique NameTCONS_00025460
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025460 ID=TCONS_00025460|Name=TCONS_00025460|organism=Clytia hemisphaerica|type=transcript|length=4415bp
NCACTGTTCTTGAAAACACCCCAGACCATCTTCCAGATATAAGCATTTTC
CCAGTTCATGACATCATAGCTGGGCCATTAAAGGTCATTCCCATTCGAGG
AAAAAAAAGGAACATTCCAGATTATGATTTAATTGAACATATGTTTAACA
AAGTAGCAGGACTAAACCGTCTAGCTTTAGTAAATATGATGTAATATCCA
tacttttttaagcttttgagtTATATATGCTAAACATTATTGTTGTATTT
TGgcatagtttttcttgaaaatgtttcacaaaattgtattccaGAAGAAT
GTTTGagaaatagataaatatttttgtgttcaacatcaaaaaattctaaa
acttgcaatttttctcatatgtacctcaaaacccacaattaaaaaagtga
gttttttgaGAGCAATTAAAATAAACACATTGCTTACAGCACTTAGGACT
TTTTTCCTATATTTGTGTTATGCCTAGAAGTAATAGAAAATGAAAGATTG
ATAGGTTAGTCAATAGCAAGTGACTtatctgaccattttttgaaaaaaat
cacaaattttgaaGTTAGATTTCTAGCATTAAAtcttgataaaaaacttt
tacccaatcaataatgctcaatttttttttaaataataaagaaacTATTA
TGCCAACATAATCTTAAAAAGTTATgctgataaaaacattttagattttt
ccaGAACtcctgaaatgaaattgttggtTTTGAGGTACCTGTGGGTTTTG
TGGTACATATACCTGTAAACCAATGCATTTTTGCCTGCAAGGGGTTATAG
GGAAAGTAGGTTTTGAGCTCCTAACGTCTGATAGCGAtcttttttggcaa
aaagtttcaaggtggTATATATGATATTATGAATAGAAAGAACATATtaa
tgactaaaatttgaggggatttccAATGAACAGAActtttaagaaaagct
caaaaaccaaCTTTTCCTTATAGGAAACTCCTCAGGTAAAAACGTGTTTG
TTTACATCCAGAGGCAGAGACCAAATGGAAATGGCGgaaagcatcaaaat
aatgtgtGCGCATATCTGTTTTATGAATCAATGGGAAGGTGTATTTCAGC
CAAAATCTTACTGCATGTAATAAATACCTGGTATTTTTGTTGAACCTTTT
AGCATTGCTGGTAATAATTGGCAATTAAACggtaaaaatgctctaaaaat
gacttATGGCAAAATCTTCATGATGCATcgagaacttttttaaaactttt
taatatataccgtgagattgggtaacttgcatcagtggaggctaacatgc
atagccctcaaatgaatgacatggctggtcattaaaatacaactatgcag
ctccgcttgcagctctactctaccatttttgttttgatttaactttgtat
tttaatgaccagccaggtcatttatttcAGGGCTATGCATgatagcctcc
actgatgcaagttacccaatctcacggtatttcATACACTCCGGTTCAAA
CCTACATGTTTCCAATTACGAAACATGCATACCACTGTGGTCACAAGGGC
TGCTGGTTTTCTGAAATTGAAGGTTCTATGGTTCTATACAGAGTGACGTT
ATTTATAGTAGATACAGGTGACCTAACTGTTATGATCGCCACACACAGGT
GCACCACCGGGATGCACTGCCATCTGGGTGTACAGTATGGTTTTTTGGCT
TCTTGGTAGCTTTTTATTCAAAACAGAAGTCTCATTGTTATTTTGTGACT
TAACGTCAcaaagaagatgctcaattgtcattgaacttGTTGTGTgatgt
caatttttgaaatatgtagcctccgtggaagctatatattcgaaaatatt
ggacagtaaataagccaatcaaatgtcgctatttacgcaCGTTGGATAAT
AATacattatatttccttaattcagaaacacaaaaattcactttgcattc
gcgaaaaataaaaaataacaaaatgatgaattaatattacatactaaaac
GCCCCCGTCTTTCAGTCTCGTCTTGCAAAACGCCCGTCTGCCCAATAGAC
CCCTTTCATGTGATGTCATATGTTTTGGATTACCTTGTTTAGCCtaatta
aaatatattacaaatttGGATGATAGAGGCAATATGCCTCCAACTTTGCC
TCCGAATTTTGTCTCTTTTATTccagattttgttaaaaaagaccataCAG
AAAAGAAGACTAagcgagaaaatcaaaacaagctgaaaaattatgaaagg
gGTCTATATTCACCCAATTATCTTAAATTCACCTtgattgtcctttgact
ttcaaaaaattatatttaaaaattatgaatttataataaatacaataaac
aaaatgtttgatacttcatcagtgaaatattcaacaaattcctagtttca
attttcagtagGCATTTTTCTAGCGCTTAGTTTATCGCGCGTTTTTTCAC
GTCACACAAATTTTCTCAGCCGTTTgaaataattatgcattgccaaattt
ggttctccattgttcttactgtcaagtcaggatcgatggtgacacctaag
aataaaaaagaaaggaattcgtcagttttatgcatatattaatttgtgAG
ATTTTCTATTCGTTGTACATTTTCGTAGACTTTTCAGAATACCTCTTTTT
GCTTGCGGGATCAatggtaacttttcattttcattattttttaaatggag
cagaaccgaaaaaaaattaaacttccgAAAGTTGCACATTTCAAGtaagt
aaacgattctgacaattgacaaaattaatgatgataattttttatcgGTC
AgccaaatgtctcgtattgggggttctagctTTGAGCTTTAAAAGCCTAC
GCAAGATTGCAGCGTTTGGGTAATCAAGGCAAAACtaaaaaaagctggtg
ttttgaagtgTTTCCGTGCGATCACAATATCGCACTTTGTGACGCACTGC
TTATCATATTACATTTCTTTCATTACTTTGACGGTTTATTAAAATTATGC
TTACATTTTTGAgtgattttgaaatgaaaacagAAGAGCTAGAATGGAAC
TAATGATTCTTAAGCTTAGATACAATCGAATTTCTGATTGAAGAAATAGA
ACTTCATGTTTGTGTCCACTGGAATTCTTTTGTTGATGGACAAATTCTTC
TTCATCGAACACCCAGCttaaaactaaattttgaagtatcgacaaaaata
tttttgttacaaTAATTCTTAGGAATAGTAATAATAACTCAAACAGAGTC
AAATCTTTTtccaaatgaaaatgcctcatTCTGTCTGAAGTGCTGCAATG
AGTGGAGAAGTTGAACATTTACCATGGTTCCACCCGAATTTAAACAGACA
TCAAACTGAAGCTCTATTGTTACATAATGGACAAGATGGCTCCTATCTTA
TACGCTCCAGTACAAGTCATGAAGGCGAATACTCACTGTCTGTCAAATGT
GCAAATTCtgtcaaacattttcaaatagGATGGAATGGGAATGAATATGT
TTTTGGGATGGGAAAGTTCTCGAACATTGAAGATTTTGTCTCTCATTTTG
AGAACAAACCTTTGATTGGAGGAGAAACTGgtgttttgattttgttacgA
TACCCTTATCCACGGCATGTTGAGGAGCCAACTAAGTATGATACAATACG
TGTTCATGCTGAATGGGGAAATCGACCCTCAAGCCAGCATGCTGATGATG
CACATATTGAATCACTCAATTCCAAAGAAGGATATCTTACTAAGCAGGGT
GGAAGAAGAAAGaactGGAAAGCGCGCTGGTTCGTTTTGGAGAGGAATCT
ATTCAGATATTACAAGACAAAAGGGgaaGCTCAACCCATAAGAACATTAG
ACTTGGATAAATGTTTGGAGATTGACCAAGACTTTGAATGTGGCAAAGAT
AACACTATAAAggtTGTCATGCCTGGTCGCACTTTTTTAATTTATGCAAG
TACACCTACTGAGAAGGATGATTGGCTCAAAATATTGAAGTGGAAAATAG
AAAAGCTTCACAATGCTATTTGAATGGTAATTGCTTTATAATTCTCAAAT
CATCCAGTTTGGCATCATACTGTGTGTGCCAAGAAAGTGGACAAAATTTT
Acgtaaagtaaaatcctcaaaactcattatctaaactgggcttaaaaaat
tgaaataagattaaaattCTGTTCAATATCAATAGATATTCGATTCCaaa
gatgattgaataggttttggAGATTGAAAGATTAAGTATACAAGTTTAGC
ATAAACCATGAGGCTTTTACCTTATGTAAATATTCATCCGCTTTTTTCGA
GACACACTGTATTAAAGGTTCTctagtactctcgggtacctaatagccgt
cccccccccgctaattaatttttcgaaaattttccacccaggacattctt
attccaacccccccg
Run BLAST on NCBI

protein sequence of TCONS_00025460-protein

>TCONS_00025460-protein ID=TCONS_00025460-protein|Name=TCONS_00025460-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MSGEVEHLPWFHPNLNRHQTEALLLHNGQDGSYLIRSSTSHEGEYSLSVK
CANSVKHFQIGWNGNEYVFGMGKFSNIEDFVSHFENKPLIGGETGVLILL
RYPYPRHVEEPTKYDTIRVHAEWGNRPSSQHADDAHIESLNSKEGYLTKQ
GGRRKNWKARWFVLERNLFRYYKTKGEAQPIRTLDLDKCLEIDQDFECGK
DNTIKVVMPGRTFLIYASTPTEKDDWLKILKWKIEKLHNAI
Run BLAST on NCBI

transcript from alignment at sc0000536:103395..111959+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025460 ID=TCONS_00025460|Name=TCONS_00025460|organism=Clytia hemisphaerica|type=transcript|length=8565bp|location=Sequence derived from alignment at sc0000536:103395..111959+ (Clytia hemisphaerica)
NCACTGTTCTTGAAAACACCCCAGACCATCTTCCAGATATAAGCATTTTC
CCAGTTCATGACATCATAGCTGGGCCATTAAAGGTCATTCCCATTCGAGG
AAAAAAAAGGAACATTCCAGATTATGATTTAATTGAACATATGTTTAACA
AAGTAGCAGGACTAAACCGTCTAGCTTTAGTAAATATGATGTAATATCCA
tacttttttaagcttttgagtTATATATGCTAAACATTATTGTTGTATTT
TGgcatagtttttcttgaaaatgtttcacaaaattgtattccaGAAGAAT
GTTTGagaaatagataaatatttttgtgttcaacatcaaaaaattctaaa
acttgcaatttttctcatatgtacctcaaaacccacaattaaaaaagtga
gttttttgaGAGCAATTAAAATAAACACATTGCTTACAGCACTTAGGACT
TTTTTCCTATATTTGTGTTATGCCTAGAAGTAATAGAAAATGAAAGATTG
ATAGGTTAGTCAATAGCAAGTGACTtatctgaccattttttgaaaaaaat
cacaaattttgaaGTTAGATTTCTAGCATTAAAtcttgataaaaaacttt
tacccaatcaataatgctcaatttttttttaaataataaagaaacTATTA
TGCCAACATAATCTTAAAAAGTTATgctgataaaaacattttagattttt
ccaGAACtcctgaaatgaaattgttggtTTTGAGGTACCTGTGGGTTTTG
TGGTACATATACCTGTAAACCAATGCATTTTTGCCTGCAAGGGGTTATAG
GGAAAGTAGGTTTTGAGCTCCTAACGTCTGATAGCGAtcttttttggcaa
aaagtttcaaggtggTATATATGATATTATGAATAGAAAGAACATATtaa
tgactaaaatttgaggggatttccAATGAACAGAActtttaagaaaagct
caaaaaccaaCTTTTCCTTATAGGAAACTCCTCAGGTAAAAACGTGTTTG
TTTACATCCAGAGGCAGAGACCAAATGGAAATGGCGgaaagcatcaaaat
aatgtgtGCGCATATCTGTTTTATGAATCAATGGGAAGGTGTATTTCAGC
CAAAATCTTACTGCATGTAATAAATACCTGGTATTTTTGTTGAACCTTTT
AGCATTGCTGGTAATAATTGGCAATTAAACggtaaaaatgctctaaaaat
gacttATGGCAAAATCTTCATGATGCATcgagaacttttttaaaactttt
taatatataccgtgagattgggtaacttgcatcagtggaggctaacatgc
atagccctcaaatgaatgacatggctggtcattaaaatacaactatgcag
ctccgcttgcagctctactctaccatttttgttttgatttaactttgtat
tttaatgaccagccaggtcatttatttcAGGGCTATGCATgatagcctcc
actgatgcaagttacccaatctcacggtatttcATACACTCCGGTTCAAA
CCTACATGTTTCCAATTACGAAACATGCATACCACTGTGGTCACAAGGGC
TGCTGGTTTTCTGAAATTGAAGGTTCTATGGTTCTATACAGAGTGACGTT
ATTTATAGTAGATACAGGTGACCTAACTGTTATGATCGCCACACACAGGT
GCACCACCGGGATGCACTGCCATCTGGGTGTACAGTATGGTTTTTTGGCT
TCTTGGTAGCTTTTTATTCAAAACAGAAGTCTCATTGTTATTTTGTGACT
TAACGTCAcaaagaagatgctcaattgtcattgaacttGTTGTGTgatgt
caatttttgaaatatgtagcctccgtggaagctatatattcgaaaatatt
ggacagtaaataagccaatcaaatgtcgctatttacgcaCGTTGGATAAT
AATacattatatttccttaattcagaaacacaaaaattcactttgcattc
gcgaaaaataaaaaataacaaaatgatgaattaatattacatactaaaac
GCCCCCGTCTTTCAGTCTCGTCTTGCAAAACGCCCGTCTGCCCAATAGAC
CCCTTTCATGTGATGTCATATGTTTTGGATTACCTTGTTTAGCCtaatta
aaatatattacaaatttGGATGATAGAGGCAATATGCCTCCAACTTTGCC
TCCGAATTTTGTCTCTTTTATTccagattttgttaaaaaagaccataCAG
AAAAGAAGACTAagcgagaaaatcaaaacaagctgaaaaattatgaaagg
gGTCTATATTCACCCAATTATCTTAAATTCACCTtgattgtcctttgact
ttcaaaaaattatatttaaaaattatgaatttataataaatacaataaac
aaaatgtttgatacttcatcagtgaaatattcaacaaattcctagtttca
attttcagtagGCATTTTTCTAGCGCTTAGTTTATCGCGCGTTTTTTCAC
GTCACACAAATTTTCTCAGCCGTTTgaaataattatgcattgccaaattt
ggttctccattgttcttactgtcaagtcaggatcgatggtgacacctaag
aataaaaaagaaaggaattcgtcagttttatgcatatattaatttgtgAG
ATTTTCTATTCGTTGTACATTTTCGTAGACTTTTCAGAATACCTCTTTTT
GCTTGCGGGATCAatggtaacttttcattttcattattttttaaatggag
cagaaccgaaaaaaaattaaacttccgAAAGTTGCACATTTCAAGtaagt
aaacgattctgacaattgacaaaattaatgatgataattttttatcgGTC
AgccaaatgtctcgtattgggggttctagctTTGAGCTTTAAAAGCCTAC
GCAAGATTGCAGCGTTTGGGTAATCAAGGCAAAACtaaaaaaagctggtg
ttttgaagtgTTTCCGTGCGATCACAATATCGCACTTTGTGACGCACTGC
TTATCATATTACATTTCTTTCATTACTTTGACGGTTTATTAAAATTATGC
TTACATTTTTGAgtgattttgaaatgaaaacagAAGAGCTAGAATGGAAC
TAATGATTCTTAAGCTTAGATACAATCGAATTTCTGATTGAAGAAATAGA
ACTTCATGTTTGTGTCCACTGGAATTCTTTTGTTGATGGACAAATTCTTC
TTCATCGAACACCCAGCttaaaactaaattttgaagtatcgacaaaaata
tttttgttacaaTAATTCTTAGGAATAGTAATAATAACTCAAACAGAGTC
AAATCTTTTtccaaatgaaaatgcctcatTCTGTCTGAAGTGCTGCAATG
AGTGGAGAAGTTGAACATTTACCGTAAGTATTTTTCTAAATGGAAATAAT
GAAACTTTAAATAAAGGTTATCGTCTTTTGGGGGTGACTTTCATGAGTTT
GAGATGTAACTCGCTATTCTTAGCTCCAAATCTCAAACCATCCAAAGCAG
TATATAAtatcaacaaaagaaatgtGTTCAAAAACTTTCATGAAATATTA
AATTTTAATCTTCTTGGTGTAGCAACTGTAGCGCAAAGCTGGACATTAGG
TAAGTTGAGGAATGTAGCAAGAAAGAGTGGTTCCCTTCCCTATTCCCCCT
ACCTTCAAATAGTTAGCCAATCAAGCAACAAACAGAAGTGGAGTCTGCCT
CTGACTGTGTTCACAGACTTAGACGGtaattaagtaagtaagtactTACA
CCCCTTGGGCCTGCTCGGACAACAAAGTGAGTCGATTTAAACTCACTGTT
CAATAGAAATTCCCCAAAAGCAATAACCCAAATTTTCTAGTAAAGGATAA
GGACAATATGTGGCAAAAATTAAGAGCAGCAGAGTCTCAACAGAAATTTT
CTGATTCTTACAAAGCAAGAGTGTATACTAAATAGTTTTAGCAATTTATC
TTAGTGTTGACTtttattttctgtatttttatGATACTGTAGATGGTTCC
ACCCGAATTTAAACAGACATCAAACTGAAGCTCTATTGTTACATAATGGA
CAAGATGGCTCCTATCTTATACGCTCCAGTACAAGTCATGAAGGCGAATA
CTCACTGTCTGTCAAATGTGCAAATTCtgtcaaacattttcaaatagGAT
GGAATGGGAATGAATATGTTTTTGGGATGGGAAAGTTCTCGAACATTGAA
GATTTTGTCTCTCATTTTGAGAACAAACCTTTGATTGGAGGAGAAACTGG
TATATAAAATTAACTTACTGATTAAAAAACTTggattttgatcaattttt
ttttttaagatgctTAATTTTGCACGGCCGGCCAGCAAAAGGAGTGGGAG
TGGGGATGCCTATAATAACTTGTCAACCACTCTTTATAAGCTTCTTTATA
TATTGAGAAGAAGGATAAATGTACAAAGTTCTCTATACCACAAAACAAAT
AGAGCTGATTAAAatcgggttggtctaaaaagcagggtagccaatggggt
agccaattgggctaggttatggggtacctcttttttgcctaaacttttga
aatctgaaacctattttcatgtggaaataactatacaacatcttgttaat
gattccatgtaataaaatttaagattcctttcNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNATTAAAATCATTCATTTATTTGTCAA
CAAGTACACAAAATTCATTGTTTCACCCGAAggattttcaaatgaaaaat
gattgtTTGAGACtttgagaacattttattacaataaaaataatgttaag
aaagttaaaaactatACATAACTTCATGTTTTACAACATTACATTTTTTC
aggtgttttgattttgttacgATACCCTTATCCACGGCATGTTGAGGAGC
CAACTAAGTATGATACAATACGTGTTCATGCTGAATGGGGAAATCGACCC
TCAAGCCAGCATGCTGATGATGCACATATTGAATCAGTATGAGTTACAAT
ACATTTCCTTaacatttttcattgaaaactcATTTAAAGCACACAGGGCT
CTTcatctaaataaaaaattctgaTAGATTTAAGCatacccaaaaaaatt
ttcccttgCTGGTCCACTGGGTTAGCTCTTATCTGGTCAGCTGGGAATGG
TTTGCTGAATTTCAATCCCTAAATTCAGATTTTTGAAGCATCATGGATGT
TATAAAGGGTGTCAGATTATGAACACGCTTTGACATAAAAAAGTTCAGTC
AAGGAAACATTATGTGTCTGACTGTTTACTTCTTACAGTATTGGAATTGA
TTATTGTATTTCTGTTGTAGCTCAATTCCAAAGAAGGATATCTTACTAAG
CAGGGTGGAAGAAGAAAGGTATCCATGTTATTTATAGTAAccttatttta
atatttttaagtGATGTTTAAAGGCATAGATAGGCATATTATATAAAAAG
TAAGACCCAAAAACTTATCTcactttgatttgaaaatttcagaactGGAA
AGCGCGCTGGTTCGTTTTGGAGAGGAATCTATTCAGATATTACAAGACAA
AAGGGGTTTGTGTTTATCGCAATTCAACAAAAACAACTTGAAATATTCTC
ACATCCACCCTTTTACAATGTTTCCAGTATTTTTCTTATATCTCTGGAGC
CTTTGATTCTACCCTAGAGGACCTAAAAATCACTGCAATGGTTGGTCTCA
GACATACTCATAAGATATCGACACATGAGATAATTAAAATAAgtcataaa
aatataaaaaagcgGTGCAGGTTTAATCAAGAAATCATTTCTCTCATGTC
AAATACTTCATTATAGTTTTCTTGATAACCTTTATTAAAAACTATCTTTt
tggaattgaatatcttttgatTGGAAAAAGAAGTTTCTTGTCTTTTGTCG
GAATTCCCAAGTCTAGTACAATTGGATAATGACTTTTATTGATATTTATA
TAAGTAAACTCTGTTCCAAACCTTTTCCGAATACCCTGTGCGTTACTTTA
tatttccttttcatttttttcaggaaGCTCAACCCATAAGAACATTAGAC
TTGGATAAATGTTTGGAGATTGACCAAGACTTTGAATGTGGCAAAGATAA
CACTATAAAGTAATGTATCCATTGCGTTGAAAAGCTGAACTCAGTGttgc
aacttttttttcaaagactcATGGGGGACACAAAACTTTTTAAGTTAAAG
CCAGTATATCTATTCATGAGTATGTTTGCTTATTCTGCAAAAACATTCCA
CAGCTCCATTAATAACGCAgacaattcattccaattcttaTTCGACACTT
TGCAGTCAAAACATTGTAAACTCTCAGGccattaaaatgttatattagag
tgaagacattgcagtgttgATCGAACAAATACGTCACGCgctatcttttg
ttttgatgattggttgaataaCTGCAATCTTTATGTAAGCTCAGCGTTTT
TGAAGCAGCGATTCAGACTTAATGACGGAAAAcataatgtcaatctggct
ttaaggaaatttcgaggaAGGTTTATAAGGATTTTTCACCTAAAGGGAAT
AGAAAAATTGTTCGAATTAAAGATACAAATTAAAGatagaagttcgagtt
atggagactccactgtattagaaaaatactttttacaaaacttgattgag
atattattttttttcagggtTGTCATGCCTGGTCGCACTTTTTTAATTTA
TGCAAGTACACCTACTGAGAAGGATGATTGGCTCAAAATATTGAAGTGGA
AAATAgtaagttttctttttctttagttctttGACTCGCTGTTTTAGTAT
ACTTTACCTCAAAAATATTTCTGTTTTGGTTTTCCTCAAGTCATTCTCGC
GTCATAGTCCTGATGTTACCTCATCTCAAAATCTGGTAGGATCCTGCCAA
CTTGTAGAATTTGTCAAAACCAAAAATACACAAAGtataaattggaaaaa
taaaagcTGAATCCGACTGGATTTTTATTTGTTATCAGTAAAATTTATAA
TTACCACTCATAAAAAGCAAGAGTatctcatattttttataagattatAA
TTTTTGTAAGCGTTATTTCGACGCTCGtgtgtctttttcaagtttcATAT
CCTTTATATGTATATAGCTCCTTCCACTAGCAAAAAATGTATTGCCAGTT
AAGCGAGACAGGGttgtatactttaatgggataaactttcgcggggatta
aatttcgccgatttcgcggatttgggtgtcattcgcgaaaatctgcgaaa
ttaagctccaatggaaatttggaagggcctgatccgcgaaatatttctaa
acaaaactcaaaatatgtcaaataaatactatttgaatggttacttgcat
caaagaggcgcaaataatgtgtATTTCAaaaaccaacatgcatgatttga
cagtaaaagtcacaaaatcgtgaaaatattgccacccaatagtgctaccc
gcgaaattaagtccccgcgaatttttttgatttcgcGGTTGGGACTATTA
ATTTAATCCCTACGAAAGTTCATCCCATTTAAGTGATGTATGGGTTCATT
TTTGCGATTTTCTGTTATTAGTTCTGGCAAAAAATTTAGAATCCAAATTT
CGGTCTATATCCCTAGGAGATAAAACAATATATGAAAAAGATTTGCCAAA
TTTAGTAATCGTGAAATTTTATAAATTCTCAATTCGCAAAAAAAGTCATT
ctctttttgatatttcattCATTGACATTCCATCGTTTTTTCCTTTTAGG
AAAAGCTTCACAATGCTATTTGAATGGTAATTGCTTTATAATTCTCAAAT
CATCCAGTTTGGCATCATACTGTGTGTGCCAAGAAAGTGGACAAAATTTT
Acgtaaagtaaaatcctcaaaactcattatctaaactgggcttaaaaaat
tgaaataagattaaaattCTGTTCAATATCAATAGATATTCGATTCCaaa
gatgattgaataggttttggAGATTGAAAGATTAAGTATACAAGTTTAGC
ATAAACCATGAGGCTTTTACCTTATGTAAATATTCATCCGCTTTTTTCGA
GACACACTGTATTAAAGGTTCTctagtactctcgggtacctaatagccgt
cccccccccgctaattaatttttcgaaaattttccacccaggacattctt
attccaacccccccg

Coding sequence (CDS) from alignment at sc0000536:103395..111959+

>TCONS_00025460 ID=TCONS_00025460|Name=TCONS_00025460|organism=Clytia hemisphaerica|type=CDS|length=5808bp|location=Sequence derived from alignment at sc0000536:103395..111959+ (Clytia hemisphaerica)
ATGAGTGGAGAAGTTGAACATTTACCATGGTTCCACCCGAATTTAAACAG
ACATCAAACTGAAGCTCTATTGTTACATAATGGACAAGATGGCTCCTATC
TTATACGCTCCAGTACAAGTCATGAAGGCGAATACTCACTGTCTGTCAAA
TGTGCAAATTCtgtcaaacattttcaaatagGATGGAATGGGAATGAATA
TGTTTTTGGGATGGGAAAGTTCTCGAACATTGAAGATTTTGTCTCTCATT
TTGAGAACAAACCTTTGATTGGAGGAGAAACTGgtgttttgattttgtta
cgATACCCTTATCCACGGCATGTTGAGGAGCCAACTAAGTATGATACAAT
ACGTGTTCATGCTGAATGGGGAAATCGACCCTCAAGCCAGCATGCTGATG
ATGCACATATTGAATCACTCAATTCCAAAGAAGGATATCTTACTAAGCAG
GGTGGAAGAAGAAAGaactGGAAAGCGCGCTGGTTCGTTTTGGAGAGGAA
TCTATTCAGATATTACAAGACAAAAGGGgaaGCTCAACCCATAAGAACAT
TAGACTTGGATAAATGTTTGGAGATTGACCAAGACTTTGAATGTGGCAAA
GATAACACTATAAAggtTGTCATGCCTGGTCGCACTTTTTTAATTTATGC
AAGTACACCTACTGAGAAGGATGATTGGCTCAAAATATTGAAGTGGAAAA
TAGAAAAGCTTCACAATGCTATTTGAATGAGTGGAGAAGTTGAACATTTA
CCATGGTTCCACCCGAATTTAAACAGACATCAAACTGAAGCTCTATTGTT
ACATAATGGACAAGATGGCTCCTATCTTATACGCTCCAGTACAAGTCATG
AAGGCGAATACTCACTGTCTGTCAAATGTGCAAATTCtgtcaaacatttt
caaatagGATGGAATGGGAATGAATATGTTTTTGGGATGGGAAAGTTCTC
GAACATTGAAGATTTTGTCTCTCATTTTGAGAACAAACCTTTGATTGGAG
GAGAAACTGgtgttttgattttgttacgATACCCTTATCCACGGCATGTT
GAGGAGCCAACTAAGTATGATACAATACGTGTTCATGCTGAATGGGGAAA
TCGACCCTCAAGCCAGCATGCTGATGATGCACATATTGAATCACTCAATT
CCAAAGAAGGATATCTTACTAAGCAGGGTGGAAGAAGAAAGaactGGAAA
GCGCGCTGGTTCGTTTTGGAGAGGAATCTATTCAGATATTACAAGACAAA
AGGGgaaGCTCAACCCATAAGAACATTAGACTTGGATAAATGTTTGGAGA
TTGACCAAGACTTTGAATGTGGCAAAGATAACACTATAAAggtTGTCATG
CCTGGTCGCACTTTTTTAATTTATGCAAGTACACCTACTGAGAAGGATGA
TTGGCTCAAAATATTGAAGTGGAAAATAGAAAAGCTTCACAATGCTATTT
GAATGAGTGGAGAAGTTGAACATTTACCATGGTTCCACCCGAATTTAAAC
AGACATCAAACTGAAGCTCTATTGTTACATAATGGACAAGATGGCTCCTA
TCTTATACGCTCCAGTACAAGTCATGAAGGCGAATACTCACTGTCTGTCA
AATGTGCAAATTCtgtcaaacattttcaaatagGATGGAATGGGAATGAA
TATGTTTTTGGGATGGGAAAGTTCTCGAACATTGAAGATTTTGTCTCTCA
TTTTGAGAACAAACCTTTGATTGGAGGAGAAACTGgtgttttgattttgt
tacgATACCCTTATCCACGGCATGTTGAGGAGCCAACTAAGTATGATACA
ATACGTGTTCATGCTGAATGGGGAAATCGACCCTCAAGCCAGCATGCTGA
TGATGCACATATTGAATCACTCAATTCCAAAGAAGGATATCTTACTAAGC
AGGGTGGAAGAAGAAAGaactGGAAAGCGCGCTGGTTCGTTTTGGAGAGG
AATCTATTCAGATATTACAAGACAAAAGGGgaaGCTCAACCCATAAGAAC
ATTAGACTTGGATAAATGTTTGGAGATTGACCAAGACTTTGAATGTGGCA
AAGATAACACTATAAAggtTGTCATGCCTGGTCGCACTTTTTTAATTTAT
GCAAGTACACCTACTGAGAAGGATGATTGGCTCAAAATATTGAAGTGGAA
AATAGAAAAGCTTCACAATGCTATTTGAATGAGTGGAGAAGTTGAACATT
TACCATGGTTCCACCCGAATTTAAACAGACATCAAACTGAAGCTCTATTG
TTACATAATGGACAAGATGGCTCCTATCTTATACGCTCCAGTACAAGTCA
TGAAGGCGAATACTCACTGTCTGTCAAATGTGCAAATTCtgtcaaacatt
ttcaaatagGATGGAATGGGAATGAATATGTTTTTGGGATGGGAAAGTTC
TCGAACATTGAAGATTTTGTCTCTCATTTTGAGAACAAACCTTTGATTGG
AGGAGAAACTGgtgttttgattttgttacgATACCCTTATCCACGGCATG
TTGAGGAGCCAACTAAGTATGATACAATACGTGTTCATGCTGAATGGGGA
AATCGACCCTCAAGCCAGCATGCTGATGATGCACATATTGAATCACTCAA
TTCCAAAGAAGGATATCTTACTAAGCAGGGTGGAAGAAGAAAGaactGGA
AAGCGCGCTGGTTCGTTTTGGAGAGGAATCTATTCAGATATTACAAGACA
AAAGGGgaaGCTCAACCCATAAGAACATTAGACTTGGATAAATGTTTGGA
GATTGACCAAGACTTTGAATGTGGCAAAGATAACACTATAAAggtTGTCA
TGCCTGGTCGCACTTTTTTAATTTATGCAAGTACACCTACTGAGAAGGAT
GATTGGCTCAAAATATTGAAGTGGAAAATAGAAAAGCTTCACAATGCTAT
TTGAATGAGTGGAGAAGTTGAACATTTACCATGGTTCCACCCGAATTTAA
ACAGACATCAAACTGAAGCTCTATTGTTACATAATGGACAAGATGGCTCC
TATCTTATACGCTCCAGTACAAGTCATGAAGGCGAATACTCACTGTCTGT
CAAATGTGCAAATTCtgtcaaacattttcaaatagGATGGAATGGGAATG
AATATGTTTTTGGGATGGGAAAGTTCTCGAACATTGAAGATTTTGTCTCT
CATTTTGAGAACAAACCTTTGATTGGAGGAGAAACTGgtgttttgatttt
gttacgATACCCTTATCCACGGCATGTTGAGGAGCCAACTAAGTATGATA
CAATACGTGTTCATGCTGAATGGGGAAATCGACCCTCAAGCCAGCATGCT
GATGATGCACATATTGAATCACTCAATTCCAAAGAAGGATATCTTACTAA
GCAGGGTGGAAGAAGAAAGaactGGAAAGCGCGCTGGTTCGTTTTGGAGA
GGAATCTATTCAGATATTACAAGACAAAAGGGgaaGCTCAACCCATAAGA
ACATTAGACTTGGATAAATGTTTGGAGATTGACCAAGACTTTGAATGTGG
CAAAGATAACACTATAAAggtTGTCATGCCTGGTCGCACTTTTTTAATTT
ATGCAAGTACACCTACTGAGAAGGATGATTGGCTCAAAATATTGAAGTGG
AAAATAGAAAAGCTTCACAATGCTATTTGAATGAGTGGAGAAGTTGAACA
TTTACCATGGTTCCACCCGAATTTAAACAGACATCAAACTGAAGCTCTAT
TGTTACATAATGGACAAGATGGCTCCTATCTTATACGCTCCAGTACAAGT
CATGAAGGCGAATACTCACTGTCTGTCAAATGTGCAAATTCtgtcaaaca
ttttcaaatagGATGGAATGGGAATGAATATGTTTTTGGGATGGGAAAGT
TCTCGAACATTGAAGATTTTGTCTCTCATTTTGAGAACAAACCTTTGATT
GGAGGAGAAACTGgtgttttgattttgttacgATACCCTTATCCACGGCA
TGTTGAGGAGCCAACTAAGTATGATACAATACGTGTTCATGCTGAATGGG
GAAATCGACCCTCAAGCCAGCATGCTGATGATGCACATATTGAATCACTC
AATTCCAAAGAAGGATATCTTACTAAGCAGGGTGGAAGAAGAAAGaactG
GAAAGCGCGCTGGTTCGTTTTGGAGAGGAATCTATTCAGATATTACAAGA
CAAAAGGGgaaGCTCAACCCATAAGAACATTAGACTTGGATAAATGTTTG
GAGATTGACCAAGACTTTGAATGTGGCAAAGATAACACTATAAAggtTGT
CATGCCTGGTCGCACTTTTTTAATTTATGCAAGTACACCTACTGAGAAGG
ATGATTGGCTCAAAATATTGAAGTGGAAAATAGAAAAGCTTCACAATGCT
ATTTGAATGAGTGGAGAAGTTGAACATTTACCATGGTTCCACCCGAATTT
AAACAGACATCAAACTGAAGCTCTATTGTTACATAATGGACAAGATGGCT
CCTATCTTATACGCTCCAGTACAAGTCATGAAGGCGAATACTCACTGTCT
GTCAAATGTGCAAATTCtgtcaaacattttcaaatagGATGGAATGGGAA
TGAATATGTTTTTGGGATGGGAAAGTTCTCGAACATTGAAGATTTTGTCT
CTCATTTTGAGAACAAACCTTTGATTGGAGGAGAAACTGgtgttttgatt
ttgttacgATACCCTTATCCACGGCATGTTGAGGAGCCAACTAAGTATGA
TACAATACGTGTTCATGCTGAATGGGGAAATCGACCCTCAAGCCAGCATG
CTGATGATGCACATATTGAATCACTCAATTCCAAAGAAGGATATCTTACT
AAGCAGGGTGGAAGAAGAAAGaactGGAAAGCGCGCTGGTTCGTTTTGGA
GAGGAATCTATTCAGATATTACAAGACAAAAGGGgaaGCTCAACCCATAA
GAACATTAGACTTGGATAAATGTTTGGAGATTGACCAAGACTTTGAATGT
GGCAAAGATAACACTATAAAggtTGTCATGCCTGGTCGCACTTTTTTAAT
TTATGCAAGTACACCTACTGAGAAGGATGATTGGCTCAAAATATTGAAGT
GGAAAATAGAAAAGCTTCACAATGCTATTTGAATGAGTGGAGAAGTTGAA
CATTTACCATGGTTCCACCCGAATTTAAACAGACATCAAACTGAAGCTCT
ATTGTTACATAATGGACAAGATGGCTCCTATCTTATACGCTCCAGTACAA
GTCATGAAGGCGAATACTCACTGTCTGTCAAATGTGCAAATTCtgtcaaa
cattttcaaatagGATGGAATGGGAATGAATATGTTTTTGGGATGGGAAA
GTTCTCGAACATTGAAGATTTTGTCTCTCATTTTGAGAACAAACCTTTGA
TTGGAGGAGAAACTGgtgttttgattttgttacgATACCCTTATCCACGG
CATGTTGAGGAGCCAACTAAGTATGATACAATACGTGTTCATGCTGAATG
GGGAAATCGACCCTCAAGCCAGCATGCTGATGATGCACATATTGAATCAC
TCAATTCCAAAGAAGGATATCTTACTAAGCAGGGTGGAAGAAGAAAGaac
tGGAAAGCGCGCTGGTTCGTTTTGGAGAGGAATCTATTCAGATATTACAA
GACAAAAGGGgaaGCTCAACCCATAAGAACATTAGACTTGGATAAATGTT
TGGAGATTGACCAAGACTTTGAATGTGGCAAAGATAACACTATAAAggtT
GTCATGCCTGGTCGCACTTTTTTAATTTATGCAAGTACACCTACTGAGAA
GGATGATTGGCTCAAAATATTGAAGTGGAAAATAGAAAAGCTTCACAATG
CTATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014294XLOC_014294Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025460-exon-sc0000536-1491911889:103395..106717TCONS_00025460-exon-sc0000536-1491911889:103395..106717Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1510915933:103395..106717TCONS_00025460-exon-sc0000536-1510915933:103395..106717Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1575043694:103395..106717TCONS_00025460-exon-sc0000536-1575043694:103395..106717Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1491911889:107337..107593TCONS_00025460-exon-sc0000536-1491911889:107337..107593Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1510915933:107337..107593TCONS_00025460-exon-sc0000536-1510915933:107337..107593Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1575043694:107337..107593TCONS_00025460-exon-sc0000536-1575043694:107337..107593Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1491911889:108647..108780TCONS_00025460-exon-sc0000536-1491911889:108647..108780Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1510915933:108647..108780TCONS_00025460-exon-sc0000536-1510915933:108647..108780Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1575043694:108647..108780TCONS_00025460-exon-sc0000536-1575043694:108647..108780Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1491911889:109115..109162TCONS_00025460-exon-sc0000536-1491911889:109115..109162Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1510915933:109115..109162TCONS_00025460-exon-sc0000536-1510915933:109115..109162Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1575043694:109115..109162TCONS_00025460-exon-sc0000536-1575043694:109115..109162Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1491911889:109287..109349TCONS_00025460-exon-sc0000536-1491911889:109287..109349Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1510915933:109287..109349TCONS_00025460-exon-sc0000536-1510915933:109287..109349Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1575043694:109287..109349TCONS_00025460-exon-sc0000536-1575043694:109287..109349Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1491911889:109818..109903TCONS_00025460-exon-sc0000536-1491911889:109818..109903Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1510915933:109818..109903TCONS_00025460-exon-sc0000536-1510915933:109818..109903Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1575043694:109818..109903TCONS_00025460-exon-sc0000536-1575043694:109818..109903Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1491911889:110462..110549TCONS_00025460-exon-sc0000536-1491911889:110462..110549Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1510915933:110462..110549TCONS_00025460-exon-sc0000536-1510915933:110462..110549Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1575043694:110462..110549TCONS_00025460-exon-sc0000536-1575043694:110462..110549Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1491911889:111544..111959TCONS_00025460-exon-sc0000536-1491911889:111544..111959Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1510915933:111544..111959TCONS_00025460-exon-sc0000536-1510915933:111544..111959Clytia hemisphaericaexon
TCONS_00025460-exon-sc0000536-1575043694:111544..111959TCONS_00025460-exon-sc0000536-1575043694:111544..111959Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025460-proteinTCONS_00025460-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000536supercontigsc0000536:103395..111959 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.57555	2.31733	0.805783	1.24179	2.83708	1.87677	1.41899	2.39927	0.721267	1.11163	0.26576	0.425926	3.61327	3.02539	2.08761	1.67456	1.30578	0.750451	2.69474	3.91686	0.675351	0.87262	2.11798	1.95468	1.99861	1.898	1.74998	0.478773	1.96835	1.81883
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000980SH2
IPR001849PH_domain
IPR011993PH_dom-like
Blast
[Close]
BLAST of TCONS_00025460 vs. Swiss-Prot (Human)
Match: DAPP1 (Dual adapter for phosphotyrosine and 3-phosphotyrosine and 3-phosphoinositide OS=Homo sapiens GN=DAPP1 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.752e-62
Identity = 107/223 (47.98%), Postives = 143/223 (64.13%), Query Frame = 1 
Query: 3310 VEHLPWFHPNLNRHQTEALLLHNGQDGSYLIRSSTSHEGEYSLSVKCANSVKHFQIGWNGNEYVFGMGKFSNIEDFVSHFENKPLIGGETGVLILLRYPYPRHVEEPTKYDTIRVHAEWGNRPSSQHADD--AHIESLNSKEGYLTKQGGRRKNWKARWFVLERNLFRYYKTKGEAQPIRTLDLDKCLEIDQDFECGKDNTIKVVMPGRTFLIYASTPTEKDD 3972
            ++ L W+H NL RH  EALLL NG DGSYL+R S    G YSLSV+  +SVKHF + + G  + FG  +FS+++DFV HF N+PLIG ETG L++L++PYPR VEEP+ Y+++RVH       + +  DD      SL +KEGYLTKQGG  K WK RWF L RN  +Y+K +   +PIR LDL +C  +  D+   + N   +V P RTF + A T  E D+
Sbjct:   30 LQDLGWYHGNLTRHAAEALLLSNGCDGSYLLRDSNETTGLYSLSVRAKDSVKHFHVEYTGYSFKFGFNEFSSLKDFVKHFANQPLIGSETGTLMVLKHPYPRKVEEPSIYESVRVHTA---MQTGRTEDDLVPTAPSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFPFRTFYLCAKTGVEADE 249
The following BLAST results are available for this feature:
BLAST of TCONS_00025460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DAPP11.752e-6247.98Dual adapter for phosphotyrosine and 3-phosphotyro... [more]
back to top