TCONS_00025443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025443
Unique NameTCONS_00025443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length783

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025443 ID=TCONS_00025443|Name=TCONS_00025443|organism=Clytia hemisphaerica|type=transcript|length=783bp
GATCGGTATCACTATTTTAGAGGTCCTCGTTGACGCGGCACGCCAATCAA
ACGGCCTCATTAGGCCAGTGTAACGGTCTATACTAATAGCTATGAGAGTG
CCGATAGAAGCTGATAGACATAAACAAATAATCCCGAACGCTATAATACA
CATGTCTTTACCCATAGTCCAACTCATGTAGTCTCTCACGAAAATCATTT
GCGTTGGAACGTAAAGTAAGAGTAGAAGGAGATCGGCAACAGCTAAGTTG
AATATATAAAAATGAATCGATCGTCGCATTGTCTTCACTGTGATAACTGC
TACACATGTCATAAGGTTTCCGAGAAGCCCACATATTAGTAGAATACAAT
ATAGGAAAAGAAGTATGATACGAAATTCGTTACTGTACGGTTTAAGGCGG
CGTGGCTGTAACAGAGTGGTCGATAAGGGTGGCTGGGCGGTTGTTCTGTT
GAAGGTATCGTTGAAAGATATATTTCTTTTCACCATCAAGGTATCGTTGA
TTATTGGTGATATCATTTCCAGTTTGTTTCGTTGTCGAGGTCAGAGTTAG
TGTTCAAATTCAAATTACTACACCGGTATGTATTCAAGATTTTTCAACCA
ACCAAAGTTTGTTCTTCCTGTTACATTTCACCCGGGATTTCACCTCATGT
ATGTTCTTCTTTAAATGAACAATTCTGAAAActcatttcaaagttttcat
tttttaagtattttcactgcaaaaattagaacaaaattagtataaatttt
ttgaatcaaCATCTAGTCTCTGATAAACGAAAG
Run BLAST on NCBI

transcript from alignment at sc0000535:202258..203040-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025443 ID=TCONS_00025443|Name=TCONS_00025443|organism=Clytia hemisphaerica|type=transcript|length=783bp|location=Sequence derived from alignment at sc0000535:202258..203040- (Clytia hemisphaerica)
GATCGGTATCACTATTTTAGAGGTCCTCGTTGACGCGGCACGCCAATCAA
ACGGCCTCATTAGGCCAGTGTAACGGTCTATACTAATAGCTATGAGAGTG
CCGATAGAAGCTGATAGACATAAACAAATAATCCCGAACGCTATAATACA
CATGTCTTTACCCATAGTCCAACTCATGTAGTCTCTCACGAAAATCATTT
GCGTTGGAACGTAAAGTAAGAGTAGAAGGAGATCGGCAACAGCTAAGTTG
AATATATAAAAATGAATCGATCGTCGCATTGTCTTCACTGTGATAACTGC
TACACATGTCATAAGGTTTCCGAGAAGCCCACATATTAGTAGAATACAAT
ATAGGAAAAGAAGTATGATACGAAATTCGTTACTGTACGGTTTAAGGCGG
CGTGGCTGTAACAGAGTGGTCGATAAGGGTGGCTGGGCGGTTGTTCTGTT
GAAGGTATCGTTGAAAGATATATTTCTTTTCACCATCAAGGTATCGTTGA
TTATTGGTGATATCATTTCCAGTTTGTTTCGTTGTCGAGGTCAGAGTTAG
TGTTCAAATTCAAATTACTACACCGGTATGTATTCAAGATTTTTCAACCA
ACCAAAGTTTGTTCTTCCTGTTACATTTCACCCGGGATTTCACCTCATGT
ATGTTCTTCTTTAAATGAACAATTCTGAAAACTCATTTCAAAGTTTTCAT
TTTTTAAGTATTTTCACTGCAAAAATTAGAACAAAATTAGTATAAATTTT
TTGAATCAACATCTAGTCTCTGATAAACGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014281XLOC_014281Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025443-exon-sc0000535-1575043694:202258..203040TCONS_00025443-exon-sc0000535-1575043694:202258..203040Clytia hemisphaericaexon
TCONS_00025443-exon-sc0000535-1510915933:202258..203040TCONS_00025443-exon-sc0000535-1510915933:202258..203040Clytia hemisphaericaexon
TCONS_00025443-exon-sc0000535-1491911889:202258..203040TCONS_00025443-exon-sc0000535-1491911889:202258..203040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000535supercontigsc0000535:202258..203040 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.210501	0	1.88363	1.25631	1.82205	1.69276	0.375087	0.961791	0.295583	0.574714	0.169782	1.62584	0	0.293985	1.08154	1.17143	2.09127	0.977933	0.461192	1.65273	0.718202	0.584247	0	0.175926	0.165234	0	0.36853	0.582729
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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