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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025442 ID=TCONS_00025442|Name=TCONS_00025442|organism=Clytia hemisphaerica|type=transcript|length=5547bpRun BLAST on NCBI protein sequence of TCONS_00025442-protein >TCONS_00025442-protein ID=TCONS_00025442-protein|Name=TCONS_00025442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=575bp MTSAPGRHKSKPYQQTVDHKSLWSQWLAFRPRLWAILEKPFSSVYAQVSARun BLAST on NCBI transcript from alignment at sc0000535:129703..176630- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025442 ID=TCONS_00025442|Name=TCONS_00025442|organism=Clytia hemisphaerica|type=transcript|length=46928bp|location=Sequence derived from alignment at sc0000535:129703..176630- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000535:129703..176630- >TCONS_00025442 ID=TCONS_00025442|Name=TCONS_00025442|organism=Clytia hemisphaerica|type=CDS|length=6912bp|location=Sequence derived from alignment at sc0000535:129703..176630- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025442 vs. Swiss-Prot (Human)
Match: KCNB2 (Potassium voltage-gated channel subfamily B member 2 OS=Homo sapiens GN=KCNB2 PE=2 SV=2) HSP 1 Score: 177.563 bits (449), Expect = 7.090e-45 Identity = 99/263 (37.64%), Postives = 161/263 (61.22%), Query Frame = 1
Query: 940 RPRLWAILEKPFSSVYAQVSAFISLVIILMSLTTFCAETVKYFEEEKHIFGQL---------EYFYCAFFTLELLLRLWCCPSKKKYFKSAMTWIDIISTAQFYIS-FIADTH----AFDXXXXXXX----XXXXXXXXXXKNLSGMQVIAQTLKASANELLLLCIIVFIPMVIFSTCVFYAEQGQNNTKFPSIPETFWWAIITMTTVGYGDVTPDTLAGRIIGGLTACSGVLIVALPVSVIGSNFSLYYSYAQARMRLPKRK 1674
R +LW +LEKP SSV A++ A +S++ I++S T+ +E FGQL E A+FT+E LLR P+K K+FK + ID+++ +Y++ F+ +++ F + +R+ R+ + ++ +G+Q + TL+ S NEL LL + + + ++IFS+ VF+AE+ ++ TKF SIP +FWWA ITMTTVGYGD+ P TL G+I+GGL +GVL++ALP+ +I +NFS +Y + + + KR+
Sbjct: 176 RKKLWDLLEKPNSSVAAKILAIVSILFIVLSTIALSLNTLPELQETDE-FGQLNDNRQLAHVEAVCIAWFTMEYLLRFLSSPNKWKFFKGPLNVIDLLAILPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRILKLARHSTGLQSLGFTLRRSYNELGLLILFLAMGIMIFSSLVFFAEKDEDATKFTSIPASFWWATITMTTVGYGDIYPKTLLGKIVGGLCCIAGVLVIALPIPIIVNNFSEFYKEQKRQEKAIKRR 437 The following BLAST results are available for this feature:
BLAST of TCONS_00025442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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